Mutagenetix > Incidental Mutation

Incidental Mutation 'R7097:Amfr'

550564

Institutional Source

Beutler Lab

Gene Symbol

Amfr

Ensembl Gene

ENSMUSG00000031751

Gene Name

autocrine motility factor receptor

Synonyms

gp78

MMRRC Submission

045189-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7097 (G1)

Quality Score

173.009

Status

Validated

Chromosome

Chromosomal Location

94698216-94739301 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 94738637 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 7 (E7G)

Ref Sequence

ENSEMBL: ENSMUSP00000134924 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034204] [ENSMUST00000053766] [ENSMUST00000143265]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000034204

SMART Domains

Protein: ENSMUSP00000034204
Gene: ENSMUSG00000031754

Domain	Start	End	E-Value	Type
Pfam:NUDIX_2	35	222	9.9e-85	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000053766

SMART Domains

Protein: ENSMUSP00000052258
Gene: ENSMUSG00000031751

Domain	Start	End	E-Value	Type
transmembrane domain	78	97	N/A	INTRINSIC
transmembrane domain	118	137	N/A	INTRINSIC
transmembrane domain	141	158	N/A	INTRINSIC
transmembrane domain	183	205	N/A	INTRINSIC
transmembrane domain	276	298	N/A	INTRINSIC
RING	337	374	1.14e-8	SMART
CUE	452	493	3.3e-11	SMART
PDB:4LAD\|B	571	596	2e-7	PDB
low complexity region	620	637	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000143265
AA Change: E7G

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)

SMART Domains

Protein: ENSMUSP00000134924
Gene: ENSMUSG00000031751
AA Change: E7G

Domain	Start	End	E-Value	Type
transmembrane domain	7	29	N/A	INTRINSIC
transmembrane domain	44	61	N/A	INTRINSIC
transmembrane domain	68	87	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

