Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL01013:Zc3h12d'

53807

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Zc3h12d

Ensembl Gene

ENSMUSG00000039981

Gene Name

zinc finger CCCH type containing 12D

Synonyms

TFL, D730019B10Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.077) question?

Stock #

IGL01013

Quality Score

Status

Chromosome

Chromosomal Location

7708234-7746160 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 7715720 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Threonine at position 41 (I41T)

Ref Sequence

ENSEMBL: ENSMUSP00000040217 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039484]

AlphaFold

no structure available at present

Predicted Effect

probably damaging
Transcript: ENSMUST00000039484
AA Change: I41T

PolyPhen 2 Score 0.998 (Sensitivity: 0.27; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000040217
Gene: ENSMUSG00000039981
AA Change: I41T

Domain	Start	End	E-Value	Type
Pfam:RNase_Zc3h12a	91	247	4e-67	PFAM
low complexity region	333	345	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000175319

Coding Region Coverage

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit disrupted regulation of excessive inflammation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 44 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aasdh	T	A	5: 77,034,053 (GRCm39)	E499D	possibly damaging	Het
Abca1	A	T	4: 53,038,185 (GRCm39)	L2059*	probably null	Het
Ankar	T	A	1: 72,690,148 (GRCm39)	I1228F	possibly damaging	Het
Appl1	A	T	14: 26,671,433 (GRCm39)	Y340N	possibly damaging	Het
Atp8b4	C	A	2: 126,165,007 (GRCm39)	R1103L	probably benign	Het
B4galt6	A	G	18: 20,822,070 (GRCm39)	V308A	probably damaging	Het
Ccdc162	G	A	10: 41,457,335 (GRCm39)	P1534L	probably benign	Het
Ccdc78	A	G	17: 26,008,028 (GRCm39)	E313G	possibly damaging	Het
Cep57l1	G	A	10: 41,616,865 (GRCm39)	R141*	probably null	Het
Cpsf1	G	A	15: 76,483,497 (GRCm39)	Q883*	probably null	Het
Crot	A	G	5: 9,043,575 (GRCm39)	Y16H	probably benign	Het
Cyld	T	G	8: 89,468,990 (GRCm39)	L587R	probably damaging	Het
Fam114a1	G	A	5: 65,188,738 (GRCm39)		probably null	Het
Fam89b	G	T	19: 5,779,397 (GRCm39)	D53E	probably benign	Het
Fig4	T	C	10: 41,143,782 (GRCm39)	M226V	probably benign	Het
Gm10722	A	T	9: 3,002,230 (GRCm39)	Y184F	probably damaging	Het
Hp	C	A	8: 110,305,653 (GRCm39)		probably benign	Het
Igsf9b	G	T	9: 27,245,600 (GRCm39)	R1189L	probably damaging	Het
Ilf3	A	G	9: 21,310,987 (GRCm39)	N620D	possibly damaging	Het
Jakmip3	A	C	7: 138,619,302 (GRCm39)	E228A	possibly damaging	Het
Kpna3	A	T	14: 61,607,966 (GRCm39)	I413K	probably damaging	Het
Letm1	A	T	5: 33,919,934 (GRCm39)	C202S	possibly damaging	Het
Lmod2	C	A	6: 24,604,134 (GRCm39)	Q370K	probably damaging	Het
Map4k5	T	C	12: 69,874,300 (GRCm39)		probably benign	Het
Mcidas	T	A	13: 113,134,119 (GRCm39)		probably benign	Het
Mme	A	G	3: 63,235,281 (GRCm39)		probably null	Het
Mrc1	T	C	2: 14,333,236 (GRCm39)	W1306R	probably damaging	Het
Mthfd1l	C	A	10: 3,980,716 (GRCm39)	Q473K	probably damaging	Het
Muc6	A	T	7: 141,234,333 (GRCm39)	C719*	probably null	Het
Nsun7	T	C	5: 66,440,944 (GRCm39)	I355T	possibly damaging	Het
Padi6	A	G	4: 140,456,314 (GRCm39)	L560P	probably damaging	Het
Parl	C	A	16: 20,101,540 (GRCm39)	A285S	possibly damaging	Het
Pclo	A	T	5: 14,843,848 (GRCm39)	M4795L	unknown	Het
Polr2f	A	G	15: 79,030,329 (GRCm39)	Y56C	probably damaging	Het
Rasgrp2	A	T	19: 6,454,413 (GRCm39)	H152L	probably damaging	Het
Rpl10l	T	C	12: 66,331,001 (GRCm39)	D44G	probably benign	Het
Slc25a16	A	G	10: 62,780,212 (GRCm39)		probably null	Het
Snrnp200	G	A	2: 127,074,392 (GRCm39)	E1411K	probably damaging	Het
Tanc2	G	A	11: 105,515,891 (GRCm39)	R3Q	probably damaging	Het
Tbc1d32	G	T	10: 56,078,055 (GRCm39)		probably null	Het
Tcf7l2	T	C	19: 55,908,059 (GRCm39)		probably benign	Het
Tnrc6c	G	T	11: 117,612,855 (GRCm39)	V498L	probably benign	Het
Tymp	G	A	15: 89,260,513 (GRCm39)	H102Y	probably damaging	Het
Wdr76	T	C	2: 121,365,978 (GRCm39)	S492P	probably benign	Het

