Mutagenetix > Incidental Mutation

Incidental Mutation 'PIT4403001:Cmtr1'

555500

Institutional Source

Beutler Lab

Gene Symbol

Cmtr1

Ensembl Gene

ENSMUSG00000024019

Gene Name

cap methyltransferase 1

Synonyms

1300018I05Rik, Ftsjd2

Accession Numbers

Essential gene?

Probably essential (E-score: 0.970) question?

Stock #

PIT4403001 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

29879569-29924953 bp(+) (GRCm39)

Type of Mutation

critical splice donor site (2 bp from exon)

DNA Base Change (assembly)

T to G at 29917047 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000024816 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000024816] [ENSMUST00000123502] [ENSMUST00000129091] [ENSMUST00000130871] [ENSMUST00000131807] [ENSMUST00000137079]

AlphaFold

Q9DBC3

Predicted Effect

probably null
Transcript: ENSMUST00000024816

SMART Domains

Protein: ENSMUSP00000024816
Gene: ENSMUSG00000024019

Domain	Start	End	E-Value	Type
G_patch	84	130	1.93e-10	SMART
Pfam:FtsJ	231	448	9.5e-42	PFAM
SCOP:d1ckma2	625	718	4e-3	SMART
WW	752	785	2.05e-5	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000123502

SMART Domains

Protein: ENSMUSP00000119013
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	9	92	7.6e-34	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000129091

SMART Domains

Protein: ENSMUSP00000116591
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	10	93	3.1e-36	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000130871

SMART Domains

Protein: ENSMUSP00000117838
Gene: ENSMUSG00000098374

Domain	Start	End	E-Value	Type
FHA	37	92	5.55e-8	SMART
low complexity region	116	130	N/A	INTRINSIC
low complexity region	299	317	N/A	INTRINSIC
RING	406	443	3.64e-7	SMART
G_patch	524	570	1.93e-10	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000131807

SMART Domains

Protein: ENSMUSP00000120238
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	5	49	2.1e-16	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000137079

