Incidental Mutation 'R6923:Gbp2b'
| ID |
539723 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Gbp2b
|
| Ensembl Gene |
ENSMUSG00000040264 |
| Gene Name |
guanylate binding protein 2b |
| Synonyms |
Mag-1, Mpa-1, Mpa1, Gbp-1, Gbp1 |
| MMRRC Submission |
045381-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R6923 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
3 |
| Chromosomal Location |
142300608-142324940 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 142306320 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Isoleucine to Threonine
at position 131
(I131T)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000029936
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029936]
|
| AlphaFold |
no structure available at present |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000029936
AA Change: I131T
PolyPhen 2
Score 0.009 (Sensitivity: 0.96; Specificity: 0.77)
|
| SMART Domains |
Protein: ENSMUSP00000029936
Gene: ENSMUSG00000040264
AA Change: I131T
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:GBP
|
18 |
280 |
4.1e-122 |
PFAM |
|
Pfam:GBP_C
|
282 |
578 |
5.5e-125 |
PFAM |
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 99.9%
- 10x: 99.2%
- 20x: 97.4%
|
| Validation Efficiency |
100% (59/59) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the guanylate-binding protein (GBP) family. GBPs specifically bind guanine nucleotides (GMP, GDP, and GTP) and contain two of the three consensus motifs found in typical GTP-binding proteins. The encoded protein interacts with a member of the germinal center kinase family. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2017]
PHENOTYPE: Mice homozygous for a targeted allele exhibit increased susceptibility to bacterial infection. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 58 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Albfm1 |
A |
G |
5: 90,725,652 (GRCm39) |
N288S |
probably benign |
Het |
| Ap4b1 |
T |
A |
3: 103,719,530 (GRCm39) |
D81E |
probably benign |
Het |
| Atg16l1 |
A |
T |
1: 87,702,078 (GRCm39) |
|
probably null |
Het |
| Atp11a |
A |
G |
8: 12,906,949 (GRCm39) |
T459A |
probably damaging |
Het |
| Bloc1s5 |
T |
A |
13: 38,815,040 (GRCm39) |
I40F |
probably damaging |
Het |
| Bltp2 |
T |
A |
11: 78,165,452 (GRCm39) |
S1323T |
possibly damaging |
Het |
| Capn5 |
T |
A |
7: 97,778,461 (GRCm39) |
Q386L |
probably damaging |
Het |
| Cbfa2t2 |
C |
T |
2: 154,376,903 (GRCm39) |
H529Y |
probably damaging |
Het |
| Cd3d |
T |
C |
9: 44,897,157 (GRCm39) |
|
probably benign |
Het |
| Cenpa |
A |
G |
5: 30,829,806 (GRCm39) |
|
probably null |
Het |
| Chit1 |
A |
T |
1: 134,077,163 (GRCm39) |
Y322F |
probably null |
Het |
| Cntnap5c |
T |
A |
17: 58,399,345 (GRCm39) |
N399K |
possibly damaging |
Het |
| Dock8 |
A |
T |
19: 25,072,970 (GRCm39) |
T417S |
probably benign |
Het |
| Firrm |
A |
G |
1: 163,814,454 (GRCm39) |
|
probably null |
Het |
| Fkbp2 |
A |
G |
19: 6,956,537 (GRCm39) |
|
|
Het |
| Fsip1 |
G |
A |
2: 118,080,394 (GRCm39) |
R121C |
probably benign |
Het |
| Gm12695 |
T |
C |
4: 96,658,053 (GRCm39) |
N39D |
probably benign |
Het |
| Gm4922 |
T |
C |
10: 18,659,616 (GRCm39) |
R369G |
probably damaging |
Het |
| Gpatch3 |
C |
T |
4: 133,309,836 (GRCm39) |
L390F |
probably damaging |
Het |
| Gpd2 |
G |
A |
2: 57,245,800 (GRCm39) |
M443I |
probably damaging |
Het |
| Gpt2 |
G |
A |
8: 86,244,681 (GRCm39) |
E325K |
probably benign |
Het |
| Hdac1-ps |
A |
G |
17: 78,800,343 (GRCm39) |
T445A |
possibly damaging |
Het |
| Jph3 |
A |
G |
8: 122,480,110 (GRCm39) |
T263A |
possibly damaging |
Het |
| Me3 |
C |
A |
7: 89,495,093 (GRCm39) |
A337E |
probably damaging |
Het |
| Mndal |
A |
C |
1: 173,712,264 (GRCm39) |
|
probably null |
Het |
| Msantd5l |
C |
T |
11: 51,144,808 (GRCm39) |
D158N |
probably damaging |
Het |
| Muc6 |
C |
T |
7: 141,217,453 (GRCm39) |
E2342K |
possibly damaging |
