Mutagenetix > Incidental Mutation

Incidental Mutation 'R7019:Zcchc4'

545496

Institutional Source

Beutler Lab

Gene Symbol

Zcchc4

Ensembl Gene

ENSMUSG00000029179

Gene Name

zinc finger, CCHC domain containing 4

Synonyms

4930449I23Rik

MMRRC Submission

045120-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.168) question?

Stock #

R7019 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

52932751-52982007 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 52941375 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 57 (T57S)

Ref Sequence

ENSEMBL: ENSMUSP00000031077 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000031077] [ENSMUST00000113904]

AlphaFold

Q8BKW4

Predicted Effect

probably benign
Transcript: ENSMUST00000031077
AA Change: T57S

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000031077
Gene: ENSMUSG00000029179
AA Change: T57S

Domain	Start	End	E-Value	Type
Pfam:zf-GRF	37	81	2.9e-19	PFAM
Pfam:N6-adenineMlase	168	337	5.1e-11	PFAM
ZnF_C2HC	442	458	1.27e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000113904
AA Change: T57S

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000109537
Gene: ENSMUSG00000029179
AA Change: T57S

Domain	Start	End	E-Value	Type
Pfam:zf-GRF	37	81	2.4e-17	PFAM
Pfam:N6-adenineMlase	168	338	7.1e-11	PFAM
ZnF_C2HC	442	458	1.27e-2	SMART
low complexity region	464	482	N/A	INTRINSIC

