Mutagenetix > Incidental Mutation

Incidental Mutation 'R7097:Ptpn14'

550535

Institutional Source

Beutler Lab

Gene Symbol

Ptpn14

Ensembl Gene

ENSMUSG00000026604

Gene Name

protein tyrosine phosphatase, non-receptor type 14

Synonyms

C130080N23Rik, OTTMUSG00000022087, PTP36

MMRRC Submission

045189-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7097 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

189460465-189608892 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 189595595 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Stop codon at position 739 (W739*)

Ref Sequence

ENSEMBL: ENSMUSP00000027898 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000027898] [ENSMUST00000097442]

AlphaFold

Q62130

Predicted Effect

probably null
Transcript: ENSMUST00000027898
AA Change: W739*

SMART Domains

Protein: ENSMUSP00000027898
Gene: ENSMUSG00000026604
AA Change: W739*

Domain	Start	End	E-Value	Type
B41	17	220	3.7e-67	SMART
FERM_C	224	310	3.43e-15	SMART
low complexity region	565	575	N/A	INTRINSIC
low complexity region	633	639	N/A	INTRINSIC
low complexity region	710	718	N/A	INTRINSIC
low complexity region	745	758	N/A	INTRINSIC
low complexity region	817	834	N/A	INTRINSIC
PTPc	910	1184	2.14e-103	SMART

Predicted Effect

probably null
Transcript: ENSMUST00000097442
AA Change: W1079*

SMART Domains

Protein: ENSMUSP00000095051
Gene: ENSMUSG00000026604
AA Change: W1079*

Domain	Start	End	E-Value	Type
B41	17	220	3.7e-67	SMART
FERM_C	224	310	3.43e-15	SMART
low complexity region	565	575	N/A	INTRINSIC
low complexity region	633	639	N/A	INTRINSIC
low complexity region	710	718	N/A	INTRINSIC
low complexity region	745	758	N/A	INTRINSIC
low complexity region	817	834	N/A	INTRINSIC
PTPc	910	1184	2.14e-103	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