Het |
| Neb |
A |
G |
2: 52,076,076 (GRCm39) |
V5659A |
probably damaging |
Het |
| Nkapd1 |
T |
A |
9: 50,521,610 (GRCm39) |
I104L |
probably benign |
Het |
| Nrxn1 |
G |
A |
17: 91,395,661 (GRCm39) |
A165V |
probably benign |
Het |
| Or5b94 |
T |
A |
19: 12,652,409 (GRCm39) |
I280N |
possibly damaging |
Het |
| Or5b97 |
T |
C |
19: 12,878,676 (GRCm39) |
N156S |
probably benign |
Het |
| Orc2 |
A |
G |
1: 58,539,534 (GRCm39) |
L35S |
probably benign |
Het |
| Pax4 |
A |
G |
6: 28,447,118 (GRCm39) |
|
probably null |
Het |
| Pcdhb7 |
C |
T |
18: 37,475,522 (GRCm39) |
|
probably null |
Het |
| Pla2r1 |
C |
T |
2: 60,345,310 (GRCm39) |
E349K |
probably benign |
Het |
| Polr2a |
C |
T |
11: 69,626,787 (GRCm39) |
A1516T |
probably benign |
Het |
| Pramel23 |
A |
T |
4: 143,425,676 (GRCm39) |
I89N |
probably benign |
Het |
| Prpf38a |
G |
T |
4: 108,427,401 (GRCm39) |
D187E |
possibly damaging |
Het |
| Rdh16f1 |
T |
A |
10: 127,624,737 (GRCm39) |
|
probably null |
Het |
| S100z |
T |
A |
13: 95,615,090 (GRCm39) |
D25V |
probably damaging |
Het |
| Scamp2 |
T |
G |
9: 57,488,895 (GRCm39) |
F199V |
probably damaging |
Het |
| Semp2l2b |
C |
A |
10: 21,943,654 (GRCm39) |
G109C |
probably damaging |
Het |
| Senp2 |
T |
G |
16: 21,830,326 (GRCm39) |
|
probably benign |
Het |
| Sltm |
T |
A |
9: 70,481,892 (GRCm39) |
S365T |
probably damaging |
Het |
| Smg6 |
C |
G |
11: 74,820,169 (GRCm39) |
P147A |
possibly damaging |
Het |
| Spem2 |
T |
A |
11: 69,708,603 (GRCm39) |
R121W |
probably damaging |
Het |
| Sufu |
A |
G |
19: 46,439,405 (GRCm39) |
|
probably null |
Het |
| Syt2 |
T |
C |
1: 134,674,501 (GRCm39) |
V313A |
possibly damaging |
Het |
| Tet2 |
C |
T |
3: 133,185,102 (GRCm39) |
|
probably null |
Het |
| Tfeb |
T |
A |
17: 48,097,908 (GRCm39) |
I232N |
probably benign |
Het |
| Ticrr |
T |
G |
7: 79,341,601 (GRCm39) |
I1062M |
probably damaging |
Het |
| Vmn2r111 |
T |
C |
17: 22,778,032 (GRCm39) |
N549S |
possibly damaging |
Het |
| Vrk2 |
G |
A |
11: 26,439,893 (GRCm39) |
A226V |
probably damaging |
Het |
| Wnk1 |
A |
T |
6: 119,942,639 (GRCm39) |
|
probably benign |
Het |
| Xpo4 |
G |
T |
14: 57,841,168 (GRCm39) |
T505K |
probably benign |
Het |
| Yy1 |
A |
T |
12: 108,759,594 (GRCm39) |
I86F |
probably benign |
Het |
| Zc3h15 |
A |
G |
2: 83,487,400 (GRCm39) |
D73G |
possibly damaging |
Het |
|
| Other mutations in Gbp2b |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01637:Gbp2b
|
APN |
3 |
142,304,073 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01892:Gbp2b
|
APN |
3 |
142,309,381 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL01989:Gbp2b
|
APN |
3 |
142,317,201 (GRCm39) |
missense |
probably benign |
0.19 |
|
IGL02019:Gbp2b
|
APN |
3 |
142,312,751 (GRCm39) |
missense |
possibly damaging |
0.52 |
|
IGL02338:Gbp2b
|
APN |
3 |
142,309,987 (GRCm39) |
missense |
probably benign |
0.09 |
|
IGL02657:Gbp2b
|
APN |
3 |
142,309,873 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03148:Gbp2b
|
APN |
3 |
142,312,642 (GRCm39) |
missense |
probably benign |
0.00 |
|
FR4304:Gbp2b
|
UTSW |
3 |
142,309,413 (GRCm39) |
missense |
probably benign |
0.00 |
|
FR4340:Gbp2b
|
UTSW |
3 |
142,309,413 (GRCm39) |
missense |
probably benign |
0.00 |
|
FR4342:Gbp2b
|
UTSW |
3 |
142,309,413 (GRCm39) |
missense |
probably benign |
0.00 |
|
FR4589:Gbp2b
|
UTSW |
3 |
142,309,413 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0329:Gbp2b
|
UTSW |
3 |
142,313,937 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0345:Gbp2b
|
UTSW |
3 |
142,313,944 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0358:Gbp2b
|
UTSW |
3 |
142,312,550 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0732:Gbp2b
|
UTSW |
3 |
142,312,739 (GRCm39) |
missense |
probably benign |
|
|
R1163:Gbp2b
|
UTSW |
3 |
142,304,857 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1550:Gbp2b
|
UTSW |
3 |
