Mutagenetix > Incidental Mutation

Incidental Mutation 'R6931:Nifk'

539983

Institutional Source

Beutler Lab

Gene Symbol

Nifk

Ensembl Gene

ENSMUSG00000026377

Gene Name

nucleolar protein interacting with the FHA domain of MKI67

Synonyms

Mki67ip, C130020J04Rik

MMRRC Submission

045326-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.963) question?

Stock #

R6931 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

118249569-118261552 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 118260078 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Serine at position 163 (L163S)

Ref Sequence

ENSEMBL: ENSMUSP00000108308 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027626] [ENSMUST00000112688] [ENSMUST00000161495]

AlphaFold

Q91VE6

Predicted Effect

possibly damaging
Transcript: ENSMUST00000027626
AA Change: L211S

PolyPhen 2 Score 0.901 (Sensitivity: 0.82; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000027626
Gene: ENSMUSG00000026377
AA Change: L211S

Domain	Start	End	E-Value	Type
low complexity region	34	43	N/A	INTRINSIC
RRM	48	121	1.88e-19	SMART
low complexity region	168	181	N/A	INTRINSIC
Pfam:hNIFK_binding	250	288	4.8e-26	PFAM
low complexity region	304	316	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000112688
AA Change: L163S

PolyPhen 2 Score 0.940 (Sensitivity: 0.80; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000108308
Gene: ENSMUSG00000026377
AA Change: L163S

Domain	Start	End	E-Value	Type
Pfam:RRM_1	20	71	2e-8	PFAM
low complexity region	120	133	N/A	INTRINSIC
Pfam:hNIFK_binding	202	241	9.6e-29	PFAM
low complexity region	256	268	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000161495

SMART Domains

Protein: ENSMUSP00000125006
Gene: ENSMUSG00000026377

Domain	Start	End	E-Value	Type
RRM	21	94	1.88e-19	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.4%
20x: 98.0%

Validation Efficiency

99% (77/78)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that interacts with the forkhead-associated domain of the Ki-67 antigen. The encoded protein may bind RNA and may play a role in mitosis and cell cycle progression. Multiple pseudogenes exist on chromosomes 5, 10, 12, 15, and 19.[provided by RefSeq, Jan 2009]

