Incidental Mutation 'R6958:Lrit1'
ID 541602
Institutional Source Beutler Lab
Gene Symbol Lrit1
Ensembl Gene ENSMUSG00000041044
Gene Name leucine-rich repeat, immunoglobulin-like and transmembrane domains 1
Synonyms Lrrc21
MMRRC Submission 045009-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.066) question?
Stock # R6958 (G1)
Quality Score 219.009
Status Not validated
Chromosome 14
Chromosomal Location 36776787-36786903 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to C at 36782052 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Leucine at position 242 (V242L)
Ref Sequence ENSEMBL: ENSMUSP00000113964 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000120052]
AlphaFold Q8K099
Predicted Effect probably damaging
Transcript: ENSMUST00000120052
AA Change: V242L

PolyPhen 2 Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
SMART Domains Protein: ENSMUSP00000113964
Gene: ENSMUSG00000041044
AA Change: V242L

DomainStartEndE-ValueType
signal peptide 1 21 N/A INTRINSIC
LRRNT 22 63 1.97e-3 SMART
LRR 82 105 1.03e1 SMART
LRR 106 129 3e1 SMART
LRR 130 152 1.12e1 SMART
LRR_TYP 154 177 4.47e-3 SMART
LRRCT 201 253 2.04e-7 SMART
IGc2 267 336 6.55e-8 SMART
FN3 429 506 2.22e0 SMART
transmembrane domain 531 553 N/A INTRINSIC
low complexity region 581 595 N/A INTRINSIC
low complexity region 597 608 N/A INTRINSIC
Meta Mutation Damage Score 0.1859 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.2%
  • 20x: 96.9%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit impaired synaptic communication of cone photoreceptors. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 62 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2410004B18Rik A G 3: 145,649,558 (GRCm39) D159G probably benign Het
Ahnak A G 19: 8,992,579 (GRCm39) N4621S possibly damaging Het
Ankrd16 C T 2: 11,784,604 (GRCm39) A144V probably damaging Het
Bhmt1b G A 18: 87,775,046 (GRCm39) E190K probably benign Het
Ccdc14 T C 16: 34,511,176 (GRCm39) V2A probably damaging Het
Ccdc187 C T 2: 26,179,731 (GRCm39) V243I probably benign Het
Cdk12 A T 11: 98,132,525 (GRCm39) I985F unknown Het
Cfap65 T C 1: 74,971,058 (GRCm39) T87A possibly damaging Het
Cilp2 G A 8: 70,335,190 (GRCm39) P603S probably benign Het
Cntnap5b A G 1: 100,202,197 (GRCm39) E348G probably benign Het
Cpa6 C T 1: 10,665,913 (GRCm39) V42M probably damaging Het
Cpsf4 A G 5: 145,112,402 (GRCm39) I115V probably benign Het
Dnah11 G T 12: 117,897,544 (GRCm39) P3562Q probably damaging Het
Dnah9 A G 11: 65,967,167 (GRCm39) F1664L probably damaging Het
Dpysl3 T C 18: 43,571,067 (GRCm39) Q69R probably benign Het
Ebf3 T C 7: 136,800,994 (GRCm39) T455A possibly damaging Het
Eif2ak3 T A 6: 70,869,667 (GRCm39) C785S probably benign Het
Elk4 T A 1: 131,945,570 (GRCm39) F149L probably damaging Het
Fgf14 A G 14: 124,914,009 (GRCm39) W41R probably benign Het
Fmnl1 T A 11: 103,062,140 (GRCm39) M1K probably null Het
Foxk2 A T 11: 121,190,563 (GRCm39) Q568L probably benign Het
Fryl T G 5: 73,231,272 (GRCm39) I1602L possibly damaging Het
Gfm2 A G 13: 97,282,744 (GRCm39) I75V probably damaging Het
Gm3233 T A 10: 77,595,369 (GRCm39) probably benign Het
Gnb1 G T 4: 155,627,651 (GRCm39) probably null Het
Gphn G T 12: 78,727,073 (GRCm39) V662L possibly damaging Het
Il3 A C 11: 54,157,937 (GRCm39) V47G probably benign Het
Iqgap3 A G 3: 88,020,673 (GRCm39) D401G possibly damaging Het
Kdm3b T A 18: 34,941,336 (GRCm39) S276T probably benign Het
Krtap6-2 A G 16: 89,216,698 (GRCm39) S90P unknown Het
Lars1 C T 18: 42,369,704 (GRCm39) V394I probably damaging Het
Lrp10 A G 14: 54,707,278 (GRCm39) probably benign Het
Ltn1 A T 16: 87,194,679 (GRCm39) C1407S probably benign Het
Lzts2 G T 19: 45,012,582 (GRCm39) probably benign Het
Msantd2 A G 9: 37,434,753 (GRCm39) E331G probably damaging Het
Myo15a G A 11: 60,394,451 (GRCm39) G1218S probably benign Het
Myom2 G A 8: 15,167,741 (GRCm39) A1109T probably null Het
Nhp2 A G 11: 51,513,934 (GRCm39) T118A probably benign Het
Nup155 A G 15: 8,176,638 (GRCm39) Y972C probably damaging Het
Nxpe2 A T 9: 48,237,566 (GRCm39) C230S probably damaging Het
