Mutagenetix > Incidental Mutation

Incidental Mutation 'R0612:Arl6ip4'

54799

Institutional Source

Beutler Lab

Gene Symbol

Arl6ip4

Ensembl Gene

ENSMUSG00000029404

Gene Name

ADP-ribosylation factor-like 6 interacting protein 4

Synonyms

Srp25, Aip-4

MMRRC Submission

038801-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.216) question?

Stock #

R0612 (G1)

Quality Score

213

Status

Validated

Chromosome

Chromosomal Location

124254171-124256258 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 124254596 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Glycine at position 30 (S30G)

Ref Sequence

ENSEMBL: ENSMUSP00000031351 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000024470] [ENSMUST00000031351] [ENSMUST00000086123] [ENSMUST00000119269] [ENSMUST00000122394] [ENSMUST00000149835] [ENSMUST00000196401] [ENSMUST00000161938] [ENSMUST00000196627] [ENSMUST00000162812] [ENSMUST00000198505] [ENSMUST00000145667] [ENSMUST00000161273] [ENSMUST00000198770]

AlphaFold

Q9JM93

Predicted Effect

probably benign
Transcript: ENSMUST00000024470

SMART Domains

Protein: ENSMUSP00000024470
Gene: ENSMUSG00000023707

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
Blast:P4Hc	42	100	2e-6	BLAST
low complexity region	102	112	N/A	INTRINSIC
P4Hc	136	307	7.91e-26	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000031351
AA Change: S30G

PolyPhen 2 Score 0.317 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000031351
Gene: ENSMUSG00000029404
AA Change: S30G

Domain	Start	End	E-Value	Type
Pfam:SR-25	7	227	2.7e-104	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000086123

SMART Domains

Protein: ENSMUSP00000083292
Gene: ENSMUSG00000029406

Domain	Start	End	E-Value	Type
Pfam:IP_trans	1	253	6.1e-132	PFAM
low complexity region	298	319	N/A	INTRINSIC
low complexity region	333	344	N/A	INTRINSIC
low complexity region	507	515	N/A	INTRINSIC
Blast:DDHD	548	570	6e-7	BLAST
low complexity region	571	589	N/A	INTRINSIC
low complexity region	608	630	N/A	INTRINSIC
low complexity region	682	689	N/A	INTRINSIC
DDHD	701	895	1.66e-98	SMART
LNS2	1040	1171	3.22e-55	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000119269

SMART Domains

Protein: ENSMUSP00000112701
Gene: ENSMUSG00000023707

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
Blast:P4Hc	42	133	1e-22	BLAST
Blast:P4Hc	136	175	1e-20	BLAST
low complexity region	176	187	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000122394

SMART Domains

Protein: ENSMUSP00000112506
Gene: ENSMUSG00000029404

Domain	Start	End	E-Value	Type
Pfam:SR-25	2	199	6.3e-85	PFAM

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127989

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000130140

Predicted Effect

unknown
Transcript: ENSMUST00000149835
AA Change: S30G

SMART Domains

Protein: ENSMUSP00000116269
Gene: ENSMUSG00000029404
AA Change: S30G

Domain	Start	End	E-Value	Type
low complexity region	5	32	N/A	INTRINSIC
SCOP:d1l9ha_	58	84	7e-3	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000131094

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000161479

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000148365

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000143062

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000136955

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000159628

Predicted Effect

probably benign
Transcript: ENSMUST00000196401

SMART Domains

Protein: ENSMUSP00000142496
Gene: ENSMUSG00000029404

Domain	Start	End	E-Value	Type
low complexity region	29	50	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000161938

SMART Domains

Protein: ENSMUSP00000124111
Gene: ENSMUSG00000029406

Domain	Start	End	E-Value	Type
Pfam:IP_trans	1	251	7.5e-116	PFAM
low complexity region	298	319	N/A	INTRINSIC
low complexity region	333	344	N/A	INTRINSIC
Blast:DDHD	422	670	2e-65	BLAST
low complexity region	682	689	N/A	INTRINSIC
DDHD	701	949	8.37e-104	SMART
LNS2	1094	1225	3.22e-55	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000196627