Other mutations in Zc3h12d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00095:Zc3h12d	APN	10	7,738,231 (GRCm39)	missense	probably damaging	1.00
IGL02090:Zc3h12d	APN	10	7,743,096 (GRCm39)	missense	probably benign	0.00
IGL02876:Zc3h12d	APN	10	7,738,364 (GRCm39)	missense	probably damaging	0.99
R0040:Zc3h12d	UTSW	10	7,743,678 (GRCm39)	missense	probably benign	0.02
R0040:Zc3h12d	UTSW	10	7,743,678 (GRCm39)	missense	probably benign	0.02
R0242:Zc3h12d	UTSW	10	7,738,330 (GRCm39)	missense	probably damaging	1.00
R0242:Zc3h12d	UTSW	10	7,738,330 (GRCm39)	missense	probably damaging	1.00
R1942:Zc3h12d	UTSW	10	7,729,077 (GRCm39)	missense	probably damaging	1.00
R2290:Zc3h12d	UTSW	10	7,743,223 (GRCm39)	missense	probably benign	0.00
R2354:Zc3h12d	UTSW	10	7,743,702 (GRCm39)	missense	probably benign	0.00
R4816:Zc3h12d	UTSW	10	7,743,711 (GRCm39)	missense	probably damaging	1.00
R4932:Zc3h12d	UTSW	10	7,729,014 (GRCm39)	missense	probably damaging	0.99
R5191:Zc3h12d	UTSW	10	7,743,582 (GRCm39)	missense	possibly damaging	0.51
R5384:Zc3h12d	UTSW	10	7,729,014 (GRCm39)	missense	probably damaging	1.00
R5396:Zc3h12d	UTSW	10	7,742,090 (GRCm39)	missense	probably damaging	1.00
R6409:Zc3h12d	UTSW	10	7,743,082 (GRCm39)	missense	probably benign	0.04
R6877:Zc3h12d	UTSW	10	7,715,735 (GRCm39)	missense	probably damaging	0.99
R6903:Zc3h12d	UTSW	10	7,743,425 (GRCm39)	missense	probably benign
R6967:Zc3h12d	UTSW	10	7,715,644 (GRCm39)	missense	probably damaging	1.00
R7312:Zc3h12d	UTSW	10	7,743,345 (GRCm39)	missense	probably benign	0.00
R7594:Zc3h12d	UTSW	10	7,738,382 (GRCm39)	missense	probably damaging	1.00
R7622:Zc3h12d	UTSW	10	7,743,033 (GRCm39)	missense	probably damaging	1.00
R7645:Zc3h12d	UTSW	10	7,743,340 (GRCm39)	missense	probably benign
R7769:Zc3h12d	UTSW	10	7,743,390 (GRCm39)	missense	probably benign	0.03
R7864:Zc3h12d	UTSW	10	7,715,723 (GRCm39)	missense	possibly damaging	0.83
R8371:Zc3h12d	UTSW	10	7,715,735 (GRCm39)	frame shift	probably null
R8414:Zc3h12d	UTSW	10	7,715,735 (GRCm39)	frame shift	probably null
R9255:Zc3h12d	UTSW	10	7,729,022 (GRCm39)	missense	probably damaging	1.00
R9470:Zc3h12d	UTSW	10	7,743,321 (GRCm39)	missense	possibly damaging	0.73
Z1177:Zc3h12d	UTSW	10	7,743,572 (GRCm39)	missense	probably damaging	1.00

Posted On

2013-06-28