99% (75/76)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the protein tyrosine phosphatase (PTP) family. PTPs are known to be signaling molecules that regulate a variety of cellular processes including cell growth, differentiation, mitotic cycle, and oncogenic transformation. This PTP contains an N-terminal noncatalytic domain similar to that of band 4.1 superfamily cytoskeleton-associated proteins, which suggested the membrane or cytoskeleton localization of this protein. It appears to regulate lymphatic development in mammals, and a loss of function mutation has been found in a kindred with a lymphedema-choanal atresia. [provided by RefSeq, Sep 2010]
PHENOTYPE: Mice homozygous for a gene trap allele exhibit some postnatal growth retardation, decreased body weight, periorbital and limb edema, and lymphatic vessel hyperplasia. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700010I14Rik	A	G	17: 9,224,052 (GRCm39)	N435S	probably damaging	Het
Aip	A	T	19: 4,165,381 (GRCm39)	V195E	probably benign	Het
Amer3	A	T	1: 34,627,869 (GRCm39)	I703F	probably benign	Het
Amfr	T	C	8: 94,738,637 (GRCm39)	E7G	probably benign	Het
Angel1	A	G	12: 86,773,158 (GRCm39)	S4P	probably damaging	Het
Atp2c1	A	G	9: 105,341,850 (GRCm39)	I146T	probably damaging	Het
Atp6v0e	A	G	17: 26,914,390 (GRCm39)	T72A	probably benign	Het
Bahcc1	T	C	11: 120,163,472 (GRCm39)	V590A	possibly damaging	Het
Bcl6	A	G	16: 23,791,364 (GRCm39)	V330A	possibly damaging	Het
Bcl6	T	C	16: 23,791,652 (GRCm39)	D234G	probably damaging	Het
Btaf1	C	T	19: 36,926,502 (GRCm39)	T58I	probably damaging	Het
Ccdc175	A	T	12: 72,175,183 (GRCm39)		probably null	Het
Cdca4	C	A	12: 112,785,189 (GRCm39)	V180L	probably benign	Het
Ces1g	C	A	8: 94,043,665 (GRCm39)	G425C	possibly damaging	Het
Chl1	T	C	6: 103,683,409 (GRCm39)	L745P	probably damaging	Het
Clec4g	T	A	8: 3,769,518 (GRCm39)	T42S	possibly damaging	Het
Ctsg	A	C	14: 56,337,489 (GRCm39)	I238S	probably damaging	Het
Cyb5rl	A	T	4: 106,944,513 (GRCm39)	E41V	unknown	Het
Dcdc2a	A	G	13: 25,291,681 (GRCm39)	E222G	probably benign	Het
Dnaaf1	G	T	8: 120,323,538 (GRCm39)	G509V	possibly damaging	Het
Dnah5	A	G	15: 28,453,410 (GRCm39)	I4394V	probably benign	Het
Dot1l	T	G	10: 80,626,560 (GRCm39)	S1260R	probably damaging	Het
Dst	T	G	1: 34,208,341 (GRCm39)	I1089S	probably damaging	Het
Efcab3	A	T	11: 104,899,787 (GRCm39)	I4350F	possibly damaging	Het
Eps8l3	A	G	3: 107,791,801 (GRCm39)		probably null	Het
Fam135b	A	G	15: 71,493,917 (GRCm39)	V4A	possibly damaging	Het
Fnip2	T	C	3: 79,388,313 (GRCm39)	E806G	probably benign	Het
Fryl	T	A	5: 73,231,251 (GRCm39)	I1609F	probably benign	Het
Gdi1	G	A	X: 73,350,461 (GRCm39)	R55H	probably benign	Het
Gsn	A	T	2: 35,185,061 (GRCm39)	K339*	probably null	Het
