Mutagenetix > Incidental Mutation

Incidental Mutation 'R7080:Fam170a'

549490

Institutional Source

Beutler Lab

Gene Symbol

Fam170a

Ensembl Gene

ENSMUSG00000035420

Gene Name

family with sequence similarity 170, member A

Synonyms

LOC225497, Znfd

MMRRC Submission

045174-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7080 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

50411436-50416087 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to A at 50413740 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000035910 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000039121]

AlphaFold

Q66LM6

Predicted Effect

probably null
Transcript: ENSMUST00000039121

SMART Domains

Protein: ENSMUSP00000035910
Gene: ENSMUSG00000035420

Domain	Start	End	E-Value	Type
low complexity region	92	105	N/A	INTRINSIC
low complexity region	181	200	N/A	INTRINSIC
ZnF_C2H2	224	244	2.35e1	SMART
low complexity region	268	300	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

94% (47/50)

Allele List at MGI

Other mutations in this stock

Total: 48 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca2	A	G	2: 25,336,116 (GRCm39)	E2162G	probably benign	Het
Ackr4	A	G	9: 103,976,761 (GRCm39)	V62A	probably damaging	Het
Atox1	T	A	11: 55,341,365 (GRCm39)	K57*	probably null	Het
Atp6v1e1	G	A	6: 120,799,350 (GRCm39)		probably benign	Het
Bmpr2	T	C	1: 59,906,842 (GRCm39)	V645A	probably benign	Het
Brwd1	T	C	16: 95,810,730 (GRCm39)	T1602A	probably benign	Het
Cdc42bpg	T	C	19: 6,365,219 (GRCm39)	V692A	probably damaging	Het
Cdca2	T	C	14: 67,935,551 (GRCm39)	D388G	probably damaging	Het
Celsr1	G	A	15: 85,816,652 (GRCm39)	R1764C	possibly damaging	Het
Copz2	G	T	11: 96,747,538 (GRCm39)	V174L	probably benign	Het
Dnaaf1	T	C	8: 120,309,335 (GRCm39)	L141P	probably damaging	Het
Fshr	A	T	17: 89,404,539 (GRCm39)		probably null	Het
Gbx1	C	T	5: 24,731,298 (GRCm39)	A173T	probably benign	Het
Gm3604	G	A	13: 62,518,109 (GRCm39)	A83V	probably damaging	Het
Gpr19	A	T	6: 134,847,419 (GRCm39)	V88D	probably damaging	Het
Hnrnpd	C	T	5: 100,124,392 (GRCm39)		probably null	Het
Homez	T	C	14: 55,095,112 (GRCm39)	S199G	probably benign	Het
Kit	T	C	5: 75,767,941 (GRCm39)	I108T	probably damaging	Het
Lrrc34	A	C	3: 30,688,705 (GRCm39)	Y199D	probably damaging	Het
Mapk12	T	C	15: 89,017,350 (GRCm39)	D208G	probably damaging	Het
Mon1a	A	G	9: 107,778,985 (GRCm39)	D403G	probably damaging	Het
Myo1d	C	T	11: 80,565,460 (GRCm39)	E426K	probably damaging	Het
Nol11	G	A	11: 107,070,878 (GRCm39)	T307I	probably damaging	Het
Or10d5	A	G	9: 39,861,444 (GRCm39)	C208R	probably damaging	Het
Or52b4	A	T	7: 102,184,172 (GRCm39)	I73F	possibly damaging	Het
Or5aq1b	A	G	2: 86,902,083 (GRCm39)	Y132H	probably damaging	Het
Or6d15	A	T	6: 116,559,314 (GRCm39)	F198I	probably damaging	Het
Or8k28	A	T	2: 86,285,835 (GRCm39)	L260*	probably null	Het
Pcdhb16	C	T	18: 37,611,516 (GRCm39)	Q159*	probably null	Het
Phf19	G	A	2: 34,788,724 (GRCm39)		probably null	Het
Qrfpr	C	T	3: 36,234,198 (GRCm39)	R381H	probably benign	Het
Rad51ap2	A	G	12: 11,506,366 (GRCm39)	D96G	probably benign	Het
Ranbp1	T	C	16: 18,063,097 (GRCm39)	D93G	possibly damaging	Het
Reep1	A	G	6: 71,757,749 (GRCm39)	D116G	possibly damaging	Het
Rinl	T	C	7: 28,496,101 (GRCm39)	C361R	probably damaging	Het
Rps6kb1	T	C	11: 86,397,666 (GRCm39)	D393G	probably damaging	Het
Slc2a12	T	C	10: 22,541,216 (GRCm39)	V357A	probably benign	Het
Spryd3	T	C	15: 102,026,627 (GRCm39)	D348G	probably benign	Het
Syne2	G	A	12: 76,099,501 (GRCm39)	A569T	probably benign	Het
Tcstv5	T	C	13: 120,411,270 (GRCm39)	D112G	probably benign	Het
Thoc6	C	T	17: 23,892,503 (GRCm39)	R6Q	probably null	Het
Tyw3	G	C	3: 154,299,426 (GRCm39)	S94R	probably benign	Het
Unc13b	C	T	4: 43,171,926 (GRCm39)	T918I	unknown	Het
Unc80	A	T	1: 66,685,680 (GRCm39)	H2268L	possibly damaging	Het
Urod	C	T	4: 116,849,838 (GRCm39)	A187T	probably damaging	Het
Usp46	G	T	5: 74,177,344 (GRCm39)	N205K	probably benign	Het
Wapl	T	C	14: 34,414,313 (GRCm39)	F392L	probably benign	Het
Zim1	T	C	7: 6,680,305 (GRCm39)	T453A	possibly damaging	Het

