Mutagenetix > Incidental Mutation

Incidental Mutation 'PIT4468001:Gpr108'

555670

Institutional Source

Beutler Lab

Gene Symbol

Gpr108

Ensembl Gene

ENSMUSG00000005823

Gene Name

G protein-coupled receptor 108

Synonyms

1810015L19Rik

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

PIT4468001 (G1)

Quality Score

81.0075

Status

Not validated

Chromosome

Chromosomal Location

57541635-57555446 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 57554563 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Glutamine at position 25 (L25Q)

Ref Sequence

ENSEMBL: ENSMUSP00000005975 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000005975] [ENSMUST00000005975] [ENSMUST00000019631] [ENSMUST00000224152] [ENSMUST00000224885] [ENSMUST00000224947] [ENSMUST00000225664]

AlphaFold

Q91WD0

Predicted Effect

probably null
Transcript: ENSMUST00000005975
AA Change: L25Q

PolyPhen 2 Score 0.089 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000005975
Gene: ENSMUSG00000005823
AA Change: L25Q

Domain	Start	End	E-Value	Type
low complexity region	61	75	N/A	INTRINSIC
low complexity region	86	103	N/A	INTRINSIC
Pfam:Lung_7-TM_R	240	529	2.3e-98	PFAM
low complexity region	535	547	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000005975
AA Change: L25Q

PolyPhen 2 Score 0.089 (Sensitivity: 0.93; Specificity: 0.85)

SMART Domains

Protein: ENSMUSP00000005975
Gene: ENSMUSG00000005823
AA Change: L25Q

Domain	Start	End	E-Value	Type
low complexity region	61	75	N/A	INTRINSIC
low complexity region	86	103	N/A	INTRINSIC
Pfam:Lung_7-TM_R	240	529	2.3e-98	PFAM
low complexity region	535	547	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000019631

SMART Domains

Protein: ENSMUSP00000019631
Gene: ENSMUSG00000019487

Domain	Start	End	E-Value	Type
FCH	1	94	9.95e-29	SMART
coiled coil region	117	197	N/A	INTRINSIC
low complexity region	310	318	N/A	INTRINSIC
PDB:2KE4\|A	332	425	3e-35	PDB
low complexity region	433	455	N/A	INTRINSIC
low complexity region	458	467	N/A	INTRINSIC
SH3	489	546	2.44e-11	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000224152

Predicted Effect

probably benign
Transcript: ENSMUST00000224885

Predicted Effect

probably benign
Transcript: ENSMUST00000224947

Predicted Effect

probably benign
Transcript: ENSMUST00000225664

Coding Region Coverage

1x: 93.0%
3x: 90.7%
10x: 85.2%
20x: 72.8%

Validation Efficiency

Allele List at MGI

All alleles(3) : Targeted, other(2) Gene trapped(1)

Other mutations in this stock

Total: 56 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610042L04Rik	C	T	14: 4,348,940 (GRCm38)	L34F	probably damaging	Het
Alms1	T	C	6: 85,601,701 (GRCm39)		probably null	Het
Arhgap15	C	A	2: 44,133,143 (GRCm39)	Q350K	probably damaging	Het
Bbs1	T	A	19: 4,956,190 (GRCm39)	H35L	probably benign	Het
Cep85	T	C	4: 133,876,008 (GRCm39)	N468S	probably damaging	Het
Chd8	T	C	14: 52,455,338 (GRCm39)	I1050V	possibly damaging	Het
Chd8	A	C	14: 52,445,453 (GRCm39)	D1709E	probably benign	Het
Clec9a	G	A	6: 129,396,597 (GRCm39)		probably null	Het
Cyp2c70	T	A	19: 40,153,806 (GRCm39)	D261V	probably damaging	Het
Deup1	T	C	9: 15,475,301 (GRCm39)	N420D	possibly damaging	Het
Dpys	T	A	15: 39,720,601 (GRCm39)	D53V	probably damaging	Het
Edem1	A	G	6: 108,821,828 (GRCm39)	E295G	probably damaging	Het
Farp2	G	T	1: 93,456,499 (GRCm39)	E61*	probably null	Het
Fat3	T	G	9: 15,907,647 (GRCm39)	D2785A	probably benign	Het
Fbxo30	T	A	10: 11,166,700 (GRCm39)	M474K	possibly damaging	Het
Gm13090	C	A	4: 151,175,539 (GRCm39)	P93Q	unknown	Het
Gm21976	A	T	13: 98,443,535 (GRCm39)	R229*	probably null	Het
Hdac9	C	A	12: 34,145,933 (GRCm39)	V920F	unknown	Het
Ighv13-2	T	C	12: 114,321,593 (GRCm39)	S49G	probably benign	Het
Krt6a	T	C	15: 101,602,352 (GRCm39)	Y111C	probably damaging	Het
Mib1	T	C	18: 10,798,463 (GRCm39)	S775P	possibly damaging	Het
Mki67	A	G	7: 135,300,876 (GRCm39)	I1386T	probably benign	Het
Mroh2b	A	G	15: 4,942,294 (GRCm39)	E352G	probably damaging	Het
Nfya	A	G	17: 48,702,805 (GRCm39)	M61T	unknown	Het
Ntn4	A	G	10: 93,480,587 (GRCm39)	T104A	probably damaging	Het
Numb	G	A	12: 83,854,921 (GRCm39)	T135I	probably damaging	Het
Or4b12	C	A	2: 90,096,564 (GRCm39)	C70F	probably benign	Het
Or52ab4	A	C	7: 102,987,807 (GRCm39)	E182A	probably damaging	Het
Or5m5	A	T	2: 85,814,792 (GRCm39)	T203S	probably benign	Het
Parpbp	A	C	10: 87,979,935 (GRCm39)	L7R	probably benign	Het
Pcdhb8	T	C	18: 37,489,686 (GRCm39)	Y455H	probably damaging	Het
Pcdhga10	T	A	18: 37,880,936 (GRCm39)	D232E	probably damaging	Het
Pcdhga9	T	A	18: 37,872,527 (GRCm39)	C785*	probably null	Het
Pkd1l3	A	G	8: 110,391,131 (GRCm39)	Y1913C	possibly damaging	Het
Pld4	T	G	12: 112,734,256 (GRCm39)	L374R	probably damaging	Het
Ppp1r13b	A	T	12: 111,805,136 (GRCm39)	I350N	probably benign	Het
Rc3h2	C	A	2: 37,289,651 (GRCm39)	G387V	probably damaging	Het
Rfwd3	T	C	8: 112,009,352 (GRCm39)	H408R	probably benign	Het
Rpl3l	A	G	17: 24,954,457 (GRCm39)	T173A	probably benign	Het
Sdad1	T	C	5: 92,439,777 (GRCm39)	D416G	probably damaging	Het
Srp72	C	A	5: 77,142,053 (GRCm39)	T430K	probably benign	Het
Steap1	C	A	5: 5,786,642 (GRCm39)	G265V	probably damaging	Het
Sulf2	A	T	2: 165,922,720 (GRCm39)	I670N	probably benign	Het
Tcf7l2	A	T	19: 55,730,820 (GRCm39)	D16V	probably damaging	Het
Tmem100	T	A	11: 89,926,187 (GRCm39)	S5T	probably benign	Het
Tnc	C	A	4: 63,882,904 (GRCm39)	D1906Y	probably damaging	Het
Trak1	T	C	9: 121,282,398 (GRCm39)	S436P	probably benign	Het
Ttyh1	T	C	7: 4,122,771 (GRCm39)	Y40H	possibly damaging	Het
Ubxn8	T	A	8: 34,111,569 (GRCm39)	S275C	probably benign	Het
Umodl1	A	G	17: 31,178,252 (GRCm39)	Y76C	probably damaging	Het
Upk3b	C	T	5: 136,071,861 (GRCm39)	T222M	probably benign	Het
Usp42	T	A	5: 143,700,399 (GRCm39)	K1208M	probably damaging	Het
Vmn2r25	A	T	6: 123,816,557 (GRCm39)	D341E	probably benign	Het
Vmn2r83	T	G	10: 79,313,884 (GRCm39)	L164R	probably damaging	Het
Vwa8	G	T	14: 79,420,501 (GRCm39)	R1734L	probably damaging	Het
Zfand2b	G	T	1: 75,146,476 (GRCm39)	R117L	probably benign	Het