SMART Domains

Protein: ENSMUSP00000143698
Gene: ENSMUSG00000023707

Domain	Start	End	E-Value	Type
low complexity region	2	16	N/A	INTRINSIC
Blast:P4Hc	42	133	1e-23	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000162812

SMART Domains

Protein: ENSMUSP00000124740
Gene: ENSMUSG00000029406

Domain	Start	End	E-Value	Type
Pfam:IP_trans	1	253	6.1e-132	PFAM
low complexity region	298	319	N/A	INTRINSIC
low complexity region	333	344	N/A	INTRINSIC
low complexity region	507	515	N/A	INTRINSIC
Blast:DDHD	548	570	6e-7	BLAST
low complexity region	571	589	N/A	INTRINSIC
low complexity region	608	630	N/A	INTRINSIC
low complexity region	682	689	N/A	INTRINSIC
DDHD	701	895	1.66e-98	SMART
LNS2	1040	1171	3.22e-55	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000198505

SMART Domains

Protein: ENSMUSP00000142965
Gene: ENSMUSG00000023707

Domain	Start	End	E-Value	Type
low complexity region	2	11	N/A	INTRINSIC
low complexity region	30	45	N/A	INTRINSIC
low complexity region	48	61	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000145667

SMART Domains

Protein: ENSMUSP00000122377
Gene: ENSMUSG00000029404

Domain	Start	End	E-Value	Type
Pfam:SR-25	19	227	3e-86	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000161273

SMART Domains

Protein: ENSMUSP00000124292
Gene: ENSMUSG00000029406

Domain	Start	End	E-Value	Type
Pfam:IP_trans	1	253	3.2e-129	PFAM
low complexity region	298	319	N/A	INTRINSIC
low complexity region	333	344	N/A	INTRINSIC
Blast:DDHD	422	670	2e-65	BLAST
low complexity region	682	689	N/A	INTRINSIC
DDHD	701	945	7.5e-100	SMART
LNS2	1090	1221	3.1e-59	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000198770

SMART Domains

Protein: ENSMUSP00000143318
Gene: ENSMUSG00000023707

Domain	Start	End	E-Value	Type
Blast:P4Hc	11	102	7e-24	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000199457

Meta Mutation Damage Score

0.0852

Coding Region Coverage

1x: 99.6%
3x: 99.0%
10x: 97.2%
20x: 93.5%

Validation Efficiency

98% (92/94)

