Mutagenetix > Incidental Mutation

Incidental Mutation 'R7000:Usp17lb'

544478

Institutional Source

Beutler Lab

Gene Symbol

Usp17lb

Ensembl Gene

ENSMUSG00000062369

Gene Name

ubiquitin specific peptidase 17-like B

Synonyms

Dub1a

MMRRC Submission

045105-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.130) question?

Stock #

R7000 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

104489464-104491790 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 104490492 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 145 (M145K)

Ref Sequence

ENSEMBL: ENSMUSP00000075822 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000076501] [ENSMUST00000106814]

AlphaFold

E9Q9U0

Predicted Effect

probably damaging
Transcript: ENSMUST00000076501
AA Change: M145K

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000075822
Gene: ENSMUSG00000062369
AA Change: M145K

Domain	Start	End	E-Value	Type
Pfam:UCH	50	345	3.2e-55	PFAM
Pfam:UCH_1	51	327	6.8e-26	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000106814
AA Change: M144K

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000102427
Gene: ENSMUSG00000062369
AA Change: M144K

Domain	Start	End	E-Value	Type
Pfam:UCH	49	344	2.3e-61	PFAM
Pfam:UCH_1	50	326	1.5e-30	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 82 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcb1a	G	A	5: 8,752,823 (GRCm39)	A525T	probably benign	Het
Abcc6	A	G	7: 45,654,946 (GRCm39)	I515T	possibly damaging	Het
Abi1	G	A	2: 22,832,053 (GRCm39)	A420V	probably damaging	Het
Abtb2	A	T	2: 103,542,787 (GRCm39)	I887F	possibly damaging	Het
Acap3	G	A	4: 155,988,306 (GRCm39)	G602S	possibly damaging	Het
Auts2	T	A	5: 131,469,056 (GRCm39)	T754S	probably benign	Het
AW551984	T	C	9: 39,512,085 (GRCm39)	R12G	probably benign	Het
Bcan	G	A	3: 87,895,686 (GRCm39)	R817*	probably null	Het
Bmp10	A	G	6: 87,411,175 (GRCm39)	T323A	probably benign	Het
Bpnt1	T	C	1: 185,082,053 (GRCm39)	L165P	probably damaging	Het
Casz1	G	A	4: 149,013,693 (GRCm39)	A86T	probably damaging	Het
Ccn3	A	T	15: 54,615,743 (GRCm39)	T303S	probably damaging	Het
Cd1d2	T	C	3: 86,895,080 (GRCm39)	F189L	probably benign	Het
Cep72	A	G	13: 74,206,444 (GRCm39)	M126T	probably damaging	Het
Cep85l	T	A	10: 53,174,295 (GRCm39)	T483S	probably damaging	Het
Cfi	C	A	3: 129,666,522 (GRCm39)	T415K	probably damaging	Het
Chrna7	A	G	7: 62,755,787 (GRCm39)	L253S	probably damaging	Het
Col4a4	T	C	1: 82,475,051 (GRCm39)	H596R	unknown	Het
Cplx3	G	C	9: 57,523,231 (GRCm39)	Q109E	probably benign	Het
Cyp2j8	A	T	4: 96,335,588 (GRCm39)	M402K	probably benign	Het
Cyp3a16	T	A	5: 145,399,980 (GRCm39)		probably null	Het
Dhdh	T	C	7: 45,124,698 (GRCm39)	K332E	possibly damaging	Het
Dnah11	C	A	12: 117,981,396 (GRCm39)	C2590F	probably damaging	Het
Dnah17	T	C	11: 117,916,528 (GRCm39)		probably null	Het
Dtx1	A	G	5: 120,833,148 (GRCm39)	Y97H	probably damaging	Het
Duxf1	T	C	10: 58,058,814 (GRCm39)	T647A	possibly damaging	Het
Elf1	A	G	14: 79,808,208 (GRCm39)	D183G	probably damaging	Het
Esyt3	A	C	9: 99,204,206 (GRCm39)	L94R	probably damaging	Het
Exoc3	A	G	13: 74,330,285 (GRCm39)	Y521H	probably benign	Het
F5	C	T	1: 164,007,075 (GRCm39)	T293M	probably damaging	Het
