Mutagenetix > Incidental Mutation

Incidental Mutation 'R7138:Nipsnap3a'

553178

Institutional Source

Beutler Lab

Gene Symbol

Nipsnap3a

Ensembl Gene

ENSMUSG00000015242

Gene Name

nipsnap homolog 3A

Synonyms

1700054F22Rik

MMRRC Submission

045249-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7138 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

52989284-53000854 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 52993978 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Arginine at position 20 (C20R)

Ref Sequence

ENSEMBL: ENSMUSP00000140727 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000015386] [ENSMUST00000107666] [ENSMUST00000188045]

AlphaFold

B1AWZ3

Predicted Effect

probably benign
Transcript: ENSMUST00000015386
AA Change: C20R

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000015386
Gene: ENSMUSG00000015242
AA Change: C20R

Domain	Start	End	E-Value	Type
Pfam:NIPSNAP	35	134	8e-28	PFAM
Pfam:NIPSNAP	144	243	2e-27	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000107666
AA Change: C22R

PolyPhen 2 Score 0.005 (Sensitivity: 0.97; Specificity: 0.74)

SMART Domains

Protein: ENSMUSP00000103293
Gene: ENSMUSG00000015242
AA Change: C22R

Domain	Start	End	E-Value	Type
Pfam:NIPSNAP	37	136	1.9e-30	PFAM
Pfam:NIPSNAP	146	245	6.7e-24	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000188045
AA Change: C20R

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000140727
Gene: ENSMUSG00000015242
AA Change: C20R

Domain	Start	End	E-Value	Type
Pfam:NIPSNAP	35	134	8e-28	PFAM
Pfam:NIPSNAP	144	243	2e-27	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca4	T	A	3: 121,899,113 (GRCm39)	C698*	probably null	Het
Acacb	G	A	5: 114,345,387 (GRCm39)	V947M	probably benign	Het
Acadsb	T	G	7: 131,042,968 (GRCm39)	L343R	probably damaging	Het
Adgrf2	C	T	17: 43,021,874 (GRCm39)	E317K	probably damaging	Het
Agap2	A	G	10: 126,923,154 (GRCm39)	T663A	unknown	Het
Akap8	A	T	17: 32,535,515 (GRCm39)	F166L	possibly damaging	Het
Ankrd17	A	T	5: 90,390,836 (GRCm39)	M2278K	probably benign	Het
Avl9	T	C	6: 56,705,242 (GRCm39)	S148P	probably damaging	Het
Brf1	T	C	12: 112,933,835 (GRCm39)	E266G	probably damaging	Het
Cabin1	T	C	10: 75,581,187 (GRCm39)	K380E	probably damaging	Het
Catsper2	T	C	2: 121,227,544 (GRCm39)	D542G	possibly damaging	Het
Cbln4	C	A	2: 171,884,095 (GRCm39)	D42Y	probably damaging	Het
Ccn6	T	A	10: 39,034,473 (GRCm39)	Q43L	possibly damaging	Het
Cd5	C	T	19: 10,697,668 (GRCm39)	R437Q	probably damaging	Het
Ceacam18	G	C	7: 43,288,706 (GRCm39)	E152D	possibly damaging	Het
Chd8	A	G	14: 52,451,955 (GRCm39)	S1347P	possibly damaging	Het
Chodl	T	G	16: 78,738,335 (GRCm39)	I101R	probably damaging	Het
Clk4	T	G	11: 51,168,759 (GRCm39)	F377L	probably damaging	Het
Cntnap3	C	T	13: 64,929,539 (GRCm39)		probably null	Het
Dab2	A	G	15: 6,458,780 (GRCm39)	S231G	probably benign	Het
Disp2	T	A	2: 118,617,361 (GRCm39)	H118Q	probably benign	Het
Dnah10	T	C	5: 124,900,009 (GRCm39)	F3869S	probably damaging	Het
Edil3	C	T	13: 89,279,847 (GRCm39)	T175I	probably damaging	Het
Eif1ad18	T	G	12: 88,050,648 (GRCm39)	I61R	probably damaging	Het
Fap	A	G	2: 62,372,522 (GRCm39)	S319P	probably benign	Het
Frmpd2	T	A	14: 33,293,761 (GRCm39)	V1309E	probably benign	Het
Galntl5	T	A	5: 25,394,842 (GRCm39)	S70T	probably benign	Het
Gm5622	G	T	14: 51,893,339 (GRCm39)	E89*	probably null	Het
Gna15	G	A	10: 81,343,881 (GRCm39)	T260M	probably damaging	Het
Gucy2c	A	G	6: 136,705,342 (GRCm39)	I531T	probably damaging	Het
Heatr5b	A	G	17: 79,135,417 (GRCm39)	V238A	probably damaging	Het
Htr2a	A	G	14: 74,943,182 (GRCm39)	Y254C	probably damaging	Het
Inpp5b	A	G	4: 124,679,065 (GRCm39)	R491G	probably damaging	Het
Kcnt2	C	T	1: 140,523,778 (GRCm39)	L1093F	possibly damaging	Het
Kcp	C	A	6: 29,491,861 (GRCm39)	E922*	probably null	Het
Lrp2	G	A	2: 69,296,089 (GRCm39)	A3340V	possibly damaging	Het
Lrrn1	T	G	6: 107,545,336 (GRCm39)	V378G	probably damaging	Het
Naip5	T	A	13: 100,356,338 (GRCm39)	E1092D	probably benign	Het
Net1	G	A	13: 3,938,510 (GRCm39)	R126C	probably damaging	Het
Nxpe2	C	T	9: 48,232,006 (GRCm39)	C317Y	probably damaging	Het
Or10v9	T	A	19: 11,832,652 (GRCm39)	I222F	probably damaging	Het
Or52h1	T	C	7: 103,829,504 (GRCm39)	Y37C	probably damaging	Het
Or8b8	T	C	9: 37,809,360 (GRCm39)	I220T	probably damaging	Het
Or8g54	T	G	9: 39,707,086 (GRCm39)	Y138*	probably null	Het
Orm1	T	A	4: 63,262,949 (GRCm39)	W39R	probably damaging	Het
Pds5b	A	T	5: 150,724,142 (GRCm39)	K1240*	probably null	Het
Pdss1	T	A	2: 22,802,681 (GRCm39)	H173Q	probably damaging	Het
Pebp1	A	G	5: 117,423,882 (GRCm39)	W84R	probably damaging	Het
Pla2g4e	C	T	2: 120,001,759 (GRCm39)	C630Y	probably damaging	Het
Plaat3	T	A	19: 7,556,550 (GRCm39)	V117E	probably damaging	Het
Plekho2	G	T	9: 65,463,635 (GRCm39)	Q405K	probably benign	Het
Plppr2	T	A	9: 21,855,708 (GRCm39)	V227E	probably damaging	Het
Pphln1-ps1	T	A	16: 13,495,589 (GRCm39)	D229E	probably benign	Het
Rapgef4	T	C	2: 72,028,707 (GRCm39)	S393P	probably damaging	Het
Rapgefl1	A	G	11: 98,737,900 (GRCm39)		probably null	Het
Ripk3	C	A	14: 56,025,803 (GRCm39)	R19L	probably benign	Het
Rnase10	G	T	14: 51,247,167 (GRCm39)	V182F	probably damaging	Het
Rsf1	T	A	7: 97,319,002 (GRCm39)	S917R		Het
Sephs2	T	C	7: 126,872,187 (GRCm39)	N302S	possibly damaging	Het
Slc13a2	C	T	11: 78,289,950 (GRCm39)	V455M	possibly damaging	Het
Slc30a2	A	T	4: 134,071,429 (GRCm39)	D54V	probably benign	Het
Slco6c1	T	C	1: 97,047,706 (GRCm39)	E199G	possibly damaging	Het
Snx27	A	T	3: 94,436,247 (GRCm39)	M256K	probably benign	Het
Spag4	T	A	2: 155,908,519 (GRCm39)	S150T	probably benign	Het
Spon1	T	A	7: 113,635,945 (GRCm39)	C720S	probably damaging	Het
Tbc1d22a	T	C	15: 86,123,356 (GRCm39)	S166P	probably benign	Het
Tbc1d9	T	C	8: 83,937,113 (GRCm39)	I65T	probably damaging	Het
Tmem176a	T	A	6: 48,820,953 (GRCm39)	V141D	probably damaging	Het
Tmem268	G	A	4: 63,480,687 (GRCm39)		probably benign	Het
Tonsl	A	G	15: 76,518,976 (GRCm39)	V519A	probably benign	Het
Ttn	G	A	2: 76,612,376 (GRCm39)	P17204S	possibly damaging	Het
Wrap53	T	A	11: 69,454,694 (GRCm39)	D225V	probably benign	Het
Zfhx4	G	A	3: 5,477,107 (GRCm39)	A3241T	possibly damaging	Het
Zfp1002	T	C	2: 150,097,372 (GRCm39)	H47R	probably damaging	Het
Znfx1	T	C	2: 166,898,697 (GRCm39)	R76G	probably benign	Het