Other mutations in Gpr108

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01982:Gpr108	APN	17	57,544,877 (GRCm39)	missense	probably damaging	1.00
IGL02486:Gpr108	APN	17	57,542,977 (GRCm39)	missense	probably damaging	1.00
IGL02810:Gpr108	APN	17	57,549,742 (GRCm39)	missense	probably benign	0.39
IGL03233:Gpr108	APN	17	57,552,042 (GRCm39)	missense	probably benign	0.00
1mM(1):Gpr108	UTSW	17	57,552,352 (GRCm39)	unclassified	probably benign
IGL02799:Gpr108	UTSW	17	57,544,482 (GRCm39)	missense	probably damaging	1.00
R0391:Gpr108	UTSW	17	57,550,101 (GRCm39)	missense	probably benign	0.02
R0469:Gpr108	UTSW	17	57,542,358 (GRCm39)	missense	possibly damaging	0.65
R0510:Gpr108	UTSW	17	57,542,358 (GRCm39)	missense	possibly damaging	0.65
R0613:Gpr108	UTSW	17	57,545,174 (GRCm39)	splice site	probably benign
R1034:Gpr108	UTSW	17	57,542,995 (GRCm39)	missense	probably damaging	1.00
R1141:Gpr108	UTSW	17	57,544,219 (GRCm39)	missense	probably damaging	1.00
R1748:Gpr108	UTSW	17	57,543,217 (GRCm39)	missense	probably damaging	0.99
R2000:Gpr108	UTSW	17	57,543,712 (GRCm39)	missense	probably benign	0.03
R3036:Gpr108	UTSW	17	57,552,323 (GRCm39)	missense	probably benign	0.01
R4087:Gpr108	UTSW	17	57,544,925 (GRCm39)	missense	probably damaging	1.00
R4089:Gpr108	UTSW	17	57,544,925 (GRCm39)	missense	probably damaging	1.00
R5071:Gpr108	UTSW	17	57,542,335 (GRCm39)	missense	probably damaging	1.00
R5566:Gpr108	UTSW	17	57,543,919 (GRCm39)	missense	probably damaging	1.00
R6889:Gpr108	UTSW	17	57,543,990 (GRCm39)	missense	probably damaging	1.00
R7352:Gpr108	UTSW	17	57,543,944 (GRCm39)	missense	probably damaging	1.00
R7587:Gpr108	UTSW	17	57,543,732 (GRCm39)	missense	probably damaging	1.00
R7642:Gpr108	UTSW	17	57,543,228 (GRCm39)	nonsense	probably null
R9574:Gpr108	UTSW	17	57,545,039 (GRCm39)	missense	probably damaging	1.00
Z1177:Gpr108	UTSW	17	57,544,316 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AGTTTAAGCGCCAGGAGTCAG -3'
(R):5'- AATTGGGTGACTAGACCACG -3'

Sequencing Primer
(F):5'- TCCCAGGAGATGAAGCCC -3'
(R):5'- TAGACCACGTCGTGCGACTATTG -3'

Posted On

2019-06-07