Mutagenetix > Incidental Mutation

Incidental Mutation 'PIT4581001:Vmn1r16'

556500

Institutional Source

Beutler Lab

Gene Symbol

Vmn1r16

Ensembl Gene

ENSMUSG00000115792

Gene Name

vomeronasal 1 receptor 16

Synonyms

V1rc29

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.111) question?

Stock #

PIT4581001 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

57297724-57300620 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 57299858 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 255 (W255R)

Ref Sequence

ENSEMBL: ENSMUSP00000154001 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000227168] [ENSMUST00000227283] [ENSMUST00000228356]

AlphaFold

K7N775

Predicted Effect

probably benign
Transcript: ENSMUST00000227168
AA Change: W255R

PolyPhen 2 Score 0.117 (Sensitivity: 0.93; Specificity: 0.86)

Predicted Effect

probably benign
Transcript: ENSMUST00000227283
AA Change: W255R

PolyPhen 2 Score 0.117 (Sensitivity: 0.93; Specificity: 0.86)

Predicted Effect

probably damaging
Transcript: ENSMUST00000228356
AA Change: W255R

PolyPhen 2 Score 0.981 (Sensitivity: 0.75; Specificity: 0.96)

Coding Region Coverage

1x: 92.9%
3x: 90.6%
10x: 84.5%
20x: 71.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 54 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam15	T	C	3: 89,251,139 (GRCm39)	H522R	probably benign	Het
Adcy8	A	T	15: 64,626,666 (GRCm39)	I724N	probably damaging	Het
Cdk2ap1rt	A	G	11: 48,716,971 (GRCm39)	I69T	possibly damaging	Het
Cstdc6	T	C	16: 36,143,294 (GRCm39)	I52V	probably benign	Het
Ctsj	A	T	13: 61,150,370 (GRCm39)	C210S	probably damaging	Het
Cyp2d12	A	G	15: 82,442,652 (GRCm39)	E365G	probably damaging	Het
Dbi	A	T	1: 120,047,642 (GRCm39)	V85E	probably damaging	Het
Dhrs7b	A	G	11: 60,742,723 (GRCm39)	I153M	possibly damaging	Het
Dock10	C	A	1: 80,483,163 (GRCm39)	C2096F	probably damaging	Het
Eid3	T	A	10: 82,703,589 (GRCm39)	I350K	probably damaging	Het
Fam83b	A	T	9: 76,398,434 (GRCm39)	F890I	probably damaging	Het
Fras1	G	A	5: 96,703,160 (GRCm39)	D308N	probably benign	Het
Ftsj3	T	C	11: 106,140,302 (GRCm39)	D822G	unknown	Het
Gabra5	T	C	7: 57,138,605 (GRCm39)	T148A	probably damaging	Het
Gad1	A	G	2: 70,430,011 (GRCm39)	D526G	probably benign	Het
Gm21698	T	A	5: 26,192,350 (GRCm39)	T79S	probably benign	Het
Gon4l	T	G	3: 88,802,821 (GRCm39)	V1144G	probably damaging	Het
Ighv1-24	A	T	12: 114,736,803 (GRCm39)	N32K	probably benign	Het
Islr	T	C	9: 58,064,484 (GRCm39)	N341S	possibly damaging	Het
Mybph	A	G	1: 134,122,479 (GRCm39)	T175A	probably benign	Het
Mycn	T	C	12: 12,990,244 (GRCm39)	K51E	possibly damaging	Het
Myh14	T	C	7: 44,262,906 (GRCm39)	N1763D	probably benign	Het
Myrip	T	C	9: 120,296,583 (GRCm39)	S831P	probably damaging	Het
Neb	G	T	2: 52,178,814 (GRCm39)	A1314E	probably damaging	Het
Notch2	T	C	3: 98,011,778 (GRCm39)	Y599H	probably damaging	Het
Npr1	C	A	3: 90,369,564 (GRCm39)	G387V	probably damaging	Het
Or6e1	T	A	14: 54,519,995 (GRCm39)	D119V	probably damaging	Het
Orai2	G	A	5: 136,179,364 (GRCm39)	T223M	probably damaging	Het
Pcdhga5	A	G	18: 37,829,910 (GRCm39)	E786G	probably benign	Het
Pde6b	A	G	5: 108,576,374 (GRCm39)	T749A	probably benign	Het
Pdzrn3	A	G	6: 101,128,464 (GRCm39)	V734A	probably benign	Het
Pkd1l1	GCC	GCCC	11: 8,866,298 (GRCm39)		probably null	Het
Recql5	C	A	11: 115,823,682 (GRCm39)	K21N	possibly damaging	Het
Rimbp3	G	A	16: 17,028,580 (GRCm39)	S668N	possibly damaging	Het
Sdr42e1	A	T	8: 118,390,257 (GRCm39)	I128N	probably damaging	Het
Shprh	TAAAA	T	10: 11,068,238 (GRCm39)		probably null	Het
Slc15a2	A	T	16: 36,592,405 (GRCm39)	C251S	probably benign	Het
Slc17a4	A	T	13: 24,086,001 (GRCm39)	S329T	probably damaging	Het
Slc35a1	A	G	4: 34,669,501 (GRCm39)	V246A	possibly damaging	Het
Slc37a2	A	T	9: 37,148,701 (GRCm39)	S260R	probably benign	Het
Slco6d1	A	T	1: 98,351,050 (GRCm39)	I177L	possibly damaging	Het
Tmcc1	A	G	6: 116,020,417 (GRCm39)	V345A		Het
Tmod2	T	C	9: 75,504,583 (GRCm39)	Y12C	probably damaging	Het
Top2a	A	T	11: 98,893,790 (GRCm39)	W1035R	probably damaging	Het
Trpc1	A	G	9: 95,618,974 (GRCm39)	S126P	probably benign	Het
Ttn	A	G	2: 76,564,305 (GRCm39)	S28576P	probably damaging	Het
Vmn2r5	T	A	3: 64,411,348 (GRCm39)	K407*	probably null	Het
Vps13b	G	T	15: 35,534,409 (GRCm39)	W908C	probably damaging	Het
Ykt6	A	G	11: 5,912,747 (GRCm39)	K150E	possibly damaging	Het
Zbtb2	A	G	10: 4,319,265 (GRCm39)	Y254H	possibly damaging	Het
Zfp217	A	G	2: 169,956,503 (GRCm39)	S832P	probably benign	Het
Zfp595	A	G	13: 67,465,949 (GRCm39)	S108P	probably benign	Het
Zfp786	A	T	6: 47,796,756 (GRCm39)	F727L	probably damaging	Het
Zzef1	G	A	11: 72,790,498 (GRCm39)	V2151I	probably benign	Het

