Mutagenetix > Incidental Mutation

Incidental Mutation 'R6836:Katnal1'

534561

Institutional Source

Beutler Lab

Gene Symbol

Katnal1

Ensembl Gene

ENSMUSG00000041298

Gene Name

katanin p60 subunit A-like 1

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.217) question?

Stock #

R6836 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

148808394-148865978 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 148830974 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 200 (N200S)

Ref Sequence

ENSEMBL: ENSMUSP00000120502 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000047257] [ENSMUST00000110509] [ENSMUST00000147473]

AlphaFold

Q8K0T4

Predicted Effect

probably damaging
Transcript: ENSMUST00000047257
AA Change: N200S

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000043210
Gene: ENSMUSG00000041298
AA Change: N200S

Domain	Start	End	E-Value	Type
PDB:2RPA\|A	1	72	3e-19	PDB
low complexity region	100	111	N/A	INTRINSIC
low complexity region	127	138	N/A	INTRINSIC
AAA	238	380	3.01e-20	SMART
Pfam:Vps4_C	437	486	2.1e-10	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000110509
AA Change: N200S

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000106136
Gene: ENSMUSG00000041298
AA Change: N200S

Domain	Start	End	E-Value	Type
PDB:2RPA\|A	1	72	3e-20	PDB
low complexity region	100	111	N/A	INTRINSIC
low complexity region	127	138	N/A	INTRINSIC
Blast:AAA	159	229	8e-7	BLAST
PDB:4L16\|A	184	234	3e-8	PDB
SCOP:d1iqpa2	185	234	4e-6	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000147473
AA Change: N200S

PolyPhen 2 Score 0.995 (Sensitivity: 0.68; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000120502
Gene: ENSMUSG00000106892
AA Change: N200S

Domain	Start	End	E-Value	Type
PDB:2RPA\|A	1	72	1e-20	PDB
low complexity region	100	111	N/A	INTRINSIC
low complexity region	127	138	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 97.9%

Validation Efficiency

100% (62/62)

MGI Phenotype

PHENOTYPE: Mice homozygous for an ENU induced mutation display male infertility with decreased testis weight and premature exfoliation of spermatids from the seminiferous epithelium. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adamtsl2	T	C	2: 26,971,718 (GRCm39)	M1T	probably null	Het
Aim2	C	G	1: 173,291,546 (GRCm39)	T317R	probably damaging	Het
Alox8	T	C	11: 69,077,331 (GRCm39)	Y473C	probably damaging	Het
Alox8	T	C	11: 69,080,715 (GRCm39)	R209G	possibly damaging	Het
Asb5	A	G	8: 55,038,106 (GRCm39)	M210V	probably benign	Het
Atp2c2	T	A	8: 120,461,154 (GRCm39)	L249Q	probably damaging	Het
AU018091	T	G	7: 3,213,986 (GRCm39)	D77A	probably damaging	Het
Bahcc1	A	T	11: 120,162,583 (GRCm39)	K294*	probably null	Het
Baz2b	C	T	2: 59,747,769 (GRCm39)	R1298Q	probably damaging	Het
Bivm	T	A	1: 44,182,296 (GRCm39)	N501K	possibly damaging	Het
Bpifb5	T	A	2: 154,069,985 (GRCm39)	I145N	probably benign	Het
Casq2	A	T	3: 101,994,076 (GRCm39)	N41I	probably damaging	Het
Ccdc18	T	C	5: 108,345,833 (GRCm39)	L993P	probably damaging	Het
Cdcp3	A	T	7: 130,798,233 (GRCm39)	I81F	possibly damaging	Het
Cfap44	A	G	16: 44,224,442 (GRCm39)	D50G	probably damaging	Het
Clca3a2	T	A	3: 144,512,144 (GRCm39)	I91F	probably damaging	Het
Crebbp	T	A	16: 3,997,886 (GRCm39)	H66L	possibly damaging	Het
Cyfip2	T	C	11: 46,163,467 (GRCm39)	T321A	probably benign	Het
Dido1	A	G	2: 180,304,100 (GRCm39)	V1268A	probably benign	Het
E030030I06Rik	A	C	10: 22,024,391 (GRCm39)	V174G	probably damaging	Het
Gm20730	G	T	6: 43,058,767 (GRCm39)		probably null	Het
Gm36176	T	C	10: 77,682,976 (GRCm39)		probably benign	Het
Gper1	T	A	5: 139,412,435 (GRCm39)	M260K	probably damaging	Het
Igfbp2	T	C	1: 72,888,817 (GRCm39)	L89P	probably damaging	Het
Kcnk13	G	T	12: 100,027,948 (GRCm39)	R341L	probably damaging	Het
Klhl20	T	A	1: 160,932,976 (GRCm39)	E277D	probably benign	Het
Lingo1	T	C	9: 56,527,056 (GRCm39)	Y517C	probably damaging	Het
Lrrk1	C	T	7: 65,992,527 (GRCm39)	E82K	probably benign	Het
Mtor	T	A	4: 148,573,955 (GRCm39)	V1275D	possibly damaging	Het
Ncan	C	T	8: 70,552,965 (GRCm39)	S1089N	possibly damaging	Het
Notch4	C	T	17: 34,805,074 (GRCm39)	T1643I	probably damaging	Het
Or13a25	A	C	7: 140,248,093 (GRCm39)	I298L	possibly damaging	Het
Or1i2	A	G	10: 78,448,424 (GRCm39)	L17P	probably damaging	Het
Or2y15	A	T	11: 49,350,904 (GRCm39)	T133S	possibly damaging	Het
Or4c10	T	C	2: 89,760,683 (GRCm39)	C177R	probably damaging	Het
Pcdhgb6	T	C	18: 37,876,015 (GRCm39)	V241A	probably benign	Het
Phf11b	T	A	14: 59,565,572 (GRCm39)	T102S	possibly damaging	Het
Pkd1	T	A	17: 24,800,233 (GRCm39)	V2998E	probably damaging	Het
Ppp1r13b	T	C	12: 111,801,629 (GRCm39)	S352G	probably benign	Het
Ptprh	C	T	7: 4,554,134 (GRCm39)	V778M	probably damaging	Het
Ptprz1	C	T	6: 23,030,664 (GRCm39)	Q1008*	probably null	Het
Ralgapa1	A	T	12: 55,651,058 (GRCm39)		probably null	Het
Rbm20	G	A	19: 53,802,500 (GRCm39)	G336E	probably damaging	Het
Sdsl	T	C	5: 120,600,167 (GRCm39)	I77V	probably benign	Het
Serpina3b	G	A	12: 104,100,341 (GRCm39)	E308K	probably benign	Het
Sfrp5	G	A	19: 42,190,149 (GRCm39)	T101I	probably damaging	Het
Slc2a13	C	T	15: 91,205,835 (GRCm39)	V451I	probably benign	Het
Slc6a9	C	T	4: 117,725,083 (GRCm39)	A559V	possibly damaging	Het
Spg11	C	T	2: 121,890,016 (GRCm39)	A2109T	probably damaging	Het
Stard9	C	T	2: 120,530,324 (GRCm39)	R2194C	probably benign	Het
Tfeb	T	C	17: 48,097,123 (GRCm39)		probably null	Het
Tiam2	T	A	17: 3,464,655 (GRCm39)	I128N	probably benign	Het
Tmem161b	C	A	13: 84,370,537 (GRCm39)		probably benign	Het
Tpr	T	G	1: 150,312,424 (GRCm39)		probably null	Het
Traf3ip1	T	C	1: 91,448,722 (GRCm39)	I456T	probably benign	Het
Ttll4	T	A	1: 74,728,572 (GRCm39)	D892E	probably damaging	Het
Ubr1	T	A	2: 120,727,156 (GRCm39)		probably null	Het
Vmn2r74	T	A	7: 85,606,630 (GRCm39)	I239F	probably benign	Het
Wdfy3	C	T	5: 102,100,865 (GRCm39)	V251M	probably damaging	Het
Xylb	T	A	9: 119,220,820 (GRCm39)	L531H	probably damaging	Het
Zfp960	T	A	17: 17,308,434 (GRCm39)	C383S	probably damaging	Het