SMART Domains

Protein: ENSMUSP00000115603
Gene: ENSMUSG00000024018

Domain	Start	End	E-Value	Type
Pfam:CCDC-167	9	53	1.1e-16	PFAM

Coding Region Coverage

1x: 92.7%
3x: 90.5%
10x: 84.9%
20x: 73.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adh4	T	C	3: 138,129,939 (GRCm39)	V255A	probably damaging	Het
Ahnak	T	C	19: 8,983,540 (GRCm39)	I1608T	possibly damaging	Het
Atm	A	T	9: 53,412,282 (GRCm39)	D955E	probably benign	Het
Cacybp	A	G	1: 160,033,764 (GRCm39)	S113P	probably damaging	Het
Cenpu	C	T	8: 47,015,564 (GRCm39)	P160S	possibly damaging	Het
Clstn3	C	T	6: 124,434,982 (GRCm39)	G348D	probably damaging	Het
Dlgap2	T	C	8: 14,881,528 (GRCm39)	S867P	probably damaging	Het
Fbn1	A	T	2: 125,184,831 (GRCm39)	C1654S	probably damaging	Het
Fbxl3	G	A	14: 103,332,900 (GRCm39)	T26M	possibly damaging	Het
Garnl3	A	T	2: 32,880,770 (GRCm39)	L874Q	probably damaging	Het
Gcm2	A	G	13: 41,256,315 (GRCm39)	V478A	probably benign	Het
Gm1527	T	C	3: 28,972,134 (GRCm39)	I417T	possibly damaging	Het
Grip1	A	G	10: 119,765,833 (GRCm39)	E55G	probably damaging	Het
Ighv1-4	A	G	12: 114,450,824 (GRCm39)	S95P	probably damaging	Het
Jak3	C	T	8: 72,136,993 (GRCm39)	T723I	probably benign	Het
Jup	A	G	11: 100,268,913 (GRCm39)		probably null	Het
Kcng3	A	G	17: 83,895,611 (GRCm39)	L285S	probably damaging	Het
Kmt2b	G	A	7: 30,285,114 (GRCm39)	P593S	probably damaging	Het
Matcap1	T	C	8: 106,011,376 (GRCm39)	N253D	probably benign	Het
Mstn	T	C	1: 53,100,944 (GRCm39)	M7T	probably benign	Het
Myh2	A	T	11: 67,077,533 (GRCm39)	K889N	probably benign	Het
Myo5a	A	G	9: 75,124,805 (GRCm39)	T1787A	probably damaging	Het
Nlrp14	A	T	7: 106,784,099 (GRCm39)	Q607L	possibly damaging	Het
Ntf3	C	T	6: 126,078,789 (GRCm39)	R239Q	probably damaging	Het
Nup85	G	T	11: 115,472,646 (GRCm39)	R492L	probably damaging	Het
Ogfod3	A	C	11: 121,087,561 (GRCm39)		probably null	Het
Or1j18	T	A	2: 36,624,930 (GRCm39)	I199K	probably damaging	Het
Or4c115	T	A	2: 88,927,420 (GRCm39)	M284L	probably benign	Het
Or4k40	A	T	2: 111,251,165 (GRCm39)	F44I	probably benign	Het
Or52h2	A	G	7: 103,838,667 (GRCm39)	V249A	probably benign	Het
Or8d1	T	C	9: 38,766,676 (GRCm39)	I106T	probably benign	Het
Oxct2a	A	T	4: 123,216,237 (GRCm39)	D381E	probably damaging	Het
Pcdh20	G	C	14: 88,704,462 (GRCm39)	P946R	probably damaging	Het
Pdgfc	C	T	3: 81,082,268 (GRCm39)	P154S	probably damaging	Het
Phkg1	T	C	5: 129,894,772 (GRCm39)	T260A	probably benign	Het
Pld4	T	G	12: 112,734,256 (GRCm39)	L374R	probably damaging	Het
Plekhj1	C	T	10: 80,632,293 (GRCm39)	D150N	unknown	Het
Plppr1	T	G	4: 49,337,648 (GRCm39)	N316K	probably benign	Het
Pola2	A	C	19: 6,009,074 (GRCm39)	S95A	possibly damaging	Het
Polq	G	A	16: 36,880,949 (GRCm39)	D1038N	probably benign	Het
Prim1	A	T	10: 127,858,745 (GRCm39)	I218L	probably benign	Het
Prkcz	A	G	4: 155,377,613 (GRCm39)		probably null	Het
Ptgr1	T	C	4: 58,968,794 (GRCm39)	K282E	probably benign	Het
Rbm5	A	G	9: 107,637,535 (GRCm39)	M132T	probably damaging	Het
Scn2a	C	T	2: 65,542,252 (GRCm39)	T785M	probably damaging	Het
Setx	A	G	2: 29,023,967 (GRCm39)	E141G	probably damaging	Het
Slc24a2	A	G	4: 86,950,523 (GRCm39)	F425L	probably benign	Het
Smarcc2	A	T	10: 128,298,893 (GRCm39)	H92L	probably damaging	Het
Tatdn1	C	G	15: 58,777,596 (GRCm39)	E220Q	probably damaging	Het
Tmc7	C	A	7: 118,146,623 (GRCm39)	Q488H	probably benign	Het
Tmc7	T	G	7: 118,146,624 (GRCm39)	Q488P	possibly damaging	Het
Tmem45b	C	T	9: 31,338,188 (GRCm39)	D264N	probably benign	Het
Tmtc4	A	C	14: 123,210,641 (GRCm39)	S72R	probably benign	Het
Tnc	C	A	4: 63,882,904 (GRCm39)	D1906Y	probably damaging	Het
Ubac1	A	T	2: 25,896,609 (GRCm39)	M302K	probably benign	Het
Ubox5	A	G	2: 130,442,597 (GRCm39)	I30T	probably damaging	Het
Vwce	A	G	19: 10,615,461 (GRCm39)	N114S	possibly damaging	Het
Xpo5	T	A	17: 46,550,495 (GRCm39)	D992E	probably benign	Het
Zfhx2	G	A	14: 55,312,437 (GRCm39)	P86S	probably benign	Het
Zfp335	T	C	2: 164,735,636 (GRCm39)	H1106R	possibly damaging	Het
Zfp653	T	A	9: 21,977,053 (GRCm39)	Q166L	probably damaging	Het
Zp3r	T	A	1: 130,510,609 (GRCm39)	N436I	possibly damaging	Het

