Mutagenetix > Incidental Mutation

Incidental Mutation 'R6916:Tlcd4'

539336

Institutional Source

Beutler Lab

Gene Symbol

Tlcd4

Ensembl Gene

ENSMUSG00000028132

Gene Name

TLC domain containing 4

Synonyms

C730036B01Rik, 4930577M16Rik, Tmem56

MMRRC Submission

045037-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.083) question?

Stock #

R6916 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

120995657-121076756 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 121000805 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 276 (D276G)

Ref Sequence

ENSEMBL: ENSMUSP00000120821 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029777] [ENSMUST00000128909] [ENSMUST00000135818] [ENSMUST00000155309]

AlphaFold

Q8CGF5

Predicted Effect

possibly damaging
Transcript: ENSMUST00000029777
AA Change: D276G

PolyPhen 2 Score 0.936 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000029777
Gene: ENSMUSG00000028132
AA Change: D276G

Domain	Start	End	E-Value	Type
transmembrane domain	20	42	N/A	INTRINSIC
TLC	57	259	1.5e-47	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000128909
AA Change: D276G

PolyPhen 2 Score 0.936 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000119468
Gene: ENSMUSG00000028132
AA Change: D276G

Domain	Start	End	E-Value	Type
transmembrane domain	20	42	N/A	INTRINSIC
TLC	57	259	1.5e-47	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000135818

SMART Domains

Protein: ENSMUSP00000114755
Gene: ENSMUSG00000028132

Domain	Start	End	E-Value	Type
transmembrane domain	20	42	N/A	INTRINSIC
TLC	57	231	4.68e-26	SMART

Predicted Effect

possibly damaging
Transcript: ENSMUST00000155309
AA Change: D276G

PolyPhen 2 Score 0.936 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000120821
Gene: ENSMUSG00000028132
AA Change: D276G

Domain	Start	End	E-Value	Type
transmembrane domain	20	42	N/A	INTRINSIC
TLC	57	259	1.5e-47	SMART