Other mutations in Katnal1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01457:Katnal1	APN	5	148,830,607 (GRCm39)	splice site	probably benign
IGL02369:Katnal1	APN	5	148,815,737 (GRCm39)	missense	probably benign	0.04
R0001:Katnal1	UTSW	5	148,858,085 (GRCm39)	missense	probably damaging	0.98
R0230:Katnal1	UTSW	5	148,855,460 (GRCm39)	missense	possibly damaging	0.60
R0308:Katnal1	UTSW	5	148,815,734 (GRCm39)	missense	possibly damaging	0.95
R0591:Katnal1	UTSW	5	148,829,326 (GRCm39)	missense	probably damaging	1.00
R1220:Katnal1	UTSW	5	148,831,061 (GRCm39)	missense	probably benign	0.00
R1448:Katnal1	UTSW	5	148,841,486 (GRCm39)	missense	probably benign	0.37
R2163:Katnal1	UTSW	5	148,825,746 (GRCm39)	missense	probably damaging	1.00
R4791:Katnal1	UTSW	5	148,841,460 (GRCm39)	missense	probably damaging	1.00
R5168:Katnal1	UTSW	5	148,858,132 (GRCm39)	missense	possibly damaging	0.91
R6182:Katnal1	UTSW	5	148,841,407 (GRCm39)	missense	possibly damaging	0.83
R6542:Katnal1	UTSW	5	148,813,016 (GRCm39)	missense	probably benign	0.01
R7077:Katnal1	UTSW	5	148,828,547 (GRCm39)	missense	probably benign	0.00
R7490:Katnal1	UTSW	5	148,828,492 (GRCm39)	missense	probably null	0.00
R9282:Katnal1	UTSW	5	148,831,021 (GRCm39)	nonsense	probably null
R9436:Katnal1	UTSW	5	148,815,761 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AACTCTATCAGTGTGTCGACAG -3'
(R):5'- GCACATGGGCACACATTATATATCG -3'

Sequencing Primer
(F):5'- TCAGTGTGTCGACAGCAAGTTAAC -3'
(R):5'- GGGCACACATTATATATCGAAAGC -3'

Posted On

2018-09-12