Other mutations in Nipsnap3a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL03277:Nipsnap3a	APN	4	52,997,219 (GRCm39)	missense	probably benign	0.23
IGL03351:Nipsnap3a	APN	4	52,994,134 (GRCm39)	missense	probably benign	0.19
R0284:Nipsnap3a	UTSW	4	52,997,178 (GRCm39)	missense	probably benign	0.19
R0347:Nipsnap3a	UTSW	4	52,997,155 (GRCm39)	splice site	probably benign
R0433:Nipsnap3a	UTSW	4	53,000,316 (GRCm39)	missense	probably damaging	1.00
R1691:Nipsnap3a	UTSW	4	52,994,185 (GRCm39)	missense	probably null	0.35
R4222:Nipsnap3a	UTSW	4	52,997,251 (GRCm39)	missense	probably benign	0.00
R4223:Nipsnap3a	UTSW	4	52,997,251 (GRCm39)	missense	probably benign	0.00
R4356:Nipsnap3a	UTSW	4	52,995,979 (GRCm39)	critical splice donor site	probably null
R7039:Nipsnap3a	UTSW	4	53,000,130 (GRCm39)	missense	probably damaging	1.00
R7436:Nipsnap3a	UTSW	4	52,994,159 (GRCm39)	missense	probably damaging	1.00
R7453:Nipsnap3a	UTSW	4	52,995,882 (GRCm39)	missense	probably benign	0.00
R7817:Nipsnap3a	UTSW	4	52,997,279 (GRCm39)	missense	probably damaging	1.00
R9502:Nipsnap3a	UTSW	4	52,994,039 (GRCm39)	missense	probably benign	0.44
Z1176:Nipsnap3a	UTSW	4	52,997,216 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TAAGATAGCAGTGCCTTAGTCTGG -3'
(R):5'- ACAGTGTTTATTCTGCCTCCAAATC -3'

Sequencing Primer
(F):5'- GCATGAAGAGGTTACTTAACATGTC -3'
(R):5'- ATTCTGCCTCCAAATCCTACAG -3'

Posted On

2019-05-15