Other mutations in Cmtr1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00391:Cmtr1	APN	17	29,893,236 (GRCm39)	missense	probably damaging	0.99
IGL00980:Cmtr1	APN	17	29,910,258 (GRCm39)	missense	probably benign	0.00
IGL00987:Cmtr1	APN	17	29,916,143 (GRCm39)	missense	probably benign	0.01
IGL01413:Cmtr1	APN	17	29,916,956 (GRCm39)	missense	probably benign	0.00
IGL01481:Cmtr1	APN	17	29,917,631 (GRCm39)	missense	probably benign	0.02
IGL02281:Cmtr1	APN	17	29,910,255 (GRCm39)	missense	probably benign	0.00
IGL03079:Cmtr1	APN	17	29,882,267 (GRCm39)	missense	possibly damaging	0.71
IGL03376:Cmtr1	APN	17	29,910,385 (GRCm39)	missense	probably benign	0.00
R0256:Cmtr1	UTSW	17	29,916,098 (GRCm39)	missense	probably damaging	1.00
R0505:Cmtr1	UTSW	17	29,895,259 (GRCm39)	missense	probably benign	0.17
R1477:Cmtr1	UTSW	17	29,916,131 (GRCm39)	missense	possibly damaging	0.63
R1623:Cmtr1	UTSW	17	29,906,021 (GRCm39)	splice site	probably null
R1852:Cmtr1	UTSW	17	29,921,229 (GRCm39)	missense	probably benign	0.32
R1867:Cmtr1	UTSW	17	29,893,148 (GRCm39)	missense	probably benign	0.36
R1918:Cmtr1	UTSW	17	29,897,983 (GRCm39)	missense	possibly damaging	0.63
R2070:Cmtr1	UTSW	17	29,913,757 (GRCm39)	critical splice acceptor site	probably null
R2071:Cmtr1	UTSW	17	29,913,757 (GRCm39)	critical splice acceptor site	probably null
R2161:Cmtr1	UTSW	17	29,921,147 (GRCm39)	missense	probably benign	0.03
R2518:Cmtr1	UTSW	17	29,900,954 (GRCm39)	nonsense	probably null
R2763:Cmtr1	UTSW	17	29,899,602 (GRCm39)	missense	possibly damaging	0.89
R4077:Cmtr1	UTSW	17	29,904,949 (GRCm39)	missense	probably damaging	1.00
R4271:Cmtr1	UTSW	17	29,916,956 (GRCm39)	missense	probably benign	0.00
R4363:Cmtr1	UTSW	17	29,893,206 (GRCm39)	missense	probably damaging	1.00
R4723:Cmtr1	UTSW	17	29,906,131 (GRCm39)	splice site	probably null
R4736:Cmtr1	UTSW	17	29,919,216 (GRCm39)	missense	possibly damaging	0.94
R5056:Cmtr1	UTSW	17	29,909,302 (GRCm39)	missense	possibly damaging	0.64
R5492:Cmtr1	UTSW	17	29,909,316 (GRCm39)	missense	probably damaging	1.00
R5704:Cmtr1	UTSW	17	29,882,217 (GRCm39)	missense	possibly damaging	0.95
R5990:Cmtr1	UTSW	17	29,921,135 (GRCm39)	missense	probably benign
R6050:Cmtr1	UTSW	17	29,901,108 (GRCm39)	missense	probably damaging	1.00
R6117:Cmtr1	UTSW	17	29,901,139 (GRCm39)	missense	probably benign	0.43
R6238:Cmtr1	UTSW	17	29,901,122 (GRCm39)	missense	probably damaging	1.00
R7199:Cmtr1	UTSW	17	29,895,174 (GRCm39)	missense	probably benign
R7229:Cmtr1	UTSW	17	29,914,398 (GRCm39)	critical splice acceptor site	probably null
R8337:Cmtr1	UTSW	17	29,893,151 (GRCm39)	missense	probably benign	0.25
R9538:Cmtr1	UTSW	17	29,882,282 (GRCm39)	critical splice donor site	probably null
R9607:Cmtr1	UTSW	17	29,893,196 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- AGCCAGTCTTTGTCTGCTTG -3'
(R):5'- CCTAGTAGAATCCAAGGACTGAAGAC -3'

Sequencing Primer
(F):5'- GCTGCCAAGAAAGCTCCTTTGAG -3'
(R):5'- CCAAGGACTGAAGACAGATTTTC -3'

Posted On

2019-06-07