Fam118b	A	T	9: 35,146,560 (GRCm39)	H102Q	probably damaging	Het
Flad1	T	C	3: 89,309,549 (GRCm39)		probably benign	Het
Flrt3	G	A	2: 140,502,804 (GRCm39)	R275*	probably null	Het
Fndc7	G	A	3: 108,783,964 (GRCm39)	A215V	probably benign	Het
Fscn1	T	A	5: 142,946,382 (GRCm39)	V60E	probably damaging	Het
Gm17175	A	T	14: 51,811,418 (GRCm39)	M1K	probably null	Het
Gpatch2l	G	A	12: 86,290,958 (GRCm39)	R47H	probably damaging	Het
Gprc6a	T	C	10: 51,491,143 (GRCm39)	S694G	probably benign	Het
Iglon5	A	T	7: 43,126,254 (GRCm39)		probably null	Het
Iqch	T	C	9: 63,361,892 (GRCm39)	T874A	probably benign	Het
Lamc2	T	A	1: 153,041,873 (GRCm39)	H87L	possibly damaging	Het
Ldlrad1	T	A	4: 107,066,777 (GRCm39)	D37E	probably benign	Het
Loxhd1	T	C	18: 77,460,129 (GRCm39)		probably null	Het
Lxn	T	G	3: 67,369,704 (GRCm39)	E60D	probably benign	Het
Man2b2	A	G	5: 36,979,213 (GRCm39)	W276R	probably damaging	Het
Mast1	T	C	8: 85,655,598 (GRCm39)	Y182C	probably damaging	Het
Mroh8	C	T	2: 157,058,897 (GRCm39)	R923Q	probably benign	Het
Obscn	A	G	11: 59,026,864 (GRCm39)	L113P	probably damaging	Het
Ocln	C	T	13: 100,671,470 (GRCm39)		probably null	Het
Oog2	A	T	4: 143,921,897 (GRCm39)	Q269L	probably damaging	Het
Or52e8	G	A	7: 104,624,338 (GRCm39)	P285S	probably damaging	Het
Or5b113	A	G	19: 13,341,987 (GRCm39)		probably benign	Het
Osbpl3	A	G	6: 50,274,137 (GRCm39)	S826P	probably damaging	Het
Otogl	T	C	10: 107,615,692 (GRCm39)	N1869S	probably benign	Het
Pamr1	G	A	2: 102,441,968 (GRCm39)	D186N	probably damaging	Het
Pcdhga8	T	A	18: 37,859,946 (GRCm39)	I334K	probably benign	Het
Pde7b	A	G	10: 20,319,038 (GRCm39)	S95P	probably damaging	Het
Pik3cg	A	T	12: 32,242,128 (GRCm39)	V994E	probably damaging	Het
Pkp1	T	C	1: 135,817,692 (GRCm39)	M148V	probably benign	Het
Plbd1	T	G	6: 136,589,836 (GRCm39)	K461Q	probably benign	Het
Pmfbp1	A	G	8: 110,257,221 (GRCm39)	E594G	possibly damaging	Het
Pold3	A	T	7: 99,755,865 (GRCm39)	H60Q	probably damaging	Het
Polr3gl	C	T	3: 96,487,783 (GRCm39)	R52Q	possibly damaging	Het
Ptgds	A	G	2: 25,357,828 (GRCm39)		probably null	Het
Scarb2	T	C	5: 92,601,934 (GRCm39)	D320G	probably benign	Het
Sdk2	T	C	11: 113,693,995 (GRCm39)	Y1812C	probably damaging	Het
Skint8	C	A	4: 111,794,222 (GRCm39)	T204N	probably benign	Het
Slc23a2	T	C	2: 131,936,123 (GRCm39)	Q49R	possibly damaging	Het
Slc26a7	T	C	4: 14,552,476 (GRCm39)	Q227R	probably benign	Het
Sntn	C	T	14: 13,679,108 (GRCm38)	T94I	probably damaging	Het
Spem2	C	T	11: 69,708,582 (GRCm39)	G128S	probably benign	Het
Supt16	A	T	14: 52,408,907 (GRCm39)	S822R	probably damaging	Het
Syn3	T	C	10: 85,916,116 (GRCm39)	Y290C	probably damaging	Het
Tdrd6	C	G	17: 43,938,599 (GRCm39)	E816D	probably benign	Het
Tln1	A	T	4: 43,556,302 (GRCm39)	M72K	probably damaging	Het
Tlnrd1	A	G	7: 83,531,987 (GRCm39)	V148A	probably damaging	Het
Trim24	C	A	6: 37,935,613 (GRCm39)	T832K	probably benign	Het
Ubr4	C	T	4: 139,141,715 (GRCm39)	A1267V	probably damaging	Het
Vmn1r178	T	A	7: 23,593,762 (GRCm39)	M270K	probably benign	Het
Vmn2r70	A	T	7: 85,208,819 (GRCm39)	C553S	probably damaging	Het
Vps37c	G	T	19: 10,687,693 (GRCm39)	E51D	probably damaging	Het
Zfp62	T	G	11: 49,107,206 (GRCm39)	Y432*	probably null	Het