Hecw2	T	A	1: 53,904,283 (GRCm39)	Y1155F	possibly damaging	Het
Kif20b	T	A	19: 34,951,892 (GRCm39)	N1723K	probably damaging	Het
Kif2b	T	C	11: 91,467,650 (GRCm39)	D211G	probably benign	Het
Lhfpl4	C	T	6: 113,153,632 (GRCm39)	V140I	probably benign	Het
Med16	C	T	10: 79,739,177 (GRCm39)	G203D	probably damaging	Het
Mrgpra3	T	A	7: 47,239,389 (GRCm39)	Y179F	probably benign	Het
Muc6	AGGCGCAGAAACCCTGGC	AGGC	7: 141,214,363 (GRCm39)		probably null	Het
Myo18b	A	G	5: 113,022,271 (GRCm39)	S374P	unknown	Het
Myoz1	A	G	14: 20,699,477 (GRCm39)	I287T	possibly damaging	Het
Ncoa6	T	C	2: 155,279,983 (GRCm39)	D11G	probably benign	Het
Nlrp9c	A	G	7: 26,085,046 (GRCm39)	Y178H	probably damaging	Het
Nmur1	T	C	1: 86,315,230 (GRCm39)	T212A	probably damaging	Het
Oacyl	A	G	18: 65,853,323 (GRCm39)	D143G	probably benign	Het
Obox5	A	G	7: 15,492,732 (GRCm39)	Y229C	probably damaging	Het
Or10d1c	A	T	9: 38,893,914 (GRCm39)	M142K	probably benign	Het
Or1j12	A	G	2: 36,342,702 (GRCm39)	Y35C	probably damaging	Het
Or1j18	G	T	2: 36,624,436 (GRCm39)	M34I	probably benign	Het
Or1x2	C	A	11: 50,918,428 (GRCm39)	L200I	probably benign	Het
Or8c13	A	T	9: 38,091,632 (GRCm39)	C162*	probably null	Het
Pcdhb17	A	C	18: 37,619,566 (GRCm39)	N452T	probably benign	Het
Pear1	T	G	3: 87,658,752 (GRCm39)	H901P	probably benign	Het
Peds1	C	G	2: 167,503,398 (GRCm39)	A7P	probably benign	Het
Pi16	A	G	17: 29,545,313 (GRCm39)	Y192C	probably damaging	Het
Pip5k1b	T	G	19: 24,335,424 (GRCm39)	E362D	probably damaging	Het
Pla2g5	T	C	4: 138,531,830 (GRCm39)	D58G	probably damaging	Het
Pole	T	A	5: 110,472,968 (GRCm39)		probably null	Het
Prdm16	G	T	4: 154,429,925 (GRCm39)	T348K	probably damaging	Het
Prkdc	T	A	16: 15,507,207 (GRCm39)	F896I	probably damaging	Het
Prmt7	T	C	8: 106,961,732 (GRCm39)	F215S	unknown	Het
Prss23	T	A	7: 89,159,392 (GRCm39)	T226S	probably damaging	Het
Rfx5	G	T	3: 94,863,850 (GRCm39)	G135C	probably damaging	Het
Scmh1	A	G	4: 120,382,252 (GRCm39)	H573R	probably benign	Het
Serpina5	G	T	12: 104,068,554 (GRCm39)		probably null	Het
Sh3rf2	G	A	18: 42,237,227 (GRCm39)		probably null	Het
Slc38a2	T	C	15: 96,591,182 (GRCm39)	M229V	probably damaging	Het
Slc6a17	C	G	3: 107,400,464 (GRCm39)	G222R	probably damaging	Het
Sp110	C	T	1: 85,507,406 (GRCm39)	G367D	possibly damaging	Het
Srcap	C	A	7: 127,138,213 (GRCm39)	L1128M	probably damaging	Het
Tpra1	T	A	6: 88,885,276 (GRCm39)	I76N	probably damaging	Het
Trav6-4	A	T	14: 53,692,049 (GRCm39)	Y52F	probably benign	Het
Trp63	C	A	16: 25,639,227 (GRCm39)	H138Q	probably damaging	Het
Trub2	A	G	2: 29,669,838 (GRCm39)	V177A	possibly damaging	Het
Ugt2a2	T	C	5: 87,608,255 (GRCm39)	D528G	possibly damaging	Het
Wnk2	C	A	13: 49,256,314 (GRCm39)	R269L	possibly damaging	Het
Zc3h12c	T	A	9: 52,027,226 (GRCm39)	Q731L	possibly damaging	Het

