Mutagenetix > Incidental Mutation

Incidental Mutation 'R7055:Catsper2'

547827

Institutional Source

Beutler Lab

Gene Symbol

Catsper2

Ensembl Gene

ENSMUSG00000033486

Gene Name

cation channel, sperm associated 2

Synonyms

MMRRC Submission

045152-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.113) question?

Stock #

R7055 (G1)

Quality Score

126.466

Status

Not validated

Chromosome

Chromosomal Location

121223112-121244273 bp(-) (GRCm39)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

TAGGATGGCTTTTCTCAGGATAGCTTTTCTCAGGATGGCTTTTCTCAGGATAGCTTTTCTCAGGATGGCTTTTCTCAGGATAGCTTTTCT to TAGGATGGCTTTTCTCAGGATAGCTTTTCTCAGGATGGCTTTTCTCAGGATAGCTTTTCT at 121228053 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000119091 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038073] [ENSMUST00000154604]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000038073

SMART Domains

Protein: ENSMUSP00000037222
Gene: ENSMUSG00000033486

Domain	Start	End	E-Value	Type
low complexity region	78	91	N/A	INTRINSIC
Pfam:Ion_trans	105	350	1e-35	PFAM
low complexity region	422	447	N/A	INTRINSIC
internal_repeat_1	450	473	3.72e-11	PROSPERO
internal_repeat_1	465	488	3.72e-11	PROSPERO
low complexity region	491	502	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154604

