Incidental Mutation 'R7046:Egf'
| ID |
547301 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Egf
|
| Ensembl Gene |
ENSMUSG00000028017 |
| Gene Name |
epidermal growth factor |
| Synonyms |
|
| MMRRC Submission |
045144-MU
|
| Accession Numbers |
|
| Essential gene? |
Non essential
(E-score: 0.000)
|
| Stock # |
R7046 (G1)
|
| Quality Score |
225.009 |
|
Status
|
Validated
|
| Chromosome |
3 |
| Chromosomal Location |
129471223-129548971 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
A to T
at 129548607 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Tryptophan to Arginine
at position 3
(W3R)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000029653
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000029653]
|
| AlphaFold |
P01132 |
| PDB Structure |
ROLE OF THE 6-20 DISULFIDE BRIDGE IN THE STRUCTURE AND ACTIVITY OF EPIDERMAL GROWTH FACTOR, NMR, 20 STRUCTURES [SOLUTION NMR]
SOLUTION STRUCTURE OF MURINE EPIDERMAL GROWTH FACTOR DETERMINED BY NMR SPECTROSCOPY AND REFINED BY ENERGY MINIMIZATION WITH RESTRAINTS [SOLUTION NMR]
THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS [SOLUTION NMR]
THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS [SOLUTION NMR]
THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS [SOLUTION NMR]
THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS [SOLUTION NMR]
SOLUTION STRUCTURE THE MEGF/TGFALPHA44-50 CHIMERIC GROWTH FACTOR [SOLUTION NMR]
SOLUTION STRUCTURE OF MURINE EPIDERMAL GROWTH FACTOR DETERMINED BY NMR SPECTROSCOPY AND REFINED BY ENERGY MINIMIZATION WITH RESTRAINTS [SOLUTION NMR]
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000029653
AA Change: W3R
|
| SMART Domains |
Protein: ENSMUSP00000029653
Gene: ENSMUSG00000028017
AA Change: W3R
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
10 |
19 |
N/A |
INTRINSIC |
|
LY
|
74 |
115 |
1.81e-3 |
SMART |
|
LY
|
116 |
157 |
4.16e-3 |
SMART |
|
LY
|
158 |
199 |
6.86e-4 |
SMART |
|
LY
|
200 |
244 |
1.06e-4 |
SMART |
|
EGF_like
|
330 |
361 |
7.86e-1 |
SMART |
|
EGF_CA
|
362 |
402 |
2.4e-8 |
SMART |
|
EGF
|
406 |
443 |
8.65e-1 |
SMART |
|
EGF
|
444 |
483 |
5.79e-2 |
SMART |
|
LY
|
510 |
552 |
1.1e-7 |
SMART |
|
LY
|
553 |
595 |
4.32e-10 |
SMART |
|
LY
|
596 |
639 |
6.05e-14 |
SMART |
|
LY
|
640 |
682 |
2.89e-11 |
SMART |
|
LY
|
683 |
724 |
1.3e-4 |
SMART |
|
EGF
|
750 |
787 |
6.21e-2 |
SMART |
|
EGF
|
841 |
876 |
9.13e0 |
SMART |
|
EGF_CA
|
877 |
918 |
5.92e-8 |
SMART |
|
EGF_like
|
919 |
959 |
3.56e-4 |
SMART |
|
EGF
|
981 |
1019 |
2.79e-4 |
SMART |
|
transmembrane domain
|
1039 |
1061 |
N/A |
INTRINSIC |
|
low complexity region
|
1080 |
1099 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.7%
- 20x: 99.0%
|
| Validation Efficiency |
100% (63/63) |
| MGI Phenotype |
FUNCTION: This gene encodes epidermal growth factor (EGF), the founding member of the EGF family of growth factors that are implicated in cell proliferation and differentiation. The encoded protein can localize to the membrane and function in juxtacrine signaling or undergo proteolytic processing to generate a soluble form of the hormone. Mice lacking the encoded protein do not exhibit an abnormal phenotype but transgenic mice overexpressing the encoded protein exhibit hypospermatogenesis. [provided by RefSeq, Jul 2016]