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca15	T	C	7: 119,936,478 (GRCm39)	L181P	probably damaging	Het
Aldh3a1	A	T	11: 61,105,445 (GRCm39)	I184F	probably damaging	Het
Atp9b	T	C	18: 80,797,171 (GRCm39)	E891G	possibly damaging	Het
Brsk1	T	C	7: 4,710,425 (GRCm39)	L478P	possibly damaging	Het
Btaf1	G	A	19: 36,946,537 (GRCm39)	V448I	probably damaging	Het
Cab39	T	C	1: 85,746,236 (GRCm39)		probably null	Het
Cacna2d4	G	T	6: 119,258,679 (GRCm39)		probably benign	Het
Capzb	C	T	4: 139,018,340 (GRCm39)	S253L	probably benign	Het
Ccdc174	A	G	6: 91,867,873 (GRCm39)		probably benign	Het
Ccdc180	C	T	4: 45,927,969 (GRCm39)	A1168V	probably damaging	Het
Cdh19	T	C	1: 110,820,900 (GRCm39)		probably benign	Het
Cdh8	T	C	8: 100,127,546 (GRCm39)	T22A	probably benign	Het
Cdk10	T	C	8: 123,957,419 (GRCm39)	V181A	probably benign	Het
Ceacam15	A	C	7: 16,407,445 (GRCm39)	L24*	probably null	Het
Cftr	A	C	6: 18,198,125 (GRCm39)	T20P	probably benign	Het
Cip2a	C	T	16: 48,819,402 (GRCm39)	A112V	probably benign	Het
Clstn3	T	C	6: 124,426,459 (GRCm39)	T576A	probably damaging	Het
Col1a2	G	A	6: 4,516,003 (GRCm39)	V165I	unknown	Het
Copg2	A	T	6: 30,838,404 (GRCm39)		probably null	Het
Cps1	A	G	1: 67,178,929 (GRCm39)	H47R	probably benign	Het
Cytip	T	C	2: 58,024,202 (GRCm39)	D206G	possibly damaging	Het
Dcaf8l	G	A	X: 88,448,972 (GRCm39)	R386*	probably null	Het
Dnmt1	C	T	9: 20,829,489 (GRCm39)	E824K	probably damaging	Het
Dock7	A	C	4: 98,877,470 (GRCm39)	V442G	probably benign	Het
Dsc1	T	G	18: 20,247,573 (GRCm39)	K14T	probably damaging	Het
Dync1h1	C	T	12: 110,582,930 (GRCm39)	P371L	probably damaging	Het
Enah	A	G	1: 181,734,013 (GRCm39)		probably benign	Het
Entrep2	C	T	7: 64,411,549 (GRCm39)	V395M	probably benign	Het
Fastkd1	T	C	2: 69,542,727 (GRCm39)	T27A	probably benign	Het
Fcho1	A	G	8: 72,168,168 (GRCm39)	L248P	probably damaging	Het
Fezf1	A	T	6: 23,247,028 (GRCm39)	V268D	probably damaging	Het
Fgd2	T	A	17: 29,597,321 (GRCm39)	V547E	probably benign	Het
Flnb	T	A	14: 7,887,682 (GRCm38)		probably benign	Het
Gabrg3	A	G	7: 56,379,454 (GRCm39)	M316T	probably damaging	Het
Gigyf2	T	C	1: 87,376,802 (GRCm39)	F1265L	probably damaging	Het
Git2	A	G	5: 114,890,342 (GRCm39)	S271P	probably damaging	Het
Gorab	T	C	1: 163,224,738 (GRCm39)	D21G	possibly damaging	Het
Gpr179	T	A	11: 97,229,264 (GRCm39)	T964S	possibly damaging	Het
Hdac5	A	G	11: 102,087,078 (GRCm39)	V1042A	possibly damaging	Het
Hoxa2	T	A	6: 52,140,540 (GRCm39)	T149S	probably damaging	Het
Igsf8	G	T	1: 172,146,974 (GRCm39)	*108L	probably null	Het
Il1rap	C	T	16: 26,519,855 (GRCm39)	T307M	possibly damaging	Het
Itih2	T	C	2: 10,122,205 (GRCm39)	D232G	probably benign	Het
Jak3	A	G	8: 72,136,021 (GRCm39)	Y607C	probably damaging	Het
Kcnh1	C	T	1: 191,959,361 (GRCm39)	P305L	probably damaging	Het
Lrrc7	T	A	3: 157,869,990 (GRCm39)	I644F	probably damaging	Het
Lrrn2	T	C	1: 132,865,466 (GRCm39)	L177P	probably damaging	Het
Lypd8l	A	G	11: 58,502,799 (GRCm39)		probably null	Het
Map4k3	C	A	17: 80,909,622 (GRCm39)	K712N	probably damaging	Het
Med11	A	G	11: 70,342,910 (GRCm39)	T36A	probably benign	Het
Mmp14	A	G	14: 54,677,891 (GRCm39)	D504G	probably damaging	Het
Mob1a	A	G	6: 83,311,140 (GRCm39)	T120A	probably benign	Het
Mr1	T	A	1: 155,013,436 (GRCm39)	D47V	probably damaging	Het
Nacad	G	T	11: 6,551,382 (GRCm39)	A603E	possibly damaging	Het
Nwd1	T	A	8: 73,394,308 (GRCm39)	W524R	probably damaging	Het
Or11g26	A	T	14: 50,752,939 (GRCm39)	T93S	probably benign	Het
Or13a19	T	A	7: 139,903,101 (GRCm39)	M163K	possibly damaging	Het
Or4e1	T	C	14: 52,701,008 (GRCm39)	T153A	probably benign	Het
Parp14	G	A	16: 35,677,130 (GRCm39)	A946V	probably benign	Het
Pde6c	T	A	19: 38,121,694 (GRCm39)	C101S	probably benign	Het
Pdia3	G	A	2: 121,262,858 (GRCm39)	G275S	probably damaging	Het
Pdlim4	G	A	11: 53,959,713 (GRCm39)	R16C	probably damaging	Het
Pfkp	A	G	13: 6,655,670 (GRCm39)		probably null	Het
Plcg2	T	A	8: 118,300,104 (GRCm39)	S225T	probably benign	Het
Pramel1	T	C	4: 143,124,101 (GRCm39)	S259P	probably damaging	Het
Pramel27	G	T	4: 143,578,658 (GRCm39)		probably benign	Het
Rc3h2	T	C	2: 37,301,227 (GRCm39)	N92D	possibly damaging	Het
Ric8b	C	A	10: 84,837,745 (GRCm39)	N517K	probably damaging	Het
Rnf34	G	A	5: 123,002,237 (GRCm39)	R65H	probably damaging	Het
Rraga	C	T	4: 86,494,564 (GRCm39)	R137C	probably damaging	Het
Scube2	C	T	7: 109,403,971 (GRCm39)		probably benign	Het
Slc28a2b	T	C	2: 122,352,179 (GRCm39)	M339T	probably damaging	Het
Spata31d1d	T	C	13: 59,875,787 (GRCm39)	I583V	probably benign	Het
Suox	T	C	10: 128,506,525 (GRCm39)	E501G	probably benign	Het
Susd1	A	G	4: 59,390,561 (GRCm39)		probably benign	Het
Tac1	T	C	6: 7,555,653 (GRCm39)	S14P	probably damaging	Het
Tbc1d8	T	C	1: 39,411,596 (GRCm39)	E1080G	possibly damaging	Het
Tll1	A	C	8: 64,524,344 (GRCm39)	S447R	possibly damaging	Het
Tmem132e	G	A	11: 82,334,198 (GRCm39)	V662M	probably damaging	Het
Upf2	G	T	2: 6,038,909 (GRCm39)		probably benign	Het
Uspl1	A	G	5: 149,151,767 (GRCm39)	E989G	probably damaging	Het
Vmn1r58	T	C	7: 5,413,618 (GRCm39)	H204R	probably damaging	Het
Vmn2r25	A	T	6: 123,816,481 (GRCm39)	C367S	probably damaging	Het
Vps13b	A	T	15: 35,623,803 (GRCm39)	Q1240L	probably benign	Het
Xrcc1	C	T	7: 24,269,744 (GRCm39)		probably benign	Het
Yeats2	T	G	16: 20,005,175 (GRCm39)	V385G	probably benign	Het