142,312,591 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R1629:Gbp2b
|
UTSW |
3 |
142,316,735 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R1886:Gbp2b
|
UTSW |
3 |
142,314,063 (GRCm39) |
missense |
probably benign |
|
|
R1887:Gbp2b
|
UTSW |
3 |
142,314,063 (GRCm39) |
missense |
probably benign |
|
|
R2188:Gbp2b
|
UTSW |
3 |
142,314,040 (GRCm39) |
missense |
probably benign |
0.44 |
|
R2261:Gbp2b
|
UTSW |
3 |
142,312,496 (GRCm39) |
missense |
probably benign |
0.00 |
|
R3977:Gbp2b
|
UTSW |
3 |
142,309,470 (GRCm39) |
missense |
probably benign |
0.02 |
|
R4718:Gbp2b
|
UTSW |
3 |
142,304,756 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4788:Gbp2b
|
UTSW |
3 |
142,317,171 (GRCm39) |
missense |
probably benign |
0.21 |
|
R4807:Gbp2b
|
UTSW |
3 |
142,304,006 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5042:Gbp2b
|
UTSW |
3 |
142,317,224 (GRCm39) |
missense |
probably benign |
0.03 |
|
R5087:Gbp2b
|
UTSW |
3 |
142,304,015 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5114:Gbp2b
|
UTSW |
3 |
142,303,946 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5414:Gbp2b
|
UTSW |
3 |
142,304,852 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5567:Gbp2b
|
UTSW |
3 |
142,317,126 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R5625:Gbp2b
|
UTSW |
3 |
142,304,806 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5685:Gbp2b
|
UTSW |
3 |
142,313,919 (GRCm39) |
missense |
probably benign |
|
|
R6030:Gbp2b
|
UTSW |
3 |
142,309,414 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6030:Gbp2b
|
UTSW |
3 |
142,309,414 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6408:Gbp2b
|
UTSW |
3 |
142,323,899 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6500:Gbp2b
|
UTSW |
3 |
142,317,252 (GRCm39) |
missense |
probably benign |
0.06 |
|
R6581:Gbp2b
|
UTSW |
3 |
142,313,999 (GRCm39) |
nonsense |
probably null |
|
|
R6582:Gbp2b
|
UTSW |
3 |
142,316,801 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R6847:Gbp2b
|
UTSW |
3 |
142,303,940 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R7120:Gbp2b
|
UTSW |
3 |
142,312,507 (GRCm39) |
missense |
probably benign |
0.01 |
|
R7255:Gbp2b
|
UTSW |
3 |
142,313,878 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7454:Gbp2b
|
UTSW |
3 |
142,303,920 (GRCm39) |
missense |
possibly damaging |
0.75 |
|
R7643:Gbp2b
|
UTSW |
3 |
142,309,370 (GRCm39) |
missense |
probably benign |
0.07 |
|
R8039:Gbp2b
|
UTSW |
3 |
142,323,925 (GRCm39) |
missense |
probably benign |
0.02 |
|
R8312:Gbp2b
|
UTSW |
3 |
142,304,815 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R8312:Gbp2b
|
UTSW |
3 |
142,304,812 (GRCm39) |
missense |
probably benign |
|
|
R8391:Gbp2b
|
UTSW |
3 |
142,309,894 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8418:Gbp2b
|
UTSW |
3 |
142,309,466 (GRCm39) |
missense |
probably benign |
0.01 |
|
R8721:Gbp2b
|
UTSW |
3 |
142,312,705 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R8842:Gbp2b
|
UTSW |
3 |
142,312,576 (GRCm39) |
missense |
probably benign |
|
|
R8849:Gbp2b
|
UTSW |
3 |
142,313,913 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8874:Gbp2b
|
UTSW |
3 |
142,314,040 (GRCm39) |
missense |
probably benign |
0.03 |
|
R8896:Gbp2b
|
UTSW |
3 |
142,309,327 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8992:Gbp2b
|
UTSW |
3 |
142,316,730 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9339:Gbp2b
|
UTSW |
3 |
142,317,178 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9752:Gbp2b
|
UTSW |
3 |
142,313,917 (GRCm39) |
missense |
probably benign |
0.16 |
|
Z1177:Gbp2b
|
UTSW |
3 |
142,310,077 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
| Predicted Primers |
PCR Primer
(F):5'- CCTTTGATATCATAGCTGATGGGG -3'
(R):5'- ACCACTCTGTCTAAGGCATTG -3'
Sequencing Primer
(F):5'- GGACCATTCAGATAAAGGGGATC -3'
(R):5'- TTTCTGGGAAGTAAGGCAAACTCAC -3'
|
| Posted On |
2018-11-06 |
Incidental Mutation