99% (75/76)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This locus encodes a glycosylated transmembrane receptor. Its ligand, autocrine motility factor, is a tumor motility-stimulating protein secreted by tumor cells. The encoded receptor is also a member of the E3 ubiquitin ligase family of proteins. It catalyzes ubiquitination and endoplasmic reticulum-associated degradation of specific proteins. [provided by RefSeq, Feb 2012]
PHENOTYPE: Mice for a gene-trapped null allele are obese and develop liver steatosis and/or hepatic inflammation resembling nonalcoholic steatohepatitis. Some mice develop liver tumors. Mice homozygous for another knock-out allele exhibit normal HMGCR turnover in mouse embryonic fibroblasts. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700010I14Rik	A	G	17: 9,224,052 (GRCm39)	N435S	probably damaging	Het
Aip	A	T	19: 4,165,381 (GRCm39)	V195E	probably benign	Het
Amer3	A	T	1: 34,627,869 (GRCm39)	I703F	probably benign	Het
Angel1	A	G	12: 86,773,158 (GRCm39)	S4P	probably damaging	Het
Atp2c1	A	G	9: 105,341,850 (GRCm39)	I146T	probably damaging	Het
Atp6v0e	A	G	17: 26,914,390 (GRCm39)	T72A	probably benign	Het
Bahcc1	T	C	11: 120,163,472 (GRCm39)	V590A	possibly damaging	Het
Bcl6	A	G	16: 23,791,364 (GRCm39)	V330A	possibly damaging	Het
Bcl6	T	C	16: 23,791,652 (GRCm39)	D234G	probably damaging	Het
Btaf1	C	T	19: 36,926,502 (GRCm39)	T58I	probably damaging	Het
Ccdc175	A	T	12: 72,175,183 (GRCm39)		probably null	Het
Cdca4	C	A	12: 112,785,189 (GRCm39)	V180L	probably benign	Het
Ces1g	C	A	8: 94,043,665 (GRCm39)	G425C	possibly damaging	Het
Chl1	T	C	6: 103,683,409 (GRCm39)	L745P	probably damaging	Het
Clec4g	T	A	8: 3,769,518 (GRCm39)	T42S	possibly damaging	Het
Ctsg	A	C	14: 56,337,489 (GRCm39)	I238S	probably damaging	Het
Cyb5rl	A	T	4: 106,944,513 (GRCm39)	E41V	unknown	Het
Dcdc2a	A	G	13: 25,291,681 (GRCm39)	E222G	probably benign	Het
Dnaaf1	G	T	8: 120,323,538 (GRCm39)	G509V	possibly damaging	Het
Dnah5	A	G	15: 28,453,410 (GRCm39)	I4394V	probably benign	Het
Dot1l	T	G	10: 80,626,560 (GRCm39)	S1260R	probably damaging	Het
Dst	T	G	1: 34,208,341 (GRCm39)	I1089S	probably damaging	Het
Efcab3	A	T	11: 104,899,787 (GRCm39)	I4350F	possibly damaging	Het
Eps8l3	A	G	3: 107,791,801 (GRCm39)		probably null	Het
Fam135b	A	G	15: 71,493,917 (GRCm39)	V4A	possibly damaging	Het
Fnip2	T	C	3: 79,388,313 (GRCm39)	E806G	probably benign	Het
Fryl	T	A	5: 73,231,251 (GRCm39)	I1609F	probably benign	Het
Gdi1	G	A	X: 73,350,461 (GRCm39)	R55H	probably benign	Het
Gsn	A	T	2: 35,185,061 (GRCm39)	K339*	probably null	Het
Hecw2	T	A	1: 53,904,283 (GRCm39)	Y1155F	possibly damaging	Het
Kif20b	T	A	19: 34,951,892 (GRCm39)	N1723K	probably damaging	Het
Kif2b	T	C	11: 91,467,650 (GRCm39)	D211G	probably benign	Het
Lhfpl4	C	T	6: 113,153,632 (GRCm39)	V140I	probably benign	Het
Med16	C	T	10: 79,739,177 (GRCm39)	G203D	probably damaging	Het
Mrgpra3	T	A	7: 47,239,389 (GRCm39)	Y179F	probably benign	Het
Muc6	AGGCGCAGAAACCCTGGC	AGGC	7: 141,214,363 (GRCm39)		probably null	Het
Myo18b	A	G	5: 113,022,271 (GRCm39)	S374P	unknown	Het
Myoz1	A	G	14: 20,699,477 (GRCm39)	I287T	possibly damaging	Het
Ncoa6	T	C	2: 155,279,983 (GRCm39)	D11G	probably benign	Het
Nlrp9c	A	G	7: 26,085,046 (GRCm39)	Y178H	probably damaging	Het
Nmur1	T	C	1: 86,315,230 (GRCm39)	T212A	probably damaging	Het
Oacyl	A	G	18: 65,853,323 (GRCm39)	D143G	probably benign	Het
Obox5	A	G	7: 15,492,732 (GRCm39)	Y229C	probably damaging	Het
Or10d1c	A	T	9: 38,893,914 (GRCm39)	M142K	probably benign	Het
Or1j12	A	G	2: 36,342,702 (GRCm39)	Y35C	probably damaging	Het
Or1j18	G	T	2: 36,624,436 (GRCm39)	M34I	probably benign	Het
Or1x2	C	A	11: 50,918,428 (GRCm39)	L200I	probably benign	Het
Or8c13	A	T	9: 38,091,632 (GRCm39)	C162*	probably null	Het
Pcdhb17	A	C	18: 37,619,566 (GRCm39)	N452T	probably benign	Het
Pear1	T	G	3: 87,658,752 (GRCm39)	H901P	probably benign	Het
Peds1	C	G	2: 167,503,398 (GRCm39)	A7P	probably benign	Het
Pi16	A	G	17: 29,545,313 (GRCm39)	Y192C	probably damaging	Het
Pip5k1b	T	G	19: 24,335,424 (GRCm39)	E362D	probably damaging	Het
Pla2g5	T	C	4: 138,531,830 (GRCm39)	D58G	probably damaging	Het
Pole	T	A	5: 110,472,968 (GRCm39)		probably null	Het
Prdm16	G	T	4: 154,429,925 (GRCm39)	T348K	probably damaging	Het
Prkdc	T	A	16: 15,507,207 (GRCm39)	F896I	probably damaging	Het
Prmt7	T	C	8: 106,961,732 (GRCm39)	F215S	unknown	Het
Prss23	T	A	7: 89,159,392 (GRCm39)	T226S	probably damaging	Het
Ptpn14	G	A	1: 189,595,595 (GRCm39)	W739*	probably null	Het
Rfx5	G	T	3: 94,863,850 (GRCm39)	G135C	probably damaging	Het
Scmh1	A	G	4: 120,382,252 (GRCm39)	H573R	probably benign	Het
Serpina5	G	T	12: 104,068,554 (GRCm39)		probably null	Het
Sh3rf2	G	A	18: 42,237,227 (GRCm39)		probably null	Het
Slc38a2	T	C	15: 96,591,182 (GRCm39)	M229V	probably damaging	Het
Slc6a17	C	G	3: 107,400,464 (GRCm39)	G222R	probably damaging	Het
Sp110	C	T	1: 85,507,406 (GRCm39)	G367D	possibly damaging	Het
Srcap	C	A	7: 127,138,213 (GRCm39)	L1128M	probably damaging	Het
Tpra1	T	A	6: 88,885,276 (GRCm39)	I76N	probably damaging	Het
Trav6-4	A	T	14: 53,692,049 (GRCm39)	Y52F	probably benign	Het
Trp63	C	A	16: 25,639,227 (GRCm39)	H138Q	probably damaging	Het
Trub2	A	G	2: 29,669,838 (GRCm39)	V177A	possibly damaging	Het
Ugt2a2	T	C	5: 87,608,255 (GRCm39)	D528G	possibly damaging	Het
Wnk2	C	A	13: 49,256,314 (GRCm39)	R269L	possibly damaging	Het
Zc3h12c	T	A	9: 52,027,226 (GRCm39)	Q731L	possibly damaging	Het

