Mutagenetix > Incidental Mutation

Incidental Mutation 'R6858:Vmn1r25'

535368

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r25

Ensembl Gene

ENSMUSG00000115668

Gene Name

vomeronasal 1 receptor 25

Synonyms

V1rc8

MMRRC Submission

044960-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.103) question?

Stock #

R6858 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

57955379-57956287 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 57955996 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Glycine at position 98 (S98G)

Ref Sequence

ENSEMBL: ENSMUSP00000154074 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000176572] [ENSMUST00000228585]

AlphaFold

H3BLP0

Predicted Effect

probably benign
Transcript: ENSMUST00000176572
AA Change: S98G

PolyPhen 2 Score 0.220 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000135860
Gene: ENSMUSG00000115668
AA Change: S98G

Domain	Start	End	E-Value	Type
Pfam:V1R	29	293	5.4e-52	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000228585
AA Change: S98G

PolyPhen 2 Score 0.220 (Sensitivity: 0.91; Specificity: 0.88)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.4%

Validation Efficiency

96% (49/51)

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aldob	T	C	4: 49,538,796 (GRCm39)	T241A	probably benign	Het
Arid4a	A	G	12: 71,070,283 (GRCm39)	I65V	probably benign	Het
Bhmt2	C	T	13: 93,807,948 (GRCm39)	E47K	probably damaging	Het
Bpifa3	G	A	2: 153,979,514 (GRCm39)	G213D	probably benign	Het
C4b	C	G	17: 34,948,805 (GRCm39)	A1548P	probably damaging	Het
Ccdc39	A	G	3: 33,874,017 (GRCm39)	V605A	probably damaging	Het
Cept1	A	T	3: 106,420,195 (GRCm39)		probably null	Het
Cntrl	T	C	2: 35,052,107 (GRCm39)		probably null	Het
Col3a1	A	G	1: 45,385,144 (GRCm39)	D87G	probably damaging	Het
Crim1	A	T	17: 78,623,056 (GRCm39)	E418V	probably damaging	Het
Crtac1	T	C	19: 42,307,174 (GRCm39)	I196M	possibly damaging	Het
Crtap	T	C	9: 114,209,084 (GRCm39)	Y320C	probably damaging	Het
Cttnbp2	A	G	6: 18,448,452 (GRCm39)	V27A	probably damaging	Het
Cyp2c69	G	A	19: 39,866,009 (GRCm39)	L195F	probably benign	Het
Cyp2d26	G	A	15: 82,678,284 (GRCm39)	R31C	probably damaging	Het
Fan1	T	A	7: 64,022,234 (GRCm39)	N340Y	probably damaging	Het
Fign	G	T	2: 63,810,157 (GRCm39)	T371K	probably benign	Het
Fryl	T	C	5: 73,222,375 (GRCm39)	T2069A	probably damaging	Het
Gm3486	A	G	14: 41,210,322 (GRCm39)	I53T	probably damaging	Het
Gprc5d	T	C	6: 135,093,313 (GRCm39)	N198S	possibly damaging	Het
Ighv1-42	A	G	12: 114,900,966 (GRCm39)	S40P	probably damaging	Het
Itga8	A	G	2: 12,204,892 (GRCm39)	V515A	probably benign	Het
Kidins220	A	T	12: 25,058,542 (GRCm39)	I523L	possibly damaging	Het
Lmx1a	A	T	1: 167,660,450 (GRCm39)	N245I	probably damaging	Het
Med22	T	C	2: 26,795,949 (GRCm39)	D157G	possibly damaging	Het
Ola1	T	C	2: 72,927,574 (GRCm39)	H335R	probably damaging	Het
Or1a1	A	T	11: 74,086,925 (GRCm39)	M199L	probably benign	Het
Or4c12	A	G	2: 89,774,087 (GRCm39)	I124T	probably damaging	Het
Or6c213	A	G	10: 129,574,333 (GRCm39)	F151S	probably damaging	Het
Or7e166	T	C	9: 19,624,765 (GRCm39)	I214T	probably damaging	Het
Or8h9	A	G	2: 86,789,034 (GRCm39)	I256T	probably benign	Het
Pde1a	T	A	2: 79,959,502 (GRCm39)		probably benign	Het
Pdgfrb	G	A	18: 61,198,219 (GRCm39)	G304D	probably benign	Het
Potegl	T	C	2: 23,102,676 (GRCm39)	V138A	possibly damaging	Het
Prune2	T	A	19: 17,095,470 (GRCm39)	C325S	possibly damaging	Het
Ptk2b	T	C	14: 66,450,847 (GRCm39)	I40V	probably damaging	Het
Qrich1	A	G	9: 108,411,333 (GRCm39)	D286G	probably damaging	Het
Scn5a	T	C	9: 119,321,156 (GRCm39)	I1469V	probably benign	Het
Serpina3k	G	A	12: 104,311,504 (GRCm39)	A361T	possibly damaging	Het
Slc25a23	A	G	17: 57,365,171 (GRCm39)	Y73H	probably damaging	Het
Tmco3	A	G	8: 13,363,924 (GRCm39)	D82G	probably damaging	Het
Trbv28	G	T	6: 41,248,624 (GRCm39)	M51I	probably damaging	Het
Unc13b	A	T	4: 43,165,828 (GRCm39)	H204L	possibly damaging	Het
Vamp5	G	A	6: 72,357,424 (GRCm39)		probably benign	Het
Vmn2r2	A	G	3: 64,044,915 (GRCm39)	F77S	probably damaging	Het
Vmn2r79	A	T	7: 86,686,580 (GRCm39)	M654L	probably benign	Het
Zfp985	A	T	4: 147,667,764 (GRCm39)	K211*	probably null	Het
Zwilch	C	T	9: 64,060,869 (GRCm39)	D328N	probably damaging	Het