Predicted Effect

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

100% (61/61)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abat	A	T	16: 8,436,395 (GRCm39)	K414*	probably null	Het
Aco1	T	A	4: 40,186,376 (GRCm39)	I596N	probably damaging	Het
Adgre1	A	C	17: 57,717,945 (GRCm39)	D319A	probably damaging	Het
Birc6	T	C	17: 74,916,340 (GRCm39)	V445A	probably benign	Het
Btd	A	C	14: 31,389,062 (GRCm39)	Q261P	probably damaging	Het
Btd	G	T	14: 31,389,063 (GRCm39)	Q261H	possibly damaging	Het
C7	T	A	15: 5,075,164 (GRCm39)	Y176F	probably benign	Het
Ccdc102a	T	C	8: 95,636,431 (GRCm39)	S287G	probably benign	Het
Ccdc178	T	A	18: 22,283,495 (GRCm39)	T12S	probably benign	Het
Cnga4	G	T	7: 105,055,036 (GRCm39)	A104S	probably benign	Het
Col10a1	G	T	10: 34,270,947 (GRCm39)	L306F	probably damaging	Het
Cpne5	T	C	17: 29,445,196 (GRCm39)	D36G	probably damaging	Het
Csmd2	G	A	4: 128,262,856 (GRCm39)	D681N		Het
Cspg4b	C	T	13: 113,488,284 (GRCm39)	T102I	probably benign	Het
Cstl1	A	G	2: 148,597,223 (GRCm39)	M75V	probably benign	Het
Cyp26a1	T	C	19: 37,687,260 (GRCm39)	L149P	probably damaging	Het
D630045J12Rik	T	G	6: 38,171,570 (GRCm39)	E866A	probably benign	Het
Dlec1	C	T	9: 118,941,490 (GRCm39)	P292L	probably benign	Het
Dpp3	T	G	19: 4,966,817 (GRCm39)	E402A	possibly damaging	Het
Egf	T	C	3: 129,511,713 (GRCm39)		probably null	Het
Epha5	T	C	5: 84,564,321 (GRCm39)	Q15R	possibly damaging	Het
Esyt3	A	G	9: 99,197,338 (GRCm39)	F831L	probably benign	Het
Fam50b	G	A	13: 34,931,084 (GRCm39)	E187K	possibly damaging	Het
Fut7	A	G	2: 25,315,792 (GRCm39)	D350G	probably benign	Het
Gab1	C	A	8: 81,511,446 (GRCm39)	E466D	probably damaging	Het
Glrp1	A	T	1: 88,430,890 (GRCm39)	M160K	unknown	Het
Gngt1	T	C	6: 3,994,088 (GRCm39)		probably null	Het
Gprc6a	A	T	10: 51,507,508 (GRCm39)	V7E	possibly damaging	Het
Idh3b	A	T	2: 130,122,886 (GRCm39)	V301D	probably damaging	Het
Ifi202b	A	C	1: 173,791,524 (GRCm39)	C385G	probably benign	Het
Ilvbl	T	A	10: 78,414,920 (GRCm39)	L261Q	probably damaging	Het
Irx6	T	A	8: 93,405,362 (GRCm39)	L410Q	probably damaging	Het
Ism2	T	C	12: 87,346,437 (GRCm39)	M15V	unknown	Het
Itih5	C	A	2: 10,195,138 (GRCm39)	R177S	probably damaging	Het
Klra3	C	T	6: 130,304,087 (GRCm39)	G202R	probably damaging	Het
Krt7	T	C	15: 101,311,851 (GRCm39)	V103A	probably damaging	Het
Lama3	T	C	18: 12,661,475 (GRCm39)	S2145P	probably damaging	Het
Mlph	A	G	1: 90,869,428 (GRCm39)	R477G	probably damaging	Het
Mybpc1	T	A	10: 88,379,581 (GRCm39)	L653F	probably damaging	Het
Myrfl	A	G	10: 116,617,852 (GRCm39)		probably null	Het
Myrip	T	G	9: 120,251,573 (GRCm39)	L232R	probably damaging	Het
Nrdc	A	T	4: 108,885,999 (GRCm39)	H126L	probably benign	Het
Or4n5	A	T	14: 50,133,124 (GRCm39)	I45N	probably damaging	Het
Or5p50	G	T	7: 107,422,365 (GRCm39)	L104I	probably benign	Het
Or8c11	T	A	9: 38,290,098 (GRCm39)	L307Q	possibly damaging	Het
Pcdhb10	T	A	18: 37,546,056 (GRCm39)	N377K	probably damaging	Het
Pigt	CCAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGAT	CCAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGATCTGTAACCACAGGCCAGTGAGTAGGTTTGTCTCTGTCTAGTGTGGAT	2: 164,341,589 (GRCm39)		probably null	Het
Prkdc	A	C	16: 15,587,830 (GRCm39)	I2572L	probably benign	Het
Ptpro	C	A	6: 137,357,476 (GRCm39)	D322E	probably benign	Het
R3hcc1	A	G	14: 69,941,574 (GRCm39)	I332T	probably damaging	Het
Rab8a	T	C	8: 72,915,227 (GRCm39)	F9L	probably damaging	Het
Ranbp3l	A	T	15: 9,057,241 (GRCm39)	K165N	probably damaging	Het
Rock2	T	A	12: 17,027,741 (GRCm39)	C1353S	probably damaging	Het
Rsad2	T	A	12: 26,506,418 (GRCm39)	M1L	possibly damaging	Het
Tymp	A	T	15: 89,260,484 (GRCm39)		probably null	Het
Vmn1r104	A	G	7: 20,268,491 (GRCm39)	M244V	probably benign	Het
Vmn1r232	G	A	17: 21,133,547 (GRCm39)	T351M	possibly damaging	Het
Vmn2r50	A	G	7: 9,784,172 (GRCm39)	Y101H	probably benign	Het
Vmn2r57	A	G	7: 41,078,089 (GRCm39)	L123P	probably damaging	Het
Wdr17	T	C	8: 55,134,488 (GRCm39)	N331D	probably damaging	Het
Wdr47	C	T	3: 108,521,671 (GRCm39)	Q89*	probably null	Het