SMART Domains

Protein: ENSMUSP00000119091
Gene: ENSMUSG00000033486

Domain	Start	End	E-Value	Type
low complexity region	78	91	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Calcium ions play a primary role in the regulation of sperm motility. This gene belongs to a family of putative cation channels that are specific to spermatozoa and localize to the flagellum. The protein family features a single repeat with six membrane-spanning segments and a predicted calcium-selective pore region. This gene is part of a tandem repeat on chromosome 15q15; the second copy of this gene is thought to be a pseudogene. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2014]
PHENOTYPE: Homozygous null male mice are infertile due to a sperm motility defect. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700113H08Rik	T	C	10: 87,062,083 (GRCm39)	S178P	probably damaging	Het
2610008E11Rik	C	T	10: 78,903,681 (GRCm39)	E212K	probably damaging	Het
Abcc4	A	T	14: 118,832,197 (GRCm39)	L736*	probably null	Het
Acmsd	A	T	1: 127,681,570 (GRCm39)	M178L	probably benign	Het
Adpgk	T	A	9: 59,220,476 (GRCm39)	M266K	possibly damaging	Het
Aldh1b1	G	A	4: 45,802,909 (GRCm39)	R149H	possibly damaging	Het
Aox1	A	G	1: 58,338,927 (GRCm39)	T307A	probably benign	Het
C1galt1	T	C	6: 7,866,585 (GRCm39)	Y144H	probably damaging	Het
Cabin1	G	C	10: 75,579,117 (GRCm39)	Q440E	probably benign	Het
Casq2	A	G	3: 102,049,561 (GRCm39)	S231G	probably damaging	Het
Cdan1	A	G	2: 120,558,342 (GRCm39)	I490T	probably damaging	Het
Cep170b	T	A	12: 112,702,149 (GRCm39)	V314E	probably damaging	Het
Col4a4	T	C	1: 82,496,757 (GRCm39)	E413G	unknown	Het
Cyp3a25	A	C	5: 145,929,801 (GRCm39)	F189L	probably benign	Het
Dido1	T	A	2: 180,303,002 (GRCm39)	H1634L	probably benign	Het
Dnaja2	A	C	8: 86,275,303 (GRCm39)	V156G	probably benign	Het
Dpy19l4	T	C	4: 11,290,291 (GRCm39)		probably null	Het
Eomes	A	T	9: 118,309,567 (GRCm39)	N240I	possibly damaging	Het
Fads6	A	G	11: 115,176,229 (GRCm39)	F199L	probably benign	Het
Fbrs	T	C	7: 127,086,956 (GRCm39)		probably null	Het
Fndc4	T	C	5: 31,451,522 (GRCm39)	E153G	probably benign	Het
Fv1	TTCTCTCTCTCTCTC	TTCTCTCTCTCTCTCTC	4: 147,954,775 (GRCm39)		probably null	Het
Fzr1	T	C	10: 81,206,057 (GRCm39)	Y210C	probably damaging	Het
Gjc2	T	A	11: 59,067,856 (GRCm39)	M209L	unknown	Het
Gpr33	A	G	12: 52,071,036 (GRCm39)	M1T	probably null	Het
Gtf2a1	A	T	12: 91,553,523 (GRCm39)	I28N	possibly damaging	Het
Igf2r	A	C	17: 12,923,210 (GRCm39)	Y1200D	probably damaging	Het
Ivd	C	T	2: 118,703,730 (GRCm39)	T212I	probably damaging	Het
Jag1	A	G	2: 136,957,409 (GRCm39)	V101A	probably benign	Het
Kansl3	A	T	1: 36,404,701 (GRCm39)	V83D	possibly damaging	Het
Krt81	T	A	15: 101,359,006 (GRCm39)	I249F	probably benign	Het
Krtap21-1	G	A	16: 89,200,591 (GRCm39)	S17L	unknown	Het
Macf1	A	T	4: 123,302,989 (GRCm39)	H504Q	probably benign	Het
Map2	A	G	1: 66,455,983 (GRCm39)	T1499A	probably damaging	Het
Map3k9	T	C	12: 81,770,982 (GRCm39)	T892A	probably damaging	Het
Mcl1	G	A	3: 95,567,110 (GRCm39)	V178I	probably benign	Het
Mrs2	T	A	13: 25,188,937 (GRCm39)	M126L	probably benign	Het
Msantd1	C	A	5: 35,075,005 (GRCm39)	N9K	probably benign	Het
Myh9	C	T	15: 77,659,398 (GRCm39)	R116H	probably damaging	Het
Nfib	A	T	4: 82,248,662 (GRCm39)	D308E	probably benign	Het
Nme2	T	A	11: 93,846,416 (GRCm39)	I11F	probably damaging	Het
Nmnat3	A	G	9: 98,292,286 (GRCm39)	D111G	probably benign	Het
Or5d37	T	A	2: 87,924,045 (GRCm39)	L78F	probably damaging	Het
Papss2	T	C	19: 32,641,827 (GRCm39)	W501R	probably damaging	Het
Parn	A	G	16: 13,443,998 (GRCm39)	I384T	possibly damaging	Het
Pcdhb18	A	G	18: 37,623,864 (GRCm39)	D398G	possibly damaging	Het
Pdcl2	T	C	5: 76,465,771 (GRCm39)	N102D	probably benign	Het
Pdzrn3	C	A	6: 101,128,735 (GRCm39)	E644*	probably null	Het
Pi4ka	T	A	16: 17,134,879 (GRCm39)		probably benign	Het
Polg2	A	G	11: 106,668,040 (GRCm39)	F216L	probably damaging	Het
Prkcsh	A	G	9: 21,924,457 (GRCm39)	*522W	probably null	Het
Prkcz	G	T	4: 155,374,091 (GRCm39)	D108E	probably benign	Het
Pros1	T	C	16: 62,748,465 (GRCm39)	V646A	possibly damaging	Het
Ptprc	A	G	1: 138,017,309 (GRCm39)	I483T	probably damaging	Het
Rabep2	T	C	7: 126,044,485 (GRCm39)	I527T	possibly damaging	Het
Rad50	T	C	11: 53,578,929 (GRCm39)	K543R	probably benign	Het
Samd4b	A	G	7: 28,103,458 (GRCm39)	I553T	probably benign	Het
Sbpl	A	T	17: 24,172,276 (GRCm39)	N214K	unknown	Het
Scgb2b11	C	T	7: 31,909,907 (GRCm39)	E60K	possibly damaging	Het
Sgk3	G	A	1: 9,956,284 (GRCm39)	E331K	probably damaging	Het
Snx6	A	T	12: 54,830,864 (GRCm39)	L32Q	probably damaging	Het
Srgap3	T	A	6: 112,723,924 (GRCm39)	Q512L	probably damaging	Het
Srsf12	A	G	4: 33,226,157 (GRCm39)	D135G	probably damaging	Het
Steap4	A	G	5: 8,026,858 (GRCm39)	T274A	probably damaging	Het
Svep1	A	T	4: 58,064,275 (GRCm39)	V3236D	probably benign	Het
Svep1	A	T	4: 58,120,642 (GRCm39)	F797Y	probably benign	Het
Tmem116	T	C	5: 121,605,987 (GRCm39)	L113P	probably damaging	Het
Tnfrsf1b	A	G	4: 144,951,457 (GRCm39)	V161A	probably damaging	Het
Tnpo1	G	T	13: 98,991,987 (GRCm39)	Q622K	possibly damaging	Het
Top1mt	A	G	15: 75,550,523 (GRCm39)	V28A	probably benign	Het
Trim25	T	C	11: 88,890,750 (GRCm39)	S146P	probably benign	Het
Tuba3b	A	G	6: 145,566,935 (GRCm39)	D392G	possibly damaging	Het
Utrn	C	T	10: 12,623,665 (GRCm39)	R191Q	probably benign	Het
Vmn2r111	T	C	17: 22,778,032 (GRCm39)	N549S	possibly damaging	Het
Wdfy2	T	A	14: 63,137,748 (GRCm39)	S84T	probably benign	Het
Zfp873	T	A	10: 81,895,832 (GRCm39)	F225I	probably damaging	Het