PHENOTYPE: Null mutants have normal phenotype. Females triply null, for this locus and the amphiregulin and transforming growth factor alpha genes, are unable to nurse due to impaired mammary gland development and show mild integument and digestive system anomalies. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 65 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Abcc8 |
T |
C |
7: 45,772,364 (GRCm39) |
Y805C |
probably damaging |
Het |
| Aoc1l3 |
T |
A |
6: 48,964,512 (GRCm39) |
D173E |
probably benign |
Het |
| Cabp7 |
T |
A |
11: 4,688,886 (GRCm39) |
I195F |
probably damaging |
Het |
| Camsap1 |
T |
C |
2: 25,835,201 (GRCm39) |
N317S |
probably damaging |
Het |
| Ccdc127 |
T |
G |
13: 74,500,994 (GRCm39) |
L4V |
probably damaging |
Het |
| Ccdc7a |
T |
C |
8: 129,774,100 (GRCm39) |
E145G |
probably damaging |
Het |
| Cdh10 |
T |
A |
15: 19,013,287 (GRCm39) |
V629D |
probably damaging |
Het |
| Cdh23 |
A |
C |
10: 60,214,530 (GRCm39) |
L1497R |
probably damaging |
Het |
| Chsy3 |
A |
G |
18: 59,542,875 (GRCm39) |
K671R |
probably benign |
Het |
| Clca4b |
T |
C |
3: 144,621,367 (GRCm39) |
Y569C |
probably damaging |
Het |
| Cnga1 |
T |
C |
5: 72,786,696 (GRCm39) |
|
probably benign |
Het |
| Cyp51 |
T |
A |
5: 4,150,188 (GRCm39) |
E178D |
probably damaging |
Het |
| Defa30 |
T |
A |
8: 21,625,471 (GRCm39) |
N78K |
probably benign |
Het |
| Disp1 |
C |
A |
1: 182,869,030 (GRCm39) |
R1130L |
probably damaging |
Het |
| Dnah14 |
G |
T |
1: 181,450,568 (GRCm39) |
C727F |
probably benign |
Het |
| Egfem1 |
G |
A |
3: 29,136,364 (GRCm39) |
|
probably null |
Het |
| Epb41l1 |
G |
T |
2: 156,368,812 (GRCm39) |
V682L |
possibly damaging |
Het |
| Etv1 |
A |
G |
12: 38,834,369 (GRCm39) |
|
probably null |
Het |
| Faap100 |
A |
G |
11: 120,268,200 (GRCm39) |
F191S |
possibly damaging |
Het |
| Fmo1 |
T |
A |
1: 162,667,263 (GRCm39) |
D184V |
possibly damaging |
Het |
| Ghrl |
A |
G |
6: 113,696,344 (GRCm39) |
L16P |
probably damaging |
Het |
| Gria4 |
T |
A |
9: 4,420,278 (GRCm39) |
L861F |
probably damaging |
Het |
| Gsr |
T |
A |
8: 34,185,090 (GRCm39) |
M428K |
probably damaging |
Het |
| Hspa5 |
C |
T |
2: 34,663,204 (GRCm39) |
P127L |
probably damaging |
Het |
| Kbtbd12 |
A |
G |
6: 88,595,497 (GRCm39) |
M111T |
possibly damaging |
Het |
| Krtap21-1 |
G |
T |
16: 89,200,623 (GRCm39) |
Y6* |
probably null |
Het |
| Lin9 |
A |
G |
1: 180,494,935 (GRCm39) |
D219G |
probably damaging |
Het |
| Lrrc38 |
A |
G |
4: 143,076,739 (GRCm39) |
M1V |
probably null |
Het |
| Macc1 |
T |
G |
12: 119,410,773 (GRCm39) |
F514V |
probably benign |
Het |
| Madcam1 |
C |
T |
10: 79,504,139 (GRCm39) |
R242C |
probably benign |
Het |
| Mfhas1 |
T |
C |
8: 36,131,944 (GRCm39) |
S1037P |
probably benign |
Het |
| Micall2 |
C |
T |
5: 139,694,699 (GRCm39) |
|
probably benign |
Het |
| Mtr |