Other mutations in Zcchc4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00587:Zcchc4	APN	5	52,973,511 (GRCm39)	missense	probably benign	0.05
IGL00953:Zcchc4	APN	5	52,965,638 (GRCm39)	missense	probably damaging	1.00
IGL01860:Zcchc4	APN	5	52,965,698 (GRCm39)	missense	probably damaging	1.00
IGL02248:Zcchc4	APN	5	52,953,418 (GRCm39)	missense	probably damaging	1.00
IGL02536:Zcchc4	APN	5	52,965,658 (GRCm39)	missense	probably damaging	1.00
R0060:Zcchc4	UTSW	5	52,964,420 (GRCm39)	missense	possibly damaging	0.67
R0060:Zcchc4	UTSW	5	52,964,420 (GRCm39)	missense	possibly damaging	0.67
R0573:Zcchc4	UTSW	5	52,953,321 (GRCm39)	missense	probably damaging	1.00
R0634:Zcchc4	UTSW	5	52,940,550 (GRCm39)	missense	probably benign	0.15
R1353:Zcchc4	UTSW	5	52,964,419 (GRCm39)	missense	probably benign	0.03
R1791:Zcchc4	UTSW	5	52,953,932 (GRCm39)	missense	probably damaging	1.00
R1854:Zcchc4	UTSW	5	52,973,168 (GRCm39)	missense	probably damaging	1.00
R2108:Zcchc4	UTSW	5	52,953,474 (GRCm39)	missense	probably damaging	0.99
R2696:Zcchc4	UTSW	5	52,953,573 (GRCm39)	missense	probably damaging	1.00
R2991:Zcchc4	UTSW	5	52,961,780 (GRCm39)	missense	probably damaging	1.00
R3894:Zcchc4	UTSW	5	52,941,442 (GRCm39)	missense	probably damaging	1.00
R4523:Zcchc4	UTSW	5	52,941,409 (GRCm39)	missense	probably damaging	1.00
R4672:Zcchc4	UTSW	5	52,953,947 (GRCm39)	missense	probably benign	0.00
R4772:Zcchc4	UTSW	5	52,953,549 (GRCm39)	missense	possibly damaging	0.83
R4905:Zcchc4	UTSW	5	52,953,992 (GRCm39)	missense	probably damaging	1.00
R4954:Zcchc4	UTSW	5	52,976,559 (GRCm39)	missense	probably damaging	1.00
R5093:Zcchc4	UTSW	5	52,953,952 (GRCm39)	missense	probably benign	0.38
R5371:Zcchc4	UTSW	5	52,942,512 (GRCm39)	missense	probably benign	0.19
R5401:Zcchc4	UTSW	5	52,964,419 (GRCm39)	missense	probably benign	0.03
R5755:Zcchc4	UTSW	5	52,973,511 (GRCm39)	missense	probably benign	0.00
R6110:Zcchc4	UTSW	5	52,953,486 (GRCm39)	missense	possibly damaging	0.95
R6244:Zcchc4	UTSW	5	52,940,503 (GRCm39)	missense	probably benign	0.00
R6465:Zcchc4	UTSW	5	52,976,618 (GRCm39)	missense	probably benign	0.03
R6906:Zcchc4	UTSW	5	52,980,976 (GRCm39)	missense	possibly damaging	0.66
R7363:Zcchc4	UTSW	5	52,942,510 (GRCm39)	missense	possibly damaging	0.88
R7643:Zcchc4	UTSW	5	52,965,635 (GRCm39)	missense	possibly damaging	0.85
R8097:Zcchc4	UTSW	5	52,953,333 (GRCm39)	missense	probably benign	0.34
R8158:Zcchc4	UTSW	5	52,973,260 (GRCm39)	missense	probably damaging	1.00
R8372:Zcchc4	UTSW	5	52,953,506 (GRCm39)	missense	probably damaging	1.00
R8545:Zcchc4	UTSW	5	52,976,741 (GRCm39)	intron	probably benign
R8755:Zcchc4	UTSW	5	52,976,724 (GRCm39)	missense	unknown
R9414:Zcchc4	UTSW	5	52,953,964 (GRCm39)	missense	probably benign	0.00
R9530:Zcchc4	UTSW	5	52,953,568 (GRCm39)	frame shift	probably null

Predicted Primers

PCR Primer
(F):5'- TCAGTGTTGCAATGGAAGAAAA -3'
(R):5'- CACATCTGTATCAAAGTTCAGAGTTAA -3'

Sequencing Primer
(F):5'- CTTGGTGTAGACTACTGCT -3'
(R):5'- TGGTCTACAGAATCAGTTCCAGGAC -3'

Posted On

2019-05-13