Mutagenetix > Incidental Mutation

Incidental Mutation 'R7099:Nuf2'

550680

Institutional Source

Beutler Lab

Gene Symbol

Nuf2

Ensembl Gene

ENSMUSG00000026683

Gene Name

NUF2, NDC80 kinetochore complex component

Synonyms

2410003C07Rik, Nuf2R, Cdca1

MMRRC Submission

045191-MU

Accession Numbers

Essential gene?

Probably essential (E-score: 0.944) question?

Stock #

R7099 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

169325503-169359033 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 169333641 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Methionine at position 345 (T345M)

Ref Sequence

ENSEMBL: ENSMUSP00000106999 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000028000] [ENSMUST00000111368] [ENSMUST00000192248]

AlphaFold

Q99P69

Predicted Effect

probably benign
Transcript: ENSMUST00000028000
AA Change: T345M

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000028000
Gene: ENSMUSG00000026683
AA Change: T345M

Domain	Start	End	E-Value	Type
Pfam:Nuf2	1	149	9.7e-46	PFAM
coiled coil region	174	227	N/A	INTRINSIC
coiled coil region	290	343	N/A	INTRINSIC
coiled coil region	389	462	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111368
AA Change: T345M

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000106999
Gene: ENSMUSG00000026683
AA Change: T345M

Domain	Start	End	E-Value	Type
Pfam:Nuf2	3	146	6.5e-37	PFAM
coiled coil region	174	227	N/A	INTRINSIC
coiled coil region	290	343	N/A	INTRINSIC
coiled coil region	389	462	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000192248

SMART Domains

Protein: ENSMUSP00000141427
Gene: ENSMUSG00000026683

Domain	Start	End	E-Value	Type
Pfam:Nuf2	1	149	2.3e-43	PFAM
SCOP:d1ab4__	154	210	9e-3	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000195342