Or12d13 T C 17: 37,647,308 (GRCm39) I272V probably benign Het
Or51g2 A G 7: 102,623,091 (GRCm39) L36P possibly damaging Het
Or5w8 T C 2: 87,688,295 (GRCm39) Y259H probably damaging Het
Pfkfb4 A T 9: 108,839,615 (GRCm39) N244I probably damaging Het
Pi4ka C T 16: 17,143,091 (GRCm39) R24Q probably damaging Het
Pkd2l2 C A 18: 34,542,543 (GRCm39) Y8* probably null Het
Pramel20 A T 4: 143,297,829 (GRCm39) D83V probably damaging Het
Ptprb T A 10: 116,113,153 (GRCm39) N44K probably benign Het
Sds G A 5: 120,619,537 (GRCm39) V149M probably damaging Het
Slc22a30 A G 19: 8,364,065 (GRCm39) F204L probably damaging Het
Slc26a7 C T 4: 14,506,442 (GRCm39) A636T probably benign Het
Slc27a1 C T 8: 72,038,083 (GRCm39) A577V possibly damaging Het
Spata13 A T 14: 60,989,300 (GRCm39) T319S possibly damaging Het
Styxl2 T A 1: 165,935,565 (GRCm39) D211V probably damaging Het
Tdrd3 A G 14: 87,694,532 (GRCm39) D29G probably damaging Het
Tex15 A T 8: 34,060,899 (GRCm39) I110L probably benign Het
Treml2 A G 17: 48,615,180 (GRCm39) T222A probably damaging Het
Trpd52l3 A T 19: 29,981,546 (GRCm39) L100F probably damaging Het
Ttf2 C T 3: 100,853,248 (GRCm39) E975K probably benign Het
Vmn1r193 T A 13: 22,404,144 (GRCm39) probably benign Het
Xpo1 A G 11: 23,235,855 (GRCm39) T648A probably benign Het
Zfp641 C T 15: 98,190,832 (GRCm39) V71I possibly damaging Het
Other mutations in Lrit1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01621:Lrit1 APN 14 36,782,112 (GRCm39) missense probably damaging 0.98
IGL01676:Lrit1 APN 14 36,779,394 (GRCm39) missense probably damaging 1.00
IGL02011:Lrit1 APN 14 36,784,280 (GRCm39) missense probably damaging 1.00
PIT4142001:Lrit1 UTSW 14 36,783,998 (GRCm39) missense probably damaging 1.00
R0194:Lrit1 UTSW 14 36,783,677 (GRCm39) missense probably damaging 1.00
R0348:Lrit1 UTSW 14 36,782,182 (GRCm39) missense probably damaging 1.00
R1444:Lrit1 UTSW 14 36,783,928 (GRCm39) missense probably benign
R1500:Lrit1 UTSW 14 36,784,091 (GRCm39) missense probably benign 0.23
R1884:Lrit1 UTSW 14 36,783,710 (GRCm39) missense possibly damaging 0.94
R2880:Lrit1 UTSW 14 36,779,394 (GRCm39) missense probably damaging 1.00
R4784:Lrit1 UTSW 14 36,784,193 (GRCm39) missense possibly damaging 0.79
R4855:Lrit1 UTSW 14 36,783,773 (GRCm39) missense possibly damaging 0.75
R5100:Lrit1 UTSW 14 36,784,171 (GRCm39) missense possibly damaging 0.74
R5365:Lrit1 UTSW 14 36,784,099 (GRCm39) missense probably benign 0.00
R5474:Lrit1 UTSW 14 36,783,943 (GRCm39) missense probably benign
R5475:Lrit1 UTSW 14 36,776,958 (GRCm39) missense probably benign 0.00
R5614:Lrit1 UTSW 14 36,783,911 (GRCm39) missense probably benign 0.39
R5688:Lrit1 UTSW 14 36,784,385 (GRCm39) missense possibly damaging 0.66
R5926:Lrit1 UTSW 14 36,776,966 (GRCm39) missense probably damaging 1.00
R6063:Lrit1 UTSW 14 36,776,945 (GRCm39) missense probably benign 0.05
R6920:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R6940:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R6941:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R6943:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R6945:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R6957:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R6959:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R6960:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R6962:Lrit1 UTSW 14 36,782,052 (GRCm39) missense probably damaging 0.99
R7784:Lrit1 UTSW 14 36,783,737 (GRCm39) missense probably benign
R8124:Lrit1 UTSW 14 36,784,005 (GRCm39) missense probably benign 0.06
R8952:Lrit1 UTSW 14 36,783,664 (GRCm39) missense probably damaging 1.00
R9106:Lrit1 UTSW 14 36,776,891 (GRCm39) missense unknown
R9297:Lrit1 UTSW 14 36,783,993 (GRCm39) missense probably damaging 1.00
R9425:Lrit1 UTSW 14 36,784,208 (GRCm39) missense possibly damaging 0.89
R9712:Lrit1 UTSW 14 36,782,084 (GRCm39) nonsense probably null
Predicted Primers PCR Primer
(F):5'- TCTTCCCAGAGGAGAAATGGAG -3'
(R):5'- CCACTTGGTTGCTCACACAC -3'

Sequencing Primer
(F):5'- CTGGTTCTGAAGATCTGAGGTTAACC -3'
(R):5'- ACACCTGTGCCATTGAGTG -3'
Posted On 2018-11-28