Other mutations in Usp17lb

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01559:Usp17lb	APN	7	104,490,436 (GRCm39)	missense	probably damaging	0.98
IGL01571:Usp17lb	APN	7	104,489,588 (GRCm39)	missense	possibly damaging	0.59
IGL01624:Usp17lb	APN	7	104,491,720 (GRCm39)	utr 5 prime	probably benign
IGL02582:Usp17lb	APN	7	104,489,937 (GRCm39)	missense	probably damaging	1.00
IGL03193:Usp17lb	APN	7	104,490,484 (GRCm39)	missense	possibly damaging	0.46
R0399:Usp17lb	UTSW	7	104,490,358 (GRCm39)	missense	possibly damaging	0.81
R0420:Usp17lb	UTSW	7	104,489,746 (GRCm39)	missense	probably benign
R1202:Usp17lb	UTSW	7	104,491,695 (GRCm39)	missense	probably damaging	0.98
R1628:Usp17lb	UTSW	7	104,490,048 (GRCm39)	missense	probably damaging	1.00
R2085:Usp17lb	UTSW	7	104,489,622 (GRCm39)	missense	possibly damaging	0.73
R2214:Usp17lb	UTSW	7	104,490,639 (GRCm39)	missense	probably benign	0.36
R2283:Usp17lb	UTSW	7	104,489,859 (GRCm39)	missense	possibly damaging	0.68
R2866:Usp17lb	UTSW	7	104,489,955 (GRCm39)	missense	probably damaging	1.00
R3433:Usp17lb	UTSW	7	104,490,855 (GRCm39)	missense	possibly damaging	0.89
R5004:Usp17lb	UTSW	7	104,490,884 (GRCm39)	missense	probably benign	0.00
R5090:Usp17lb	UTSW	7	104,490,290 (GRCm39)	missense	probably benign	0.06
R5143:Usp17lb	UTSW	7	104,490,685 (GRCm39)	missense	probably damaging	1.00
R5366:Usp17lb	UTSW	7	104,489,615 (GRCm39)	missense	possibly damaging	0.95
R5568:Usp17lb	UTSW	7	104,490,415 (GRCm39)	missense	probably damaging	1.00
R5605:Usp17lb	UTSW	7	104,489,847 (GRCm39)	missense	probably benign	0.00
R5647:Usp17lb	UTSW	7	104,489,881 (GRCm39)	missense	possibly damaging	0.92
R5981:Usp17lb	UTSW	7	104,490,394 (GRCm39)	missense	probably damaging	1.00
R5999:Usp17lb	UTSW	7	104,489,552 (GRCm39)	missense	probably damaging	0.99
R6114:Usp17lb	UTSW	7	104,489,571 (GRCm39)	missense	possibly damaging	0.87
R6185:Usp17lb	UTSW	7	104,490,631 (GRCm39)	missense	probably benign	0.22
R6279:Usp17lb	UTSW	7	104,489,898 (GRCm39)	missense	probably damaging	1.00
R6300:Usp17lb	UTSW	7	104,489,898 (GRCm39)	missense	probably damaging	1.00
R6891:Usp17lb	UTSW	7	104,490,307 (GRCm39)	missense	probably benign	0.02
R7137:Usp17lb	UTSW	7	104,490,798 (GRCm39)	missense	probably benign	0.15
R7318:Usp17lb	UTSW	7	104,490,340 (GRCm39)	missense	probably benign	0.03
R7372:Usp17lb	UTSW	7	104,490,913 (GRCm39)	splice site	probably null
R7809:Usp17lb	UTSW	7	104,490,420 (GRCm39)	missense	probably damaging	1.00
R7834:Usp17lb	UTSW	7	104,490,718 (GRCm39)	missense	probably damaging	1.00
R8008:Usp17lb	UTSW	7	104,490,481 (GRCm39)	missense	possibly damaging	0.82
R8283:Usp17lb	UTSW	7	104,490,013 (GRCm39)	missense	probably damaging	0.98
R8385:Usp17lb	UTSW	7	104,489,830 (GRCm39)	missense	possibly damaging	0.82
R8942:Usp17lb	UTSW	7	104,490,583 (GRCm39)	missense	possibly damaging	0.49
R8996:Usp17lb	UTSW	7	104,490,889 (GRCm39)	missense	probably benign	0.17
R9598:Usp17lb	UTSW	7	104,489,718 (GRCm39)	missense	probably benign	0.07
R9697:Usp17lb	UTSW	7	104,490,495 (GRCm39)	missense	possibly damaging	0.69
X0021:Usp17lb	UTSW	7	104,490,523 (GRCm39)	missense	probably damaging	1.00
Z1088:Usp17lb	UTSW	7	104,490,336 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- TCTCTGTATCCTGCAAGGCTTG -3'
(R):5'- CAGGAGCACAGTCAAACCTG -3'

Sequencing Primer
(F):5'- ACTCTGAACTGAGCTGATATCCAGG -3'
(R):5'- GGAGCACAGTCAAACCTGTTGTTC -3'

Posted On

2019-05-13