Mutagenetix > Incidental Mutation

Incidental Mutation 'R6943:Gvin2'

540656

Institutional Source

Beutler Lab

Gene Symbol

Gvin2

Ensembl Gene

ENSMUSG00000078606

Gene Name

GTPase, very large interferon inducible, family member 2

Synonyms

Gm4070

MMRRC Submission

045057-MU

Accession Numbers

Essential gene?

Not available question?

Stock #

R6943 (G1)

Quality Score

164.009

Status

Not validated

Chromosome

Chromosomal Location

105544346-105603174 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 105551187 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 622 (Q622*)

Ref Sequence

ENSEMBL: ENSMUSP00000135898 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000106766] [ENSMUST00000176467] [ENSMUST00000176994]

AlphaFold

Q80SU7

Predicted Effect

probably null
Transcript: ENSMUST00000106766
AA Change: Q622*

SMART Domains

Protein: ENSMUSP00000102377
Gene: ENSMUSG00000078606
AA Change: Q622*

Domain	Start	End	E-Value	Type
low complexity region	104	116	N/A	INTRINSIC
low complexity region	122	135	N/A	INTRINSIC
Blast:PGAM	860	1554	7e-61	BLAST
coiled coil region	1625	1656	N/A	INTRINSIC
low complexity region	1769	1781	N/A	INTRINSIC
coiled coil region	1851	1877	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000176467
AA Change: Q622*

SMART Domains

Protein: ENSMUSP00000135898
Gene: ENSMUSG00000078606
AA Change: Q622*

Domain	Start	End	E-Value	Type
low complexity region	104	116	N/A	INTRINSIC
low complexity region	122	135	N/A	INTRINSIC
Blast:PGAM	860	1554	7e-61	BLAST
coiled coil region	1625	1656	N/A	INTRINSIC
low complexity region	1769	1781	N/A	INTRINSIC
coiled coil region	1851	1877	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000176994

Coding Region Coverage

1x: 100.0%
3x: 99.8%
10x: 98.9%
20x: 96.2%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aacs	T	A	5: 125,583,362 (GRCm39)		probably null	Het
Arhgef1	A	G	7: 24,623,156 (GRCm39)	I423V	probably benign	Het
Aspm	T	C	1: 139,408,280 (GRCm39)	L2389P	probably damaging	Het
B4galt1	T	C	4: 40,812,860 (GRCm39)	M222V	probably benign	Het
Bsn	C	A	9: 107,985,016 (GRCm39)	G3013C	unknown	Het
Camsap2	T	C	1: 136,232,187 (GRCm39)	H136R	probably damaging	Het
Ccar1	A	G	10: 62,582,715 (GRCm39)	V1047A	unknown	Het
Ccdc80	A	G	16: 44,915,445 (GRCm39)	E67G	probably benign	Het
Ces3b	G	T	8: 105,819,710 (GRCm39)	G511V	probably damaging	Het
Cops6	T	A	5: 138,161,790 (GRCm39)	H224Q	probably benign	Het
Dnah5	A	T	15: 28,235,866 (GRCm39)	D331V	probably damaging	Het
Dusp29	T	C	14: 21,727,135 (GRCm39)	D171G	probably damaging	Het
Echs1	G	A	7: 139,688,007 (GRCm39)	T266I	probably damaging	Het
Ehmt2	G	A	17: 35,130,406 (GRCm39)	C1017Y	probably damaging	Het
Epb41l5	C	T	1: 119,536,859 (GRCm39)	R344Q	probably damaging	Het
Fcgbp	G	A	7: 27,791,477 (GRCm39)	V913I	probably benign	Het
Foxd4	A	G	19: 24,877,240 (GRCm39)	F320S	probably damaging	Het
Frmpd4	C	T	X: 166,387,579 (GRCm39)	R133K	probably damaging	Het
Glmp	A	G	3: 88,233,917 (GRCm39)	Y258C	probably damaging	Het
Gphn	C	G	12: 78,538,955 (GRCm39)	S200R	possibly damaging	Het
H2-Q7	T	G	17: 35,658,560 (GRCm39)	M66R	probably benign	Het
Hivep2	T	A	10: 14,004,058 (GRCm39)	C219S	probably damaging	Het
Hlcs	A	T	16: 93,942,261 (GRCm39)	M90K	possibly damaging	Het
Itga8	C	A	2: 12,160,182 (GRCm39)		probably null	Het
Klrk1	T	A	6: 129,598,203 (GRCm39)	M1L	possibly damaging	Het
Kmo	T	A	1: 175,485,941 (GRCm39)	F385I	probably benign	Het
Lrit1	G	C	14: 36,782,052 (GRCm39)	V242L	probably damaging	Het
Lrrc3c	A	G	11: 98,490,075 (GRCm39)	D144G	probably damaging	Het
Lyzl4	C	T	9: 121,412,047 (GRCm39)	W123*	probably null	Het
Map3k1	A	G	13: 111,909,246 (GRCm39)	S77P	probably benign	Het
Mark1	T	C	1: 184,630,984 (GRCm39)	T709A	probably damaging	Het
Nbr1	A	T	11: 101,468,777 (GRCm39)	I878F	probably damaging	Het
Nedd1	A	T	10: 92,547,168 (GRCm39)	H118Q	probably damaging	Het
Nfatc1	C	T	18: 80,678,770 (GRCm39)	G873S	probably damaging	Het
Ngly1	T	G	14: 16,283,467 (GRCm38)	N415K	probably damaging	Het
Nol6	C	A	4: 41,118,962 (GRCm39)	R677L	probably damaging	Het
Nop9	T	C	14: 55,990,270 (GRCm39)	V471A	probably benign	Het
Notch4	A	G	17: 34,802,577 (GRCm39)	N1333D	probably benign	Het
Nsun2	G	A	13: 69,778,152 (GRCm39)	G478R	probably damaging	Het
Or10x4	T	A	1: 174,219,407 (GRCm39)	Y257*	probably null	Het
Or1ad8	T	A	11: 50,898,153 (GRCm39)	M118K	probably damaging	Het
Or5m9b	T	C	2: 85,905,264 (GRCm39)	F60S	probably damaging	Het
Or8g34	A	T	9: 39,373,159 (GRCm39)	Y144F	probably benign	Het
Pcp4l1	T	C	1: 171,002,022 (GRCm39)	E46G	possibly damaging	Het
Plek2	T	C	12: 78,936,083 (GRCm39)		probably null	Het
Rbl1	T	G	2: 157,030,206 (GRCm39)	I434L	probably benign	Het
Ryr2	A	G	13: 11,581,834 (GRCm39)	V4777A	possibly damaging	Het
Sgk1	T	C	10: 21,758,593 (GRCm39)	F19S	probably damaging	Het
Stard9	C	T	2: 120,532,677 (GRCm39)	A2978V	probably benign	Het
Syne1	T	C	10: 5,033,940 (GRCm39)	T7711A	probably benign	Het
Taf10	G	A	7: 105,393,383 (GRCm39)	T48I	probably benign	Het
Tgfbi	T	G	13: 56,784,989 (GRCm39)	S649A	possibly damaging	Het
Thbs3	T	C	3: 89,132,171 (GRCm39)	V749A	probably benign	Het
Tmem241	G	T	18: 12,180,641 (GRCm39)	H218N	possibly damaging	Het
Tmem266	C	T	9: 55,284,851 (GRCm39)		probably benign	Het
Tnc	T	C	4: 63,900,982 (GRCm39)	I1586M	probably damaging	Het
Ubr4	T	A	4: 139,164,442 (GRCm39)	C2676*	probably null	Het
Unc13a	A	T	8: 72,105,021 (GRCm39)	I747N	probably damaging	Het
Vangl1	A	T	3: 102,073,097 (GRCm39)		probably benign	Het
Vmn1r184	C	T	7: 25,966,563 (GRCm39)	T103I	possibly damaging	Het
Vmn1r204	T	C	13: 22,740,474 (GRCm39)	V35A	probably benign	Het
Vps13b	A	G	15: 35,448,835 (GRCm39)	H603R	possibly damaging	Het
Zfp105	A	G	9: 122,754,303 (GRCm39)	D44G	probably benign	Het
Zfp11	T	C	5: 129,735,152 (GRCm39)	H103R	probably damaging	Het
Zfp335	A	G	2: 164,736,795 (GRCm39)	F947L	possibly damaging	Het