C |
A |
13: 12,205,095 (GRCm39) |
A1122S |
possibly damaging |
Het |
| Muc6 |
T |
A |
7: 141,226,456 (GRCm39) |
|
probably benign |
Het |
| Myh15 |
T |
A |
16: 48,929,662 (GRCm39) |
C529* |
probably null |
Het |
| Napsa |
T |
C |
7: 44,234,509 (GRCm39) |
V247A |
probably damaging |
Het |
| Nr2c2 |
A |
G |
6: 92,135,338 (GRCm39) |
T309A |
probably damaging |
Het |
| Or1e26 |
A |
T |
11: 73,480,558 (GRCm39) |
I2K |
probably benign |
Het |
| Or1q1 |
T |
A |
2: 36,887,173 (GRCm39) |
V117E |
probably benign |
Het |
| Or2n1b |
A |
T |
17: 38,459,691 (GRCm39) |
M71L |
probably benign |
Het |
| Osgepl1 |
A |
T |
1: 53,360,710 (GRCm39) |
I384F |
possibly damaging |
Het |
| Otud4 |
C |
T |
8: 80,377,671 (GRCm39) |
L111F |
possibly damaging |
Het |
| Pds5b |
A |
G |
5: 150,673,385 (GRCm39) |
Y481C |
probably damaging |
Het |
| Pdzrn4 |
T |
A |
15: 92,668,303 (GRCm39) |
Y818* |
probably null |
Het |
| Pin1rt1 |
T |
C |
2: 104,544,767 (GRCm39) |
S122G |
probably benign |
Het |
| Pkdcc |
A |
T |
17: 83,531,687 (GRCm39) |
Y487F |
probably damaging |
Het |
| Plxna4 |
C |
T |
6: 32,493,440 (GRCm39) |
C392Y |
probably damaging |
Het |
| Psd4 |
T |
G |
2: 24,284,985 (GRCm39) |
M283R |
probably benign |
Het |
| Ralgds |
G |
T |
2: 28,430,741 (GRCm39) |
G68W |
probably damaging |
Het |
| Rmdn2 |
T |
A |
17: 79,928,808 (GRCm39) |
I20N |
probably damaging |
Het |
| Sestd1 |
A |
G |
2: 77,022,910 (GRCm39) |
V486A |
probably benign |
Het |
| Skic8 |
T |
A |
9: 54,626,539 (GRCm39) |
D275V |
probably damaging |
Het |
| Spmap2 |
G |
T |
10: 79,422,796 (GRCm39) |
D35E |
probably benign |
Het |
| Tango6 |
A |
G |
8: 107,533,748 (GRCm39) |
H958R |
possibly damaging |
Het |
| Taok3 |
C |
T |
5: 117,411,771 (GRCm39) |
R857C |
probably damaging |
Het |
| Tasor |
A |
T |
14: 27,194,392 (GRCm39) |
L1197F |
probably damaging |
Het |
| Trio |
T |
C |
15: 27,832,137 (GRCm39) |
E1245G |
probably damaging |
Het |
| Usp19 |
C |
T |
9: 108,374,334 (GRCm39) |
H763Y |
possibly damaging |
Het |
| Vmn1r185 |
A |
G |
7: 26,310,651 (GRCm39) |
S285P |
probably damaging |
Het |
| Vmn1r45 |
T |
G |
6: 89,910,538 (GRCm39) |
Y144S |
probably benign |
Het |
| Vwa3b |
G |
A |
1: 37,212,959 (GRCm39) |
E152K |
probably benign |
Het |
| Xrcc5 |
G |
A |
1: 72,433,875 (GRCm39) |
M731I |
probably benign |
Het |
| Zfp619 |
G |
A |
7: 39,186,787 (GRCm39) |
S939N |
possibly damaging |
Het |
| Zfp874a |
C |
A |
13: 67,590,418 (GRCm39) |
C422F |
probably damaging |
Het |
| Zfp948 |
A |
G |
17: 21,808,719 (GRCm39) |
D637G |
possibly damaging |
Het |
|
| Other mutations in Egf |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00272:Egf
|
APN |
3 |
129,505,098 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL00579:Egf
|
APN |
3 |
129,491,447 (GRCm39) |
missense |
probably benign |
0.36 |
|
IGL01307:Egf
|
APN |
3 |
129,533,642 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01314:Egf
|
APN |
3 |
129,479,909 (GRCm39) |
missense |
probably benign |
0.16 |
|
IGL01360:Egf
|
APN |
3 |
129,533,669 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01367:Egf