Other mutations in Arl6ip4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03079:Arl6ip4	APN	5	124,254,990 (GRCm39)	missense	possibly damaging	0.93
R2436:Arl6ip4	UTSW	5	124,254,662 (GRCm39)	missense	probably benign	0.19
R6030:Arl6ip4	UTSW	5	124,255,968 (GRCm39)	critical splice donor site	probably null
R6030:Arl6ip4	UTSW	5	124,255,968 (GRCm39)	critical splice donor site	probably null
R6762:Arl6ip4	UTSW	5	124,255,113 (GRCm39)	unclassified	probably benign
R6789:Arl6ip4	UTSW	5	124,254,665 (GRCm39)	missense	probably damaging	1.00
R6906:Arl6ip4	UTSW	5	124,254,614 (GRCm39)	missense	possibly damaging	0.45
R8190:Arl6ip4	UTSW	5	124,255,095 (GRCm39)	missense	probably damaging	0.98
R8713:Arl6ip4	UTSW	5	124,254,825 (GRCm39)	missense	unknown
R8777:Arl6ip4	UTSW	5	124,254,611 (GRCm39)	missense	probably benign	0.02
R8777-TAIL:Arl6ip4	UTSW	5	124,254,611 (GRCm39)	missense	probably benign	0.02
R9261:Arl6ip4	UTSW	5	124,256,146 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- AGGACACGCTCACGAAGAGTCG -3'
(R):5'- GGCTCTCCAAGAGAACATCTGGAAC -3'

Sequencing Primer
(F):5'- TCACGAAGAGTCGCAGGC -3'
(R):5'- AAGTCACTATGTGCCTGGCAG -3'

Posted On

2013-07-11