Other mutations in Gvin2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01323:Gvin2	APN	7	105,546,009 (GRCm39)	missense	possibly damaging	0.52
IGL02657:Gvin2	APN	7	105,545,972 (GRCm39)	missense	probably damaging	1.00
R0755:Gvin2	UTSW	7	105,545,892 (GRCm39)	missense	possibly damaging	0.81
R6913:Gvin2	UTSW	7	105,551,187 (GRCm39)	nonsense	probably null
R6914:Gvin2	UTSW	7	105,551,187 (GRCm39)	nonsense	probably null
R6921:Gvin2	UTSW	7	105,551,187 (GRCm39)	nonsense	probably null
R6941:Gvin2	UTSW	7	105,551,187 (GRCm39)	nonsense	probably null
R6944:Gvin2	UTSW	7	105,551,187 (GRCm39)	nonsense	probably null
R6945:Gvin2	UTSW	7	105,551,187 (GRCm39)	nonsense	probably null
R7208:Gvin2	UTSW	7	105,551,386 (GRCm39)	missense	possibly damaging	0.58
R7400:Gvin2	UTSW	7	105,551,247 (GRCm39)	missense	probably benign
R8477:Gvin2	UTSW	7	105,548,133 (GRCm39)	missense	possibly damaging	0.66
R8493:Gvin2	UTSW	7	105,548,088 (GRCm39)	missense	probably benign	0.09
R8880:Gvin2	UTSW	7	105,551,120 (GRCm39)	missense	probably benign	0.00
R9176:Gvin2	UTSW	7	105,551,262 (GRCm39)	missense	possibly damaging	0.93

Predicted Primers

PCR Primer
(F):5'- GGTGACCTCATATGTAGCCG -3'
(R):5'- GGAGGTTTCTGATCCTGAAGAAC -3'

Sequencing Primer
(F):5'- GACCTCATATGTAGCCGTTCTTTCTG -3'
(R):5'- GTTTCTGATCCTGAAGAACAACTTAC -3'

Posted On

2018-11-06