Allele List at MGI

Other mutations in this stock

Total: 79 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2310003L06Rik	T	A	5: 88,118,561 (GRCm39)	I15N	probably damaging	Het
2900092C05Rik	T	A	7: 12,246,523 (GRCm39)	S6R	unknown	Het
Abca6	T	A	11: 110,135,154 (GRCm39)	L210F	probably benign	Het
Abcc4	T	C	14: 118,765,400 (GRCm39)	Q919R	probably damaging	Het
Adcy1	A	G	11: 7,100,884 (GRCm39)	D811G	possibly damaging	Het
Akna	A	G	4: 63,305,339 (GRCm39)	S476P	probably benign	Het
Ankrd49	T	C	9: 14,694,122 (GRCm39)	N15S	probably benign	Het
Apcdd1	A	G	18: 63,066,979 (GRCm39)	D31G	probably damaging	Het
Aplp1	G	T	7: 30,142,625 (GRCm39)	R106S	probably damaging	Het
Arhgap40	T	C	2: 158,373,138 (GRCm39)	L132S	probably benign	Het
Atp8b5	G	T	4: 43,364,108 (GRCm39)		probably null	Het
Axl	T	C	7: 25,460,858 (GRCm39)	D717G	probably damaging	Het
Bub1	T	A	2: 127,643,302 (GRCm39)	D1014V	probably damaging	Het
Cacna2d4	T	A	6: 119,259,195 (GRCm39)	V603E	possibly damaging	Het
Cnot11	G	C	1: 39,579,002 (GRCm39)	C289S	probably damaging	Het
Coasy	A	G	11: 100,974,407 (GRCm39)	H191R	probably benign	Het
Cyp11a1	A	T	9: 57,932,403 (GRCm39)	N341Y	possibly damaging	Het
Cyp1a2	T	C	9: 57,589,439 (GRCm39)	N125S	probably benign	Het
Cyp2j8	A	T	4: 96,333,018 (GRCm39)		probably null	Het
Dnah9	A	T	11: 66,008,452 (GRCm39)	I791K	possibly damaging	Het
Ecm2	A	T	13: 49,682,487 (GRCm39)	Q505H	probably benign	Het
Fam135a	T	A	1: 24,124,568 (GRCm39)	M1L	probably damaging	Het
Fam171a2	A	G	11: 102,329,260 (GRCm39)	S500P	possibly damaging	Het
Fat3	A	G	9: 15,871,238 (GRCm39)	S3718P	possibly damaging	Het
Frem1	G	A	4: 82,888,914 (GRCm39)	P1085S	probably damaging	Het
Gcfc2	A	G	6: 81,919,966 (GRCm39)	I390V	probably benign	Het
Gemin4	A	G	11: 76,101,782 (GRCm39)	L993P	probably damaging	Het
Ggnbp2	T	A	11: 84,723,993 (GRCm39)	D647V	probably damaging	Het
Gpr84	A	C	15: 103,217,441 (GRCm39)	L212R	probably damaging	Het
Hnrnpu	T	C	1: 178,158,997 (GRCm39)		probably benign	Het
Hspg2	G	T	4: 137,268,031 (GRCm39)	C2116F	probably damaging	Het
Icam4	T	A	9: 20,941,747 (GRCm39)	V249E	probably damaging	Het
Itga1	T	C	13: 115,138,099 (GRCm39)	N429D	probably benign	Het
Kcns1	T	C	2: 164,006,758 (GRCm39)	T402A	probably damaging	Het
Ky	T	A	9: 102,414,826 (GRCm39)	V246E	probably damaging	Het
Marchf1	A	G	8: 66,921,144 (GRCm39)	T529A	probably benign	Het
Med18	C	G	4: 132,187,194 (GRCm39)	V102L	probably damaging	Het
Mlst8	T	C	17: 24,696,249 (GRCm39)	D160G	probably damaging	Het
Mthfd1	T	C	12: 76,350,472 (GRCm39)	I470T	probably benign	Het
Muc1	C	T	3: 89,136,466 (GRCm39)		probably benign	Het
Mup8	G	A	4: 60,220,322 (GRCm39)	L137F	probably damaging	Het
Mybpc1	A	T	10: 88,378,192 (GRCm39)	L341*	probably null	Het
Nacad	A	G	11: 6,551,877 (GRCm39)	F438S	probably benign	Het
Necap2	C	A	4: 140,805,523 (GRCm39)		probably null	Het
Npsr1	A	G	9: 24,201,293 (GRCm39)	I73V	probably benign	Het
Nup50l	T	C	6: 96,142,529 (GRCm39)	T172A	possibly damaging	Het
Oog3	C	T	4: 143,885,923 (GRCm39)	C225Y	probably benign	Het
Or2d2	A	G	7: 106,728,108 (GRCm39)	L164P	probably damaging	Het
Or4b13	A	T	2: 90,083,121 (GRCm39)	C70*	probably null	Het
Or4c100	T	A	2: 88,356,538 (GRCm39)	C204S	possibly damaging	Het
Or4p18	G	A	2: 88,232,408 (GRCm39)	T290I	probably benign	Het
Plagl2	C	A	2: 153,077,863 (GRCm39)	K39N	probably benign	Het
Plcg2	T	A	8: 118,284,058 (GRCm39)	D118E	probably benign	Het
Ppp4r3b	A	T	11: 29,161,786 (GRCm39)	K720I	possibly damaging	Het
Prmt3	A	T	7: 49,478,764 (GRCm39)	T442S	probably benign	Het
Prr14l	G	A	5: 32,988,035 (GRCm39)	H487Y	probably damaging	Het
Psmb3	G	A	11: 97,594,797 (GRCm39)	V63I	probably benign	Het
Psmc6	T	A	14: 45,581,182 (GRCm39)	I326K	possibly damaging	Het
Ptcd1	T	C	5: 145,091,885 (GRCm39)	T405A	probably benign	Het
Rbm33	G	A	5: 28,615,743 (GRCm39)	V29M	probably damaging	Het
Rsrc1	C	T	3: 66,901,982 (GRCm39)	P44L	unknown	Het
Scarb1	T	A	5: 125,361,783 (GRCm39)	I107F	probably damaging	Het
Slc39a12	A	G	2: 14,394,186 (GRCm39)	S19G	probably benign	Het
Slc44a5	T	C	3: 153,964,143 (GRCm39)	V503A	probably benign	Het
Slc9a9	T	C	9: 94,552,139 (GRCm39)	S9P	possibly damaging	Het
Snrnp35	A	C	5: 124,628,764 (GRCm39)	R192S	possibly damaging	Het
Tbx15	T	C	3: 99,259,467 (GRCm39)	L446P	probably damaging	Het
Tlnrd1	A	G	7: 83,531,805 (GRCm39)	F209L	probably benign	Het
Tmprss12	C	T	15: 100,183,149 (GRCm39)	R164C	probably damaging	Het
Tnfsf4	T	A	1: 161,244,644 (GRCm39)	F111Y	possibly damaging	Het
Trib2	A	T	12: 15,843,640 (GRCm39)	M198K	probably benign	Het
Ttll8	A	G	15: 88,798,507 (GRCm39)	S743P	possibly damaging	Het
Ush2a	A	T	1: 188,460,580 (GRCm39)	N2614Y	probably benign	Het
Usp6nl	G	A	2: 6,435,269 (GRCm39)	V343I	possibly damaging	Het
Vrtn	C	A	12: 84,697,016 (GRCm39)	Q589K	probably benign	Het
Zbed5	T	A	5: 129,932,170 (GRCm39)	Y706*	probably null	Het
Zc3h10	A	G	10: 128,380,553 (GRCm39)	V268A	probably damaging	Het
Zfp442	C	T	2: 150,252,860 (GRCm39)		probably null	Het
Zpld2	A	T	4: 133,920,464 (GRCm39)	M567K	probably benign	Het