Other mutations in Amfr

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01629:Amfr	APN	8	94,714,136 (GRCm39)	critical splice acceptor site	probably null
IGL02169:Amfr	APN	8	94,731,858 (GRCm39)	splice site	probably null
IGL03218:Amfr	APN	8	94,726,964 (GRCm39)	missense	probably damaging	0.97
FR4449:Amfr	UTSW	8	94,731,787 (GRCm39)	missense	probably damaging	1.00
FR4737:Amfr	UTSW	8	94,731,787 (GRCm39)	missense	probably damaging	1.00
FR4976:Amfr	UTSW	8	94,738,920 (GRCm39)	unclassified	probably benign
R0344:Amfr	UTSW	8	94,713,998 (GRCm39)	splice site	probably null
R0532:Amfr	UTSW	8	94,725,736 (GRCm39)	missense	probably damaging	1.00
R1056:Amfr	UTSW	8	94,712,097 (GRCm39)	missense	probably benign	0.27
R1295:Amfr	UTSW	8	94,701,432 (GRCm39)	missense	probably benign	0.26
R1386:Amfr	UTSW	8	94,712,027 (GRCm39)	missense	possibly damaging	0.58
R1450:Amfr	UTSW	8	94,714,375 (GRCm39)	missense	probably benign	0.45
R1613:Amfr	UTSW	8	94,725,854 (GRCm39)	missense	probably benign	0.00
R1703:Amfr	UTSW	8	94,700,871 (GRCm39)	missense	probably benign
R2857:Amfr	UTSW	8	94,731,842 (GRCm39)	missense	probably damaging	1.00
R2858:Amfr	UTSW	8	94,731,842 (GRCm39)	missense	probably damaging	1.00
R2859:Amfr	UTSW	8	94,731,842 (GRCm39)	missense	probably damaging	1.00
R3109:Amfr	UTSW	8	94,726,934 (GRCm39)	missense	probably damaging	1.00
R3708:Amfr	UTSW	8	94,709,948 (GRCm39)	missense	probably benign	0.05
R4456:Amfr	UTSW	8	94,711,568 (GRCm39)	missense	possibly damaging	0.80
R4600:Amfr	UTSW	8	94,700,849 (GRCm39)	missense	probably damaging	0.99
R4952:Amfr	UTSW	8	94,699,787 (GRCm39)	unclassified	probably benign
R5261:Amfr	UTSW	8	94,702,798 (GRCm39)	critical splice acceptor site	probably null
R5391:Amfr	UTSW	8	94,702,676 (GRCm39)	missense	probably damaging	1.00
R5788:Amfr	UTSW	8	94,726,942 (GRCm39)	missense	probably damaging	1.00
R6238:Amfr	UTSW	8	94,726,992 (GRCm39)	missense	probably damaging	1.00
R6584:Amfr	UTSW	8	94,700,783 (GRCm39)	missense	probably benign	0.00
R6795:Amfr	UTSW	8	94,726,961 (GRCm39)	missense	probably benign	0.09
R6955:Amfr	UTSW	8	94,727,004 (GRCm39)	missense	probably damaging	1.00
R6978:Amfr	UTSW	8	94,727,015 (GRCm39)	missense	probably damaging	0.99
R7224:Amfr	UTSW	8	94,711,484 (GRCm39)	missense	probably damaging	1.00
R7260:Amfr	UTSW	8	94,702,776 (GRCm39)	missense	possibly damaging	0.80
R7289:Amfr	UTSW	8	94,725,754 (GRCm39)	missense	possibly damaging	0.64
R8341:Amfr	UTSW	8	94,725,806 (GRCm39)	missense	probably damaging	0.98
R8858:Amfr	UTSW	8	94,714,070 (GRCm39)	missense	probably damaging	1.00
R9377:Amfr	UTSW	8	94,707,018 (GRCm39)	missense	probably damaging	1.00
RF030:Amfr	UTSW	8	94,738,920 (GRCm39)	unclassified	probably benign
RF035:Amfr	UTSW	8	94,738,920 (GRCm39)	unclassified	probably benign

Predicted Primers

PCR Primer
(F):5'- ATTTCGAAGTTGTCTGGCGAAGAG -3'
(R):5'- CAGTACCTGCTGTCGGACA -3'

Sequencing Primer
(F):5'- TCTGGCGAAGAGTAAAATGTCCCC -3'
(R):5'- CTGTCGGACAGCCTGTTC -3'

Posted On

2019-05-15