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.3%

Validation Efficiency

100% (65/65)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that is highly similar to yeast Nuf2, a component of a conserved protein complex associated with the centromere. Yeast Nuf2 disappears from the centromere during meiotic prophase when centromeres lose their connection to the spindle pole body, and plays a regulatory role in chromosome segregation. The encoded protein is found to be associated with centromeres of mitotic HeLa cells, which suggests that this protein is a functional homolog of yeast Nuf2. Alternatively spliced transcript variants that encode the same protein have been described. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 66 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930453N24Rik	C	T	16: 64,591,151 (GRCm39)	A26T	probably benign	Het
Acly	T	C	11: 100,383,117 (GRCm39)		probably null	Het
Adam29	A	C	8: 56,324,439 (GRCm39)	L672V	probably benign	Het
Adgrf1	T	C	17: 43,621,493 (GRCm39)	S577P	probably benign	Het
Ankar	T	C	1: 72,682,452 (GRCm39)	K1371R	probably damaging	Het
Arid5b	T	C	10: 67,934,009 (GRCm39)	D631G	probably damaging	Het
Brpf3	T	C	17: 29,025,611 (GRCm39)	V228A	probably benign	Het
C3	T	C	17: 57,513,276 (GRCm39)	D1457G	probably benign	Het
Calr4	A	T	4: 109,099,426 (GRCm39)	N143I	probably benign	Het
Catsperd	T	G	17: 56,935,811 (GRCm39)		probably null	Het
Cobl	T	A	11: 12,246,540 (GRCm39)	H154L		Het
Cryzl2	G	A	1: 157,316,154 (GRCm39)		probably benign	Het
Dennd1c	A	G	17: 57,374,915 (GRCm39)		probably null	Het
Dnah8	A	T	17: 30,923,698 (GRCm39)	D1222V	possibly damaging	Het
Errfi1	T	C	4: 150,951,225 (GRCm39)	S218P	probably benign	Het
Fbxw27	G	T	9: 109,599,223 (GRCm39)	T398N	probably damaging	Het
Fhod3	A	G	18: 25,223,219 (GRCm39)	D855G	probably benign	Het
Flii	A	G	11: 60,611,481 (GRCm39)	V410A	probably benign	Het
Fsip2	C	A	2: 82,817,968 (GRCm39)	P4567Q	probably benign	Het
Fxyd1	T	G	7: 30,752,458 (GRCm39)	Q66H	probably damaging	Het
Gdi1	G	A	X: 73,350,461 (GRCm39)	R55H	probably benign	Het
Gramd2b	C	T	18: 56,625,017 (GRCm39)	T370I	probably benign	Het
Kdr	A	G	5: 76,104,993 (GRCm39)	V1079A	probably damaging	Het
Lmx1a	G	A	1: 167,658,115 (GRCm39)	G166D	probably damaging	Het
Lrrfip2	A	G	9: 111,002,176 (GRCm39)	R92G	probably benign	Het
Map1a	T	A	2: 121,130,998 (GRCm39)	S605T	probably benign	Het
Megf8	A	T	7: 25,045,945 (GRCm39)	D1496V	probably damaging	Het
Mgam	T	C	6: 40,638,650 (GRCm39)	V461A	probably benign	Het
Muc6	AGGCGCAGAAACCCTGGC	AGGC	7: 141,214,363 (GRCm39)		probably null	Het
Nav3	T	C	10: 109,539,195 (GRCm39)	T2069A	probably benign	Het
Nbeal2	A	T	9: 110,474,506 (GRCm39)		probably null	Het
Ndst1	A	G	18: 60,828,572 (GRCm39)	F661L	possibly damaging	Het
Neu3	G	A	7: 99,463,027 (GRCm39)	T232M	possibly damaging	Het
Nf1	T	C	11: 79,461,156 (GRCm39)	S741P	probably benign	Het
Nr5a1	G	T	2: 38,584,148 (GRCm39)	L424M	probably damaging	Het
Or4d10c	A	G	19: 12,065,530 (GRCm39)	F209L	possibly damaging	Het
Or4k51	A	T	2: 111,585,421 (GRCm39)	T276S	probably benign	Het
Or6d12	T	A	6: 116,493,721 (GRCm39)	*328R	probably null	Het
Or8g33	G	A	9: 39,337,599 (GRCm39)	T256I	probably benign	Het
Otud7a	A	G	7: 63,407,203 (GRCm39)	E502G	possibly damaging	Het
Otulin	A	G	15: 27,608,832 (GRCm39)	L237S	probably damaging	Het
Pias1	A	G	9: 62,788,427 (GRCm39)	M79T		Het
Prom2	T	C	2: 127,381,698 (GRCm39)	E206G	probably benign	Het
Scarb1	A	T	5: 125,381,414 (GRCm39)	N43K	probably damaging	Het
Sdad1	A	G	5: 92,441,832 (GRCm39)	V365A	possibly damaging	Het
Sdk2	T	C	11: 113,725,731 (GRCm39)	T1173A	probably damaging	Het
Sidt1	A	G	16: 44,063,860 (GRCm39)	S803P	probably damaging	Het
Slc45a1	A	T	4: 150,714,030 (GRCm39)	D738E	probably benign	Het
Slc4a7	T	A	14: 14,733,750 (GRCm38)	H53Q	probably damaging	Het
Spata22	T	C	11: 73,231,225 (GRCm39)	F160L	probably benign	Het
Stag1	G	A	9: 100,826,879 (GRCm39)	V949I	probably benign	Het
Syne1	T	C	10: 5,073,744 (GRCm39)	S1200G	probably benign	Het
Tbc1d9	A	G	8: 83,981,520 (GRCm39)	E729G	probably damaging	Het
Tcaf2	C	T	6: 42,607,275 (GRCm39)	M226I	probably benign	Het
Tep1	T	C	14: 51,081,944 (GRCm39)		probably null	Het
Tigd2	C	A	6: 59,187,166 (GRCm39)	T11K	probably damaging	Het
Trappc9	A	G	15: 72,565,468 (GRCm39)	V941A	probably benign	Het
Ugt2b37	A	G	5: 87,388,848 (GRCm39)	M455T	probably benign	Het
Usp42	A	T	5: 143,712,400 (GRCm39)	S95T	probably damaging	Het
Usp44	T	C	10: 93,686,049 (GRCm39)	I488T	possibly damaging	Het
Vmn1r73	T	C	7: 11,490,320 (GRCm39)	I46T	probably damaging	Het
Vmn2r34	A	T	7: 7,675,540 (GRCm39)	I616N	probably damaging	Het
Zfp352	A	G	4: 90,113,117 (GRCm39)	K419R	probably benign	Het
Zfp595	T	A	13: 67,465,711 (GRCm39)	H187L	probably damaging	Het
Zfp804b	A	T	5: 6,822,161 (GRCm39)	S301T	probably benign	Het
Zzef1	T	C	11: 72,763,475 (GRCm39)	V1374A	possibly damaging	Het