Other mutations in Nifk

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02718:Nifk	APN	1	118,255,362 (GRCm39)	missense	probably damaging	1.00
R2198:Nifk	UTSW	1	118,257,130 (GRCm39)	missense	probably benign	0.05
R3982:Nifk	UTSW	1	118,257,282 (GRCm39)	missense	possibly damaging	0.95
R4636:Nifk	UTSW	1	118,257,217 (GRCm39)	missense	possibly damaging	0.46
R5061:Nifk	UTSW	1	118,260,669 (GRCm39)	makesense	probably null
R6913:Nifk	UTSW	1	118,260,592 (GRCm39)	missense	possibly damaging	0.85
R7471:Nifk	UTSW	1	118,260,204 (GRCm39)	missense	probably damaging	1.00
R7774:Nifk	UTSW	1	118,255,391 (GRCm39)	missense	possibly damaging	0.46
R8272:Nifk	UTSW	1	118,260,134 (GRCm39)	missense	probably benign	0.16
R9566:Nifk	UTSW	1	118,260,492 (GRCm39)	missense	probably damaging	1.00
Z1177:Nifk	UTSW	1	118,249,630 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- GAGGACAAGCTGTGGTGTGATC -3'
(R):5'- TCCTGTTGACACAAGGGAAGAC -3'

Sequencing Primer
(F):5'- ATCCCGGCTGAGATAGTCATG -3'
(R):5'- GGAAGACCCCTTTTCCTCATTC -3'

Posted On

2018-11-06