|
APN |
3 |
129,496,104 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL01610:Egf
|
APN |
3 |
129,499,909 (GRCm39) |
splice site |
probably benign |
|
|
IGL01721:Egf
|
APN |
3 |
129,491,371 (GRCm39) |
nonsense |
probably null |
|
|
IGL01803:Egf
|
APN |
3 |
129,530,415 (GRCm39) |
missense |
probably benign |
0.09 |
|
IGL01866:Egf
|
APN |
3 |
129,529,529 (GRCm39) |
missense |
probably benign |
0.03 |
|
IGL02001:Egf
|
APN |
3 |
129,510,417 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02141:Egf
|
APN |
3 |
129,533,631 (GRCm39) |
nonsense |
probably null |
|
|
IGL02209:Egf
|
APN |
3 |
129,500,956 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
IGL02347:Egf
|
APN |
3 |
129,472,026 (GRCm39) |
missense |
probably benign |
0.17 |
|
IGL02821:Egf
|
APN |
3 |
129,496,128 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02902:Egf
|
APN |
3 |
129,474,796 (GRCm39) |
missense |
probably benign |
0.34 |
|
IGL03114:Egf
|
APN |
3 |
129,530,529 (GRCm39) |
missense |
probably damaging |
0.98 |
|
PIT4151001:Egf
|
UTSW |
3 |
129,496,198 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0200:Egf
|
UTSW |
3 |
129,531,198 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0200:Egf
|
UTSW |
3 |
129,499,882 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0463:Egf
|
UTSW |
3 |
129,531,198 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0463:Egf
|
UTSW |
3 |
129,499,882 (GRCm39) |
missense |
probably benign |
0.00 |
|
R0507:Egf
|
UTSW |
3 |
129,474,828 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R0801:Egf
|
UTSW |
3 |
129,496,234 (GRCm39) |
splice site |
probably benign |
|
|
R1495:Egf
|
UTSW |
3 |
129,506,655 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1535:Egf
|
UTSW |
3 |
129,484,427 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1626:Egf
|
UTSW |
3 |
129,479,864 (GRCm39) |
missense |
possibly damaging |
0.55 |
|
R1702:Egf
|
UTSW |
3 |
129,484,460 (GRCm39) |
missense |
probably benign |
0.17 |
|
R1906:Egf
|
UTSW |
3 |
129,518,873 (GRCm39) |
missense |
probably benign |
0.01 |
|
R2184:Egf
|
UTSW |
3 |
129,517,007 (GRCm39) |
nonsense |
probably null |
|
|
R3842:Egf
|
UTSW |
3 |
129,491,442 (GRCm39) |
nonsense |
probably null |
|
|
R3918:Egf
|
UTSW |
3 |
129,490,509 (GRCm39) |
missense |
probably null |
0.22 |
|
R4073:Egf
|
UTSW |
3 |
129,529,618 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4074:Egf
|
UTSW |
3 |
129,529,618 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4075:Egf
|
UTSW |
3 |
129,529,618 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4307:Egf
|
UTSW |
3 |
129,512,744 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4321:Egf
|
UTSW |
3 |
129,499,783 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4617:Egf
|
UTSW |
3 |
129,484,442 (GRCm39) |
missense |
probably benign |
0.02 |
|
R4646:Egf
|
UTSW |
3 |
129,513,925 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4674:Egf
|
UTSW |
3 |
129,511,689 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4798:Egf
|
UTSW |
3 |
129,510,327 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4931:Egf