Other mutations in Nuf2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00707:Nuf2	APN	1	169,350,004 (GRCm39)	unclassified	probably benign
IGL00980:Nuf2	APN	1	169,338,003 (GRCm39)	missense	probably damaging	1.00
IGL01131:Nuf2	APN	1	169,349,933 (GRCm39)	splice site	probably benign
IGL01310:Nuf2	APN	1	169,326,431 (GRCm39)	missense	probably benign	0.12
IGL01774:Nuf2	APN	1	169,333,641 (GRCm39)	missense	probably benign
IGL01786:Nuf2	APN	1	169,338,052 (GRCm39)	missense	possibly damaging	0.88
IGL01866:Nuf2	APN	1	169,326,407 (GRCm39)	missense	possibly damaging	0.68
IGL02134:Nuf2	APN	1	169,341,069 (GRCm39)	missense	probably benign
IGL02955:Nuf2	APN	1	169,334,807 (GRCm39)	splice site	probably benign
R0350:Nuf2	UTSW	1	169,341,112 (GRCm39)	critical splice acceptor site	probably null
R0390:Nuf2	UTSW	1	169,352,866 (GRCm39)	unclassified	probably benign
R0479:Nuf2	UTSW	1	169,326,503 (GRCm39)	splice site	probably benign
R0578:Nuf2	UTSW	1	169,338,118 (GRCm39)	splice site	probably benign
R0765:Nuf2	UTSW	1	169,350,505 (GRCm39)	unclassified	probably benign
R1351:Nuf2	UTSW	1	169,338,118 (GRCm39)	splice site	probably benign
R1564:Nuf2	UTSW	1	169,326,362 (GRCm39)	missense	unknown
R3747:Nuf2	UTSW	1	169,352,945 (GRCm39)	missense	probably damaging	1.00
R3748:Nuf2	UTSW	1	169,352,945 (GRCm39)	missense	probably damaging	1.00
R3749:Nuf2	UTSW	1	169,352,945 (GRCm39)	missense	probably damaging	1.00
R4601:Nuf2	UTSW	1	169,333,683 (GRCm39)	missense	probably damaging	1.00
R4815:Nuf2	UTSW	1	169,338,037 (GRCm39)	missense	probably damaging	1.00
R5473:Nuf2	UTSW	1	169,334,856 (GRCm39)	missense	probably benign	0.05
R5522:Nuf2	UTSW	1	169,326,453 (GRCm39)	missense	probably damaging	1.00
R5716:Nuf2	UTSW	1	169,349,958 (GRCm39)	missense	probably benign	0.23
R5742:Nuf2	UTSW	1	169,344,191 (GRCm39)	missense	probably damaging	1.00
R6583:Nuf2	UTSW	1	169,332,117 (GRCm39)	missense	probably benign
R6680:Nuf2	UTSW	1	169,342,578 (GRCm39)	splice site	probably null
R7068:Nuf2	UTSW	1	169,349,988 (GRCm39)	missense	probably damaging	1.00
R7186:Nuf2	UTSW	1	169,352,954 (GRCm39)	missense	probably damaging	0.99
R7527:Nuf2	UTSW	1	169,326,422 (GRCm39)	missense	possibly damaging	0.55
R7578:Nuf2	UTSW	1	169,332,097 (GRCm39)	missense	probably benign	0.00
R7836:Nuf2	UTSW	1	169,352,898 (GRCm39)	missense	probably benign	0.00
R9396:Nuf2	UTSW	1	169,337,917 (GRCm39)	missense	probably benign	0.00
R9794:Nuf2	UTSW	1	169,334,954 (GRCm39)	critical splice acceptor site	probably null

Predicted Primers

PCR Primer
(F):5'- TCATTTTGTGACAATAGTGGAGAGC -3'
(R):5'- TGGCTCCATTTCACAATTGTG -3'

Sequencing Primer
(F):5'- GACAGACAGACAGATTAGATAGAAAC -3'
(R):5'- TCACAATTGTGTTTACTCCAGC -3'

Posted On

2019-05-15