Other mutations in Fam170a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01351:Fam170a	APN	18	50,414,845 (GRCm39)	missense	probably benign	0.00
IGL01637:Fam170a	APN	18	50,414,734 (GRCm39)	missense	possibly damaging	0.88
IGL01681:Fam170a	APN	18	50,415,302 (GRCm39)	missense	possibly damaging	0.55
IGL03151:Fam170a	APN	18	50,414,708 (GRCm39)	missense	probably damaging	1.00
IGL03263:Fam170a	APN	18	50,413,588 (GRCm39)	splice site	probably benign
R0446:Fam170a	UTSW	18	50,413,699 (GRCm39)	missense	possibly damaging	0.92
R1029:Fam170a	UTSW	18	50,414,741 (GRCm39)	missense	probably damaging	1.00
R1242:Fam170a	UTSW	18	50,415,206 (GRCm39)	missense	probably damaging	0.96
R1958:Fam170a	UTSW	18	50,415,181 (GRCm39)	missense	probably benign	0.04
R2325:Fam170a	UTSW	18	50,414,917 (GRCm39)	missense	possibly damaging	0.56
R3722:Fam170a	UTSW	18	50,415,271 (GRCm39)	missense	probably benign	0.16
R4012:Fam170a	UTSW	18	50,415,038 (GRCm39)	missense	probably damaging	1.00
R4240:Fam170a	UTSW	18	50,414,734 (GRCm39)	missense	possibly damaging	0.88
R4835:Fam170a	UTSW	18	50,415,050 (GRCm39)	missense	probably damaging	0.98
R5030:Fam170a	UTSW	18	50,415,021 (GRCm39)	missense	probably benign	0.00
R5201:Fam170a	UTSW	18	50,415,193 (GRCm39)	missense	probably benign	0.00
R5401:Fam170a	UTSW	18	50,413,618 (GRCm39)	missense	probably benign	0.20
R5907:Fam170a	UTSW	18	50,415,321 (GRCm39)	critical splice donor site	probably null
R6207:Fam170a	UTSW	18	50,415,017 (GRCm39)	missense	probably damaging	0.99
R7232:Fam170a	UTSW	18	50,414,728 (GRCm39)	missense	probably damaging	1.00
R7622:Fam170a	UTSW	18	50,415,969 (GRCm39)	missense	probably benign	0.20
R8359:Fam170a	UTSW	18	50,414,677 (GRCm39)	missense	probably damaging	1.00
Z1176:Fam170a	UTSW	18	50,414,651 (GRCm39)	missense	possibly damaging	0.60

Predicted Primers

PCR Primer
(F):5'- ACCAAACACCGTATCTTTGTGC -3'
(R):5'- AAGATCCCGATCCATTACTTCC -3'

Sequencing Primer
(F):5'- AAACACCGTATCTTTGTGCCTTTC -3'
(R):5'- CCAATAGCCCTGAATTTCATCTAGG -3'

Posted On

2019-05-15