Mutagenetix > Incidental Mutation

Incidental Mutation 'PIT4418001:Susd2'

555598

Institutional Source

Beutler Lab

Gene Symbol

Susd2

Ensembl Gene

ENSMUSG00000006342

Gene Name

sushi domain containing 2

Synonyms

1200011D11Rik

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.109) question?

Stock #

PIT4418001 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

75472540-75479842 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 75474183 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glycine at position 627 (D627G)

Ref Sequence

ENSEMBL: ENSMUSP00000093197 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000077610] [ENSMUST00000095541]

AlphaFold

Q9DBX3

Predicted Effect

probably benign
Transcript: ENSMUST00000077610
AA Change: D507G

PolyPhen 2 Score 0.356 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000076802
Gene: ENSMUSG00000006342
AA Change: D507G

Domain	Start	End	E-Value	Type
signal peptide	1	24	N/A	INTRINSIC
AMOP	162	310	4.09e-82	SMART
VWD	313	489	1.9e-19	SMART
CCP	602	655	3.37e-17	SMART
transmembrane domain	663	685	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000095541
AA Change: D627G

PolyPhen 2 Score 0.242 (Sensitivity: 0.91; Specificity: 0.88)

SMART Domains

Protein: ENSMUSP00000093197
Gene: ENSMUSG00000006342
AA Change: D627G

Domain	Start	End	E-Value	Type
SO	25	64	4.77e-2	SMART
AMOP	282	430	4.09e-82	SMART
VWD	433	609	1.9e-19	SMART
CCP	722	775	3.37e-17	SMART
transmembrane domain	783	805	N/A	INTRINSIC