Meta Mutation Damage Score

0.1259

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

98% (59/60)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	T	A	12: 71,211,318 (GRCm39)	I684K	possibly damaging	Het
Abcg3	T	A	5: 105,122,601 (GRCm39)	R97S	probably benign	Het
Acin1	A	T	14: 54,902,873 (GRCm39)	F160L	probably benign	Het
Aoc1l2	T	A	6: 48,907,987 (GRCm39)	I329N	probably benign	Het
Asb10	T	C	5: 24,742,854 (GRCm39)	D293G	probably damaging	Het
Atp6v1c1	T	C	15: 38,677,825 (GRCm39)	S117P	probably benign	Het
Bahcc1	T	A	11: 120,163,835 (GRCm39)	V711E	probably damaging	Het
Baz2b	A	T	2: 59,799,120 (GRCm39)	S335T	probably benign	Het
Bdkrb2	C	T	12: 105,558,038 (GRCm39)	A93V	probably damaging	Het
Cacna1d	A	T	14: 29,817,321 (GRCm39)	V1247D	probably damaging	Het
Cenpb	A	C	2: 131,021,544 (GRCm39)	F85V	probably benign	Het
Cep112	C	A	11: 108,750,202 (GRCm39)	Q142K	probably damaging	Het
Ciita	T	A	16: 10,327,071 (GRCm39)		probably null	Het
Cnr1	A	G	4: 33,943,897 (GRCm39)	D95G	probably benign	Het
Ctnnd1	A	T	2: 84,439,990 (GRCm39)	D767E	probably benign	Het
Ddx20	T	C	3: 105,587,929 (GRCm39)	N384D	probably damaging	Het
Dnaaf3	T	A	7: 4,530,532 (GRCm39)	D191V	probably damaging	Het
Efna1	T	C	3: 89,183,695 (GRCm39)	N44D	possibly damaging	Het
Errfi1	A	T	4: 150,951,930 (GRCm39)	K453*	probably null	Het
Fam149a	C	A	8: 45,803,443 (GRCm39)	K349N	probably damaging	Het
Fbxl20	T	A	11: 98,004,079 (GRCm39)	I70L	possibly damaging	Het
Flnb	C	T	14: 7,907,171 (GRCm38)	T1248I	probably damaging	Het
Frem2	T	C	3: 53,455,109 (GRCm39)	R2156G	probably damaging	Het
Ftl1	T	C	7: 45,108,964 (GRCm39)	Y31C	probably damaging	Het
Gm5862	G	T	5: 26,224,346 (GRCm39)	H208N	probably benign	Het
Hc	A	T	2: 34,900,044 (GRCm39)	Y1096*	probably null	Het
Hps1	ATCCTCCTCCTCCTCCTCCTCCTC	ATCCTCCTCCTCCTCCTCCTC	19: 42,755,164 (GRCm39)			Het
Ints3	T	C	3: 90,313,641 (GRCm39)	D329G	probably damaging	Het
Irak3	A	T	10: 120,037,270 (GRCm39)	L32Q	probably damaging	Het
Kifbp	T	C	10: 62,401,843 (GRCm39)	T20A	probably benign	Het
Klrb1f	A	T	6: 129,030,774 (GRCm39)	D95V	probably benign	Het
Krt79	C	T	15: 101,844,605 (GRCm39)	D260N	probably benign	Het
Lrp11	C	A	10: 7,484,478 (GRCm39)		probably null	Het
Lrrc10	C	A	10: 116,881,454 (GRCm39)	R43S	possibly damaging	Het
Muc5b	A	T	7: 141,418,454 (GRCm39)	Y3800F	possibly damaging	Het
Myh14	T	C	7: 44,278,737 (GRCm39)	K1003E	probably damaging	Het
Nbeal2	A	G	9: 110,455,176 (GRCm39)	I2567T	probably damaging	Het
Necab2	G	T	8: 120,194,355 (GRCm39)	R277L	probably damaging	Het
Nell1	T	C	7: 50,350,927 (GRCm39)	Y525H	probably benign	Het
Olfm4	T	A	14: 80,251,638 (GRCm39)	M186K	probably damaging	Het
Or10d1c	T	C	9: 38,894,200 (GRCm39)	I47V	probably benign	Het
Or1e29	T	A	11: 73,667,895 (GRCm39)	Q86L	probably benign	Het
Or2h2b-ps1	T	C	17: 37,480,864 (GRCm39)	K225R	probably benign	Het
Pcdhb11	A	T	18: 37,555,434 (GRCm39)	S255C	possibly damaging	Het
Rrbp1	A	T	2: 143,816,518 (GRCm39)	C704S	probably benign	Het
Rsrc1	C	T	3: 66,901,982 (GRCm39)	P44L	unknown	Het
Sh2d3c	C	T	2: 32,642,665 (GRCm39)	R552*	probably null	Het
Sh3d19	A	G	3: 85,992,218 (GRCm39)	E82G	probably benign	Het
Son	T	A	16: 91,451,673 (GRCm39)	L140Q	probably damaging	Het
Svil	G	A	18: 5,114,682 (GRCm39)		probably benign	Het
Syne1	T	C	10: 5,177,912 (GRCm39)	K4854R	probably benign	Het
Tmem202	C	A	9: 59,432,757 (GRCm39)		probably benign	Het
Trak2	T	C	1: 58,949,184 (GRCm39)	T539A	probably benign	Het
Trdn	T	C	10: 33,033,014 (GRCm39)	S80P	probably damaging	Het
Ugt2b37	T	A	5: 87,402,459 (GRCm39)	R57S	probably benign	Het
Usp34	G	A	11: 23,408,023 (GRCm39)	R2616Q	probably damaging	Het
Usp48	T	C	4: 137,365,544 (GRCm39)	Y113H	probably damaging	Het
Vtcn1	G	T	3: 100,795,479 (GRCm39)		probably null	Het
Wdr19	G	A	5: 65,382,677 (GRCm39)	R467Q	possibly damaging	Het
Wdr72	A	G	9: 74,062,321 (GRCm39)	Y489C	probably benign	Het
Wipf1	C	A	2: 73,267,748 (GRCm39)	G217W	probably damaging	Het

Other mutations in Tlcd4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02606:Tlcd4	APN	3	121,022,013 (GRCm39)	missense	possibly damaging	0.94
IGL03339:Tlcd4	APN	3	121,022,489 (GRCm39)	splice site	probably benign
R1295:Tlcd4	UTSW	3	121,000,940 (GRCm39)	missense	probably benign
R1296:Tlcd4	UTSW	3	121,000,940 (GRCm39)	missense	probably benign
R2040:Tlcd4	UTSW	3	121,024,975 (GRCm39)	splice site	probably benign
R2056:Tlcd4	UTSW	3	121,001,070 (GRCm39)	missense	probably benign	0.00
R4541:Tlcd4	UTSW	3	121,028,884 (GRCm39)	start codon destroyed	probably null	0.00
R6044:Tlcd4	UTSW	3	121,001,018 (GRCm39)	missense	probably damaging	0.97
R6261:Tlcd4	UTSW	3	121,028,708 (GRCm39)	missense	possibly damaging	0.86
R7640:Tlcd4	UTSW	3	121,028,690 (GRCm39)	critical splice donor site	probably null
R7911:Tlcd4	UTSW	3	121,022,041 (GRCm39)	missense	probably damaging	0.96
R9404:Tlcd4	UTSW	3	121,028,731 (GRCm39)	missense	probably benign	0.00
RF010:Tlcd4	UTSW	3	121,022,533 (GRCm39)	missense	probably benign	0.00
Z1177:Tlcd4	UTSW	3	121,004,957 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TTCAGAAAAGTTTCCCCACTCC -3'
(R):5'- GTGTACGGAACAGAACCCTAC -3'

Sequencing Primer
(F):5'- AAACCTTTCAGTTTCCATCCATG -3'
(R):5'- GAACCCTACATAAGGTTCGGATTTG -3'

Posted On

2018-11-06