|
UTSW |
3 |
129,505,117 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4992:Egf
|
UTSW |
3 |
129,505,179 (GRCm39) |
splice site |
probably null |
|
|
R5166:Egf
|
UTSW |
3 |
129,529,489 (GRCm39) |
missense |
probably benign |
|
|
R5179:Egf
|
UTSW |
3 |
129,479,936 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5230:Egf
|
UTSW |
3 |
129,511,673 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R6043:Egf
|
UTSW |
3 |
129,530,434 (GRCm39) |
missense |
probably benign |
0.09 |
|
R6119:Egf
|
UTSW |
3 |
129,530,421 (GRCm39) |
missense |
probably benign |
0.00 |
|
R6493:Egf
|
UTSW |
3 |
129,512,737 (GRCm39) |
start gained |
probably benign |
|
|
R6639:Egf
|
UTSW |
3 |
129,530,481 (GRCm39) |
missense |
probably benign |
0.22 |
|
R6936:Egf
|
UTSW |
3 |
129,474,853 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R7019:Egf
|
UTSW |
3 |
129,511,713 (GRCm39) |
splice site |
probably null |
|
|
R7463:Egf
|
UTSW |
3 |
129,533,664 (GRCm39) |
missense |
probably benign |
0.39 |
|
R7472:Egf
|
UTSW |
3 |
129,479,912 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R7723:Egf
|
UTSW |
3 |
129,499,786 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7920:Egf
|
UTSW |
3 |
129,529,489 (GRCm39) |
missense |
probably benign |
|
|
R7952:Egf
|
UTSW |
3 |
129,533,645 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8098:Egf
|
UTSW |
3 |
129,484,486 (GRCm39) |
missense |
probably benign |
0.09 |
|
R8344:Egf
|
UTSW |
3 |
129,548,592 (GRCm39) |
missense |
unknown |
|
|
R8557:Egf
|
UTSW |
3 |
129,548,600 (GRCm39) |
missense |
unknown |
|
|
R8912:Egf
|
UTSW |
3 |
129,531,164 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
R9091:Egf
|
UTSW |
3 |
129,529,449 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9159:Egf
|
UTSW |
3 |
129,472,026 (GRCm39) |
missense |
probably benign |
0.17 |
|
R9270:Egf
|
UTSW |
3 |
129,529,449 (GRCm39) |
critical splice donor site |
probably null |
|
|
R9526:Egf
|
UTSW |
3 |
129,491,421 (GRCm39) |
missense |
probably benign |
|
|
R9544:Egf
|
UTSW |
3 |
129,511,617 (GRCm39) |
missense |
probably benign |
0.16 |
|
R9588:Egf
|
UTSW |
3 |
129,511,617 (GRCm39) |
missense |
probably benign |
0.16 |
|
R9630:Egf
|
UTSW |
3 |
129,518,844 (GRCm39) |
missense |
possibly damaging |
0.76 |
|
R9639:Egf
|
UTSW |
3 |
129,513,949 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R9751:Egf
|
UTSW |
3 |
129,548,538 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9772:Egf
|
UTSW |
3 |
129,499,756 (GRCm39) |
missense |
probably benign |
0.01 |
|
R9776:Egf
|
UTSW |
3 |
129,530,514 (GRCm39) |
missense |
probably damaging |
0.99 |
|
X0011:Egf
|
UTSW |
3 |
129,504,947 (GRCm39) |
missense |
probably benign |
0.19 |
|
Z1176:Egf
|
UTSW |
3 |
129,491,366 (GRCm39) |
critical splice donor site |
probably null |
|
|
| Predicted Primers |
PCR Primer
(F):5'- CAGACACCTAGAGGCATTGTC -3'
(R):5'- GGGAGAAATCAGTCACCTGC -3'
Sequencing Primer
(F):5'- TAGAGGCATTGTCCCGGACAG -3'
(R):5'- ATCAGTCACCTGCAGGCCTTG -3'
|
| Posted On |
2019-05-13 |
Incidental Mutation