Coding Region Coverage

1x: 93.3%
3x: 90.8%
10x: 84.7%
20x: 71.4%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abtb1	T	C	6: 88,816,630 (GRCm39)	Y100C	possibly damaging	Het
Adamtsl1	T	C	4: 86,161,961 (GRCm39)	Y365H	probably damaging	Het
Atad2b	A	T	12: 5,074,587 (GRCm39)	I1049F	probably benign	Het
Atg9b	A	T	5: 24,590,513 (GRCm39)	S859T	possibly damaging	Het
Banp	G	A	8: 122,732,365 (GRCm39)	A380T	probably damaging	Het
Brinp3	C	T	1: 146,777,161 (GRCm39)	T536I	probably damaging	Het
Cacna1c	T	C	6: 118,631,384 (GRCm39)	E1155G		Het
Capn12	T	C	7: 28,585,961 (GRCm39)	S270P	probably benign	Het
Cbs	A	T	17: 31,834,495 (GRCm39)	I498N	possibly damaging	Het
Cep68	T	C	11: 20,189,731 (GRCm39)	K427R	probably benign	Het
Cobl	G	A	11: 12,206,240 (GRCm39)	T545I	possibly damaging	Het
Cr2	T	A	1: 194,839,760 (GRCm39)	M556L	probably benign	Het
Crebbp	A	G	16: 3,932,689 (GRCm39)	S1068P	probably benign	Het
D2hgdh	C	T	1: 93,766,590 (GRCm39)	H385Y	possibly damaging	Het
Dennd1b	T	C	1: 139,008,999 (GRCm39)	L159P		Het
Dnajb4	A	T	3: 151,899,134 (GRCm39)	F31I	possibly damaging	Het
Dnajc16	A	G	4: 141,498,260 (GRCm39)	F369S	probably damaging	Het
Dtl	A	T	1: 191,273,429 (GRCm39)	L493H	possibly damaging	Het
Efcab5	T	A	11: 77,022,877 (GRCm39)	Q612L	possibly damaging	Het
Efr3b	A	T	12: 4,030,490 (GRCm39)	L407Q	possibly damaging	Het
Ehbp1	T	A	11: 22,003,494 (GRCm39)	Q1085L	probably damaging	Het
Ell	T	C	8: 71,034,331 (GRCm39)	V199A	probably damaging	Het
Elmod2	G	T	8: 84,048,171 (GRCm39)	T97K	probably benign	Het
Epn3	T	C	11: 94,386,956 (GRCm39)	E138G	probably damaging	Het
Esf1	A	T	2: 140,001,697 (GRCm39)	F383L	probably benign	Het
Fam193a	A	T	5: 34,597,879 (GRCm39)	T559S	probably damaging	Het
Galr2	T	C	11: 116,174,084 (GRCm39)	V238A	probably benign	Het
Gm3476	T	C	14: 6,118,411 (GRCm38)	I237M	probably benign	Het
Gm5160	A	T	18: 14,558,339 (GRCm39)	I139F	probably damaging	Het
Gpr15	T	C	16: 58,538,313 (GRCm39)	T259A	probably benign	Het
Iffo1	A	G	6: 125,126,746 (GRCm39)	K293E	possibly damaging	Het
Ikbip	T	A	10: 90,932,395 (GRCm39)	H346Q	probably benign	Het
Il4ra	G	A	7: 125,175,510 (GRCm39)	G573S	probably benign	Het
Ing2	A	T	8: 48,122,125 (GRCm39)	M141K	probably benign	Het
Itga6	T	C	2: 71,664,414 (GRCm39)	S517P	probably benign	Het
Itprid1	T	G	6: 55,945,330 (GRCm39)	S684A	probably damaging	Het
Kcnab1	A	G	3: 65,265,741 (GRCm39)	E295G	probably benign	Het
Klhl21	A	C	4: 152,099,835 (GRCm39)	Y515S	possibly damaging	Het
Lcn9	A	T	2: 25,714,553 (GRCm39)	Y139F	probably damaging	Het
Mcemp1	G	T	8: 3,717,052 (GRCm39)	L64F	probably null	Het
Mos	T	C	4: 3,870,814 (GRCm39)	D334G	possibly damaging	Het
Myo9b	T	G	8: 71,775,591 (GRCm39)	F338V	probably damaging	Het
Nefl	G	A	14: 68,323,979 (GRCm39)	V406M	probably damaging	Het
Nfam1	C	A	15: 82,885,689 (GRCm39)	R181L	probably damaging	Het
Ntn5	A	G	7: 45,335,925 (GRCm39)	R119G	probably damaging	Het
Or12e10	G	T	2: 87,640,938 (GRCm39)	C258F	probably damaging	Het
Or5b101	A	T	19: 13,005,095 (GRCm39)	Y199*	probably null	Het
Or7a40	T	C	16: 16,491,719 (GRCm39)	N42S	probably damaging	Het
Plch2	A	T	4: 155,073,960 (GRCm39)	V914E	probably damaging	Het
Ppp1r12c	T	C	7: 4,504,266 (GRCm39)	Q111R	probably null	Het
Ptchd3	T	A	11: 121,732,566 (GRCm39)	Y485*	probably null	Het
Ptchd4	T	A	17: 42,813,980 (GRCm39)	I627N	probably damaging	Het
Retnlb	T	C	16: 48,637,631 (GRCm39)	V19A	probably benign	Het
Rimbp2	T	A	5: 128,857,425 (GRCm39)	T809S	probably benign	Het
Sema6c	T	A	3: 95,077,401 (GRCm39)	D404E	possibly damaging	Het
Slc22a16	C	T	10: 40,479,821 (GRCm39)	A631V	unknown	Het
Snai3	A	T	8: 123,183,073 (GRCm39)	H157Q	probably benign	Het
Snx15	T	C	19: 6,173,961 (GRCm39)	Y52C	probably damaging	Het
Strbp	T	C	2: 37,535,504 (GRCm39)	E68G	probably benign	Het
Sun1	T	A	5: 139,212,343 (GRCm39)	D155E	probably damaging	Het
Tas2r108	T	A	6: 40,470,614 (GRCm39)	I30K	probably damaging	Het
Tmc2	T	C	2: 130,090,571 (GRCm39)	V639A	probably damaging	Het
Trmt1	T	C	8: 85,424,299 (GRCm39)	Y445H	probably damaging	Het
Ttn	A	T	2: 76,597,554 (GRCm39)	N19786K	probably damaging	Het
Vmn1r79	T	G	7: 11,910,766 (GRCm39)	V216G	probably damaging	Het
Wdr64	C	A	1: 175,571,160 (GRCm39)	Y331*	probably null	Het
Zfyve28	A	T	5: 34,390,721 (GRCm39)	V180E	probably damaging	Het
Zic4	C	T	9: 91,261,447 (GRCm39)	T234I	possibly damaging	Het