Other mutations in Vmn1r25

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01867:Vmn1r25	APN	6	57,956,196 (GRCm39)	missense	probably damaging	0.99
R0299:Vmn1r25	UTSW	6	57,955,494 (GRCm39)	missense	probably damaging	1.00
R0401:Vmn1r25	UTSW	6	57,955,696 (GRCm39)	missense	probably benign	0.01
R0499:Vmn1r25	UTSW	6	57,955,494 (GRCm39)	missense	probably damaging	1.00
R1294:Vmn1r25	UTSW	6	57,955,464 (GRCm39)	missense	possibly damaging	0.55
R1562:Vmn1r25	UTSW	6	57,955,786 (GRCm39)	missense	probably benign	0.03
R1661:Vmn1r25	UTSW	6	57,955,446 (GRCm39)	missense	probably damaging	1.00
R1665:Vmn1r25	UTSW	6	57,955,446 (GRCm39)	missense	probably damaging	1.00
R1879:Vmn1r25	UTSW	6	57,955,912 (GRCm39)	missense	possibly damaging	0.50
R2221:Vmn1r25	UTSW	6	57,956,223 (GRCm39)	missense	probably damaging	1.00
R2223:Vmn1r25	UTSW	6	57,956,223 (GRCm39)	missense	probably damaging	1.00
R2374:Vmn1r25	UTSW	6	57,955,543 (GRCm39)	missense	probably benign	0.10
R4073:Vmn1r25	UTSW	6	57,955,572 (GRCm39)	missense	possibly damaging	0.94
R4398:Vmn1r25	UTSW	6	57,955,812 (GRCm39)	missense	probably damaging	1.00
R4590:Vmn1r25	UTSW	6	57,955,480 (GRCm39)	missense	probably benign	0.02
R4779:Vmn1r25	UTSW	6	57,956,011 (GRCm39)	missense	probably damaging	0.98
R5397:Vmn1r25	UTSW	6	57,956,060 (GRCm39)	nonsense	probably null
R6113:Vmn1r25	UTSW	6	57,955,557 (GRCm39)	missense	probably benign	0.00
R7407:Vmn1r25	UTSW	6	57,956,044 (GRCm39)	missense	possibly damaging	0.76
R7748:Vmn1r25	UTSW	6	57,955,549 (GRCm39)	missense	probably damaging	1.00
R8001:Vmn1r25	UTSW	6	57,956,065 (GRCm39)	nonsense	probably null
R8472:Vmn1r25	UTSW	6	57,955,531 (GRCm39)	missense	possibly damaging	0.87
R9235:Vmn1r25	UTSW	6	57,955,488 (GRCm39)	missense	probably damaging	0.96
R9651:Vmn1r25	UTSW	6	57,956,306 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- TGAACAGGATTCAGTGACTCTCATC -3'
(R):5'- ATGTCATAGATCAAAGCCCATGG -3'

Sequencing Primer
(F):5'- ATTCAGTGACTCTCATCTGGTTG -3'
(R):5'- GTCATAGATCAAAGCCCATGGATCTG -3'

Posted On

2018-09-12