Other mutations in Catsper2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00649:Catsper2	APN	2	121,228,373 (GRCm39)	splice site	probably benign
IGL01830:Catsper2	APN	2	121,237,843 (GRCm39)	missense	probably damaging	1.00
IGL03243:Catsper2	APN	2	121,237,300 (GRCm39)	missense	probably benign	0.08
IGL03247:Catsper2	APN	2	121,240,681 (GRCm39)	missense	probably benign	0.03
IGL03342:Catsper2	APN	2	121,237,217 (GRCm39)	missense	probably damaging	0.99
FR4304:Catsper2	UTSW	2	121,228,263 (GRCm39)	utr 3 prime	probably benign
FR4304:Catsper2	UTSW	2	121,228,023 (GRCm39)	nonsense	probably null
FR4342:Catsper2	UTSW	2	121,228,274 (GRCm39)	utr 3 prime	probably benign
FR4589:Catsper2	UTSW	2	121,228,260 (GRCm39)	utr 3 prime	probably benign
FR4737:Catsper2	UTSW	2	121,228,021 (GRCm39)	utr 3 prime	probably benign
FR4976:Catsper2	UTSW	2	121,228,263 (GRCm39)	utr 3 prime	probably benign
FR4976:Catsper2	UTSW	2	121,228,260 (GRCm39)	utr 3 prime	probably benign
FR4976:Catsper2	UTSW	2	121,228,023 (GRCm39)	utr 3 prime	probably benign
FR4976:Catsper2	UTSW	2	121,228,276 (GRCm39)	utr 3 prime	probably benign
R1463:Catsper2	UTSW	2	121,236,927 (GRCm39)	missense	probably damaging	1.00
R1686:Catsper2	UTSW	2	121,230,523 (GRCm39)	critical splice donor site	probably null
R2006:Catsper2	UTSW	2	121,236,838 (GRCm39)	nonsense	probably null
R2163:Catsper2	UTSW	2	121,230,656 (GRCm39)	missense	probably damaging	1.00
R4543:Catsper2	UTSW	2	121,237,890 (GRCm39)	nonsense	probably null
R4888:Catsper2	UTSW	2	121,227,604 (GRCm39)	splice site	probably null
R5121:Catsper2	UTSW	2	121,227,604 (GRCm39)	splice site	probably null
R5323:Catsper2	UTSW	2	121,237,216 (GRCm39)	missense	probably damaging	1.00
R5518:Catsper2	UTSW	2	121,236,844 (GRCm39)	missense	possibly damaging	0.69
R5605:Catsper2	UTSW	2	121,227,533 (GRCm39)	missense	possibly damaging	0.91
R6521:Catsper2	UTSW	2	121,237,288 (GRCm39)	missense	probably damaging	1.00
R6531:Catsper2	UTSW	2	121,230,261 (GRCm39)	missense	possibly damaging	0.67
R7138:Catsper2	UTSW	2	121,227,544 (GRCm39)	missense	possibly damaging	0.85
R7240:Catsper2	UTSW	2	121,228,053 (GRCm39)	utr 3 prime	probably benign
R7247:Catsper2	UTSW	2	121,228,053 (GRCm39)	utr 3 prime	probably benign
R7686:Catsper2	UTSW	2	121,227,937 (GRCm39)	splice site	probably null
R8385:Catsper2	UTSW	2	121,240,621 (GRCm39)	missense	possibly damaging	0.46
R8426:Catsper2	UTSW	2	121,228,053 (GRCm39)	utr 3 prime	probably benign
R9086:Catsper2	UTSW	2	121,228,053 (GRCm39)	utr 3 prime	probably benign
R9584:Catsper2	UTSW	2	121,230,301 (GRCm39)	missense	probably damaging	0.99
R9616:Catsper2	UTSW	2	121,228,053 (GRCm39)	utr 3 prime	probably benign
R9646:Catsper2	UTSW	2	121,228,053 (GRCm39)	utr 3 prime	probably benign
R9708:Catsper2	UTSW	2	121,237,321 (GRCm39)	missense	possibly damaging	0.46
RF028:Catsper2	UTSW	2	121,228,207 (GRCm39)	utr 3 prime	probably benign
Z1176:Catsper2	UTSW	2	121,237,866 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TGAGTTTTAAAATCATCCTGGGCC -3'
(R):5'- GCGATGCTACTGAAAGCGATG -3'

Sequencing Primer
(F):5'- CAAAACAATGACTGTGGGTCTC -3'
(R):5'- CTACTGAAAGCGATGGCGAG -3'

Posted On

2019-05-13