Other mutations in Vmn1r16

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01350:Vmn1r16	APN	6	57,299,716 (GRCm39)	missense	possibly damaging	0.74
IGL02027:Vmn1r16	APN	6	57,300,044 (GRCm39)	missense	possibly damaging	0.49
IGL02804:Vmn1r16	APN	6	57,300,467 (GRCm39)	missense	probably benign	0.18
IGL03329:Vmn1r16	APN	6	57,300,603 (GRCm39)	missense	probably damaging	0.99
IGL03392:Vmn1r16	APN	6	57,299,879 (GRCm39)	missense	probably damaging	1.00
I1329:Vmn1r16	UTSW	6	57,300,519 (GRCm39)	missense	probably damaging	0.97
R0750:Vmn1r16	UTSW	6	57,299,812 (GRCm39)	missense	probably benign	0.00
R1137:Vmn1r16	UTSW	6	57,300,221 (GRCm39)	missense	probably damaging	1.00
R1239:Vmn1r16	UTSW	6	57,300,618 (GRCm39)	start codon destroyed	probably null	1.00
R1796:Vmn1r16	UTSW	6	57,300,256 (GRCm39)	missense	probably benign	0.03
R1858:Vmn1r16	UTSW	6	57,299,884 (GRCm39)	missense	probably damaging	1.00
R1895:Vmn1r16	UTSW	6	57,299,885 (GRCm39)	missense	probably benign	0.31
R1946:Vmn1r16	UTSW	6	57,299,885 (GRCm39)	missense	probably benign	0.31
R3832:Vmn1r16	UTSW	6	57,300,212 (GRCm39)	missense	probably benign	0.00
R4801:Vmn1r16	UTSW	6	57,300,175 (GRCm39)	missense	probably benign	0.03
R4802:Vmn1r16	UTSW	6	57,300,175 (GRCm39)	missense	probably benign	0.03
R6658:Vmn1r16	UTSW	6	57,300,091 (GRCm39)	nonsense	probably null
R6981:Vmn1r16	UTSW	6	57,300,473 (GRCm39)	missense	probably benign	0.30
R6991:Vmn1r16	UTSW	6	57,299,869 (GRCm39)	nonsense	probably null
R7915:Vmn1r16	UTSW	6	57,300,380 (GRCm39)	missense	probably damaging	1.00
R8214:Vmn1r16	UTSW	6	57,300,424 (GRCm39)	missense	noncoding transcript
R8459:Vmn1r16	UTSW	6	57,300,347 (GRCm39)	missense	probably benign	0.12
R8531:Vmn1r16	UTSW	6	57,299,900 (GRCm39)	missense	probably damaging	1.00
R8676:Vmn1r16	UTSW	6	57,299,814 (GRCm39)	missense	probably benign	0.01
R9096:Vmn1r16	UTSW	6	57,300,250 (GRCm39)	missense	probably benign	0.02
R9097:Vmn1r16	UTSW	6	57,300,250 (GRCm39)	missense	probably benign	0.02
X0061:Vmn1r16	UTSW	6	57,300,349 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- CTGGGAATATACAATGCATGCATG -3'
(R):5'- CTGACTACAAGCGCATACATGTTG -3'

Sequencing Primer
(F):5'- CATGCATGCTGACACAATACC -3'
(R):5'- GAATATCTTGTTCAGGCATCAGAGGC -3'

Posted On

2019-06-07