Other mutations in Ptpn14

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01014:Ptpn14	APN	1	189,554,830 (GRCm39)	missense	probably damaging	1.00
IGL02501:Ptpn14	APN	1	189,582,587 (GRCm39)	missense	probably benign	0.14
IGL03011:Ptpn14	APN	1	189,571,754 (GRCm39)	missense	probably damaging	1.00
jelly	UTSW	1	189,554,872 (GRCm39)	nonsense	probably null
Rubens	UTSW	1	189,564,997 (GRCm39)	critical splice donor site	probably null
R0724:Ptpn14	UTSW	1	189,583,144 (GRCm39)	missense	possibly damaging	0.52
R0791:Ptpn14	UTSW	1	189,568,637 (GRCm39)	splice site	probably benign
R1363:Ptpn14	UTSW	1	189,530,825 (GRCm39)	missense	probably damaging	1.00
R1605:Ptpn14	UTSW	1	189,597,709 (GRCm39)	missense	probably benign	0.00
R1840:Ptpn14	UTSW	1	189,519,048 (GRCm39)	missense	probably damaging	1.00
R1845:Ptpn14	UTSW	1	189,571,699 (GRCm39)	missense	possibly damaging	0.96
R1891:Ptpn14	UTSW	1	189,530,850 (GRCm39)	missense	probably damaging	1.00
R2187:Ptpn14	UTSW	1	189,595,425 (GRCm39)	nonsense	probably null
R2288:Ptpn14	UTSW	1	189,597,695 (GRCm39)	missense	probably damaging	1.00
R3686:Ptpn14	UTSW	1	189,583,596 (GRCm39)	missense	probably damaging	1.00
R3895:Ptpn14	UTSW	1	189,582,743 (GRCm39)	missense	probably benign	0.31
R3898:Ptpn14	UTSW	1	189,582,728 (GRCm39)	missense	probably benign	0.35
R4004:Ptpn14	UTSW	1	189,582,707 (GRCm39)	missense	probably benign	0.00
R4816:Ptpn14	UTSW	1	189,588,997 (GRCm39)	missense	probably damaging	1.00
R4883:Ptpn14	UTSW	1	189,582,997 (GRCm39)	missense	probably damaging	0.99
R4928:Ptpn14	UTSW	1	189,554,839 (GRCm39)	missense	probably damaging	1.00
R4931:Ptpn14	UTSW	1	189,583,474 (GRCm39)	missense	probably benign
R4957:Ptpn14	UTSW	1	189,583,469 (GRCm39)	missense	probably benign	0.02
R5009:Ptpn14	UTSW	1	189,582,731 (GRCm39)	missense	probably benign
R5038:Ptpn14	UTSW	1	189,519,083 (GRCm39)	missense	probably damaging	1.00
R5264:Ptpn14	UTSW	1	189,564,997 (GRCm39)	critical splice donor site	probably null
R5373:Ptpn14	UTSW	1	189,583,160 (GRCm39)	missense	probably benign
R5441:Ptpn14	UTSW	1	189,530,767 (GRCm39)	missense	probably damaging	1.00
R5540:Ptpn14	UTSW	1	189,578,561 (GRCm39)	missense	probably benign	0.05
R5638:Ptpn14	UTSW	1	189,519,038 (GRCm39)	missense	probably damaging	1.00
R5746:Ptpn14	UTSW	1	189,578,610 (GRCm39)	critical splice donor site	probably null
R5872:Ptpn14	UTSW	1	189,583,229 (GRCm39)	missense	probably benign	0.00
R5988:Ptpn14	UTSW	1	189,582,584 (GRCm39)	missense	probably damaging	1.00
R6139:Ptpn14	UTSW	1	189,583,362 (GRCm39)	missense	probably benign	0.01
R6295:Ptpn14	UTSW	1	189,582,997 (GRCm39)	missense	probably damaging	0.99
R6770:Ptpn14	UTSW	1	189,564,970 (GRCm39)	missense	probably damaging	1.00
R7320:Ptpn14	UTSW	1	189,564,956 (GRCm39)	missense	probably benign	0.11
R7324:Ptpn14	UTSW	1	189,595,621 (GRCm39)	missense	possibly damaging	0.46
R7599:Ptpn14	UTSW	1	189,582,942 (GRCm39)	missense	probably benign	0.39
R7699:Ptpn14	UTSW	1	189,597,608 (GRCm39)	missense	probably benign	0.08
R7700:Ptpn14	UTSW	1	189,597,608 (GRCm39)	missense	probably benign	0.08
R8379:Ptpn14	UTSW	1	189,565,598 (GRCm39)	missense	possibly damaging	0.95
R8889:Ptpn14	UTSW	1	189,554,872 (GRCm39)	nonsense	probably null
R9659:Ptpn14	UTSW	1	189,587,174 (GRCm39)	missense	probably benign	0.00
R9719:Ptpn14	UTSW	1	189,583,484 (GRCm39)	missense	probably benign	0.00
Z1177:Ptpn14	UTSW	1	189,592,667 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TCGATACTGGCCCAAACTG -3'
(R):5'- ATCACACTCTTGCAGACGTG -3'

Sequencing Primer
(F):5'- ACTGGGGTCCAAGCATAGTTC -3'
(R):5'- GAGCAAGAGACACTTATTACTCTTCC -3'

Posted On

2019-05-15