Other mutations in Susd2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00740:Susd2	APN	10	75,473,882 (GRCm39)	missense	probably benign	0.02
IGL00907:Susd2	APN	10	75,476,765 (GRCm39)	missense	probably benign	0.04
IGL01155:Susd2	APN	10	75,476,726 (GRCm39)	missense	possibly damaging	0.87
IGL01677:Susd2	APN	10	75,475,265 (GRCm39)	missense	possibly damaging	0.91
IGL02146:Susd2	APN	10	75,474,267 (GRCm39)	missense	possibly damaging	0.79
IGL02273:Susd2	APN	10	75,476,772 (GRCm39)	missense	possibly damaging	0.94
IGL02386:Susd2	APN	10	75,475,929 (GRCm39)	missense	probably damaging	0.97
IGL02475:Susd2	APN	10	75,473,333 (GRCm39)	critical splice donor site	probably null
IGL03218:Susd2	APN	10	75,478,459 (GRCm39)	missense	probably benign
R0135:Susd2	UTSW	10	75,474,348 (GRCm39)	missense	probably damaging	1.00
R0396:Susd2	UTSW	10	75,475,745 (GRCm39)	missense	probably damaging	1.00
R0401:Susd2	UTSW	10	75,474,437 (GRCm39)	splice site	probably benign
R0608:Susd2	UTSW	10	75,474,069 (GRCm39)	missense	probably benign	0.45
R0636:Susd2	UTSW	10	75,475,184 (GRCm39)	missense	probably damaging	1.00
R1470:Susd2	UTSW	10	75,473,888 (GRCm39)	missense	probably damaging	1.00
R1470:Susd2	UTSW	10	75,473,888 (GRCm39)	missense	probably damaging	1.00
R1619:Susd2	UTSW	10	75,473,878 (GRCm39)	missense	possibly damaging	0.66
R1634:Susd2	UTSW	10	75,473,389 (GRCm39)	missense	probably benign	0.04
R1866:Susd2	UTSW	10	75,475,566 (GRCm39)	missense	probably damaging	0.98
R4354:Susd2	UTSW	10	75,475,562 (GRCm39)	missense	probably damaging	0.99
R4451:Susd2	UTSW	10	75,475,232 (GRCm39)	missense	probably damaging	1.00
R4721:Susd2	UTSW	10	75,473,964 (GRCm39)	missense	probably benign	0.00
R5546:Susd2	UTSW	10	75,478,052 (GRCm39)	missense	probably benign	0.01
R5768:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R5769:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R5770:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R5771:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R5960:Susd2	UTSW	10	75,475,770 (GRCm39)	missense	probably damaging	1.00
R6152:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R6153:Susd2	UTSW	10	75,473,853 (GRCm39)	missense	probably damaging	0.98
R6259:Susd2	UTSW	10	75,473,880 (GRCm39)	missense	probably damaging	1.00
R6291:Susd2	UTSW	10	75,473,408 (GRCm39)	missense	possibly damaging	0.61
R7106:Susd2	UTSW	10	75,473,887 (GRCm39)	missense	probably damaging	1.00
R7232:Susd2	UTSW	10	75,475,685 (GRCm39)	missense	probably damaging	1.00
R7297:Susd2	UTSW	10	75,478,402 (GRCm39)	missense	probably benign	0.19
R7326:Susd2	UTSW	10	75,478,399 (GRCm39)	missense	probably benign	0.00
R7905:Susd2	UTSW	10	75,475,491 (GRCm39)	nonsense	probably null
R8512:Susd2	UTSW	10	75,475,485 (GRCm39)	missense	probably benign	0.13
R8888:Susd2	UTSW	10	75,475,452 (GRCm39)	missense	possibly damaging	0.58
R8895:Susd2	UTSW	10	75,475,452 (GRCm39)	missense	possibly damaging	0.58
X0025:Susd2	UTSW	10	75,476,406 (GRCm39)	nonsense	probably null
Z1177:Susd2	UTSW	10	75,476,312 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GTGTGGTCTCATCAGGGAAGAG -3'
(R):5'- AAGGTCCTTTCCTGAGTGTG -3'

Sequencing Primer
(F):5'- GTCCGTACACGAATTGGTAGACC -3'
(R):5'- GAGCATTCTGTTGCCTGAGAAG -3'

Posted On

2019-06-07