Mutagenetix > Incidental Mutation

Incidental Mutation 'R7162:Ino80d'

557618

Institutional Source

Beutler Lab

Gene Symbol

Ino80d

Ensembl Gene

ENSMUSG00000040865

Gene Name

INO80 complex subunit D

Synonyms

A430093A21Rik

MMRRC Submission

045261-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7162 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

63086960-63153693 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 63104894 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Methionine at position 394 (T394M)

Ref Sequence

ENSEMBL: ENSMUSP00000119118 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000097718] [ENSMUST00000133236] [ENSMUST00000137511] [ENSMUST00000153992] [ENSMUST00000165066] [ENSMUST00000172416]

AlphaFold

Q66JY2

Predicted Effect

probably damaging
Transcript: ENSMUST00000097718
AA Change: T394M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000095325
Gene: ENSMUSG00000040865
AA Change: T394M

Domain	Start	End	E-Value	Type
low complexity region	91	101	N/A	INTRINSIC
low complexity region	153	158	N/A	INTRINSIC
low complexity region	249	260	N/A	INTRINSIC
low complexity region	314	325	N/A	INTRINSIC
Pfam:zf-C3Hc3H	336	402	1.2e-22	PFAM
low complexity region	414	459	N/A	INTRINSIC
low complexity region	535	549	N/A	INTRINSIC
low complexity region	647	666	N/A	INTRINSIC
low complexity region	706	722	N/A	INTRINSIC
low complexity region	802	821	N/A	INTRINSIC
low complexity region	890	911	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000133236
AA Change: T394M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000123430
Gene: ENSMUSG00000040865
AA Change: T394M

Domain	Start	End	E-Value	Type
low complexity region	91	101	N/A	INTRINSIC
low complexity region	153	158	N/A	INTRINSIC
low complexity region	249	260	N/A	INTRINSIC
low complexity region	314	325	N/A	INTRINSIC
Pfam:zf-C3Hc3H	337	401	4.3e-20	PFAM
low complexity region	414	459	N/A	INTRINSIC
low complexity region	535	549	N/A	INTRINSIC
low complexity region	647	666	N/A	INTRINSIC
low complexity region	706	722	N/A	INTRINSIC
low complexity region	802	821	N/A	INTRINSIC
low complexity region	890	911	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000137511
AA Change: T394M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000119118
Gene: ENSMUSG00000040865
AA Change: T394M

Domain	Start	End	E-Value	Type
low complexity region	91	101	N/A	INTRINSIC
low complexity region	153	158	N/A	INTRINSIC
low complexity region	249	260	N/A	INTRINSIC
low complexity region	314	325	N/A	INTRINSIC
Pfam:zf-C3Hc3H	336	402	4.3e-23	PFAM
low complexity region	414	438	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000153992
AA Change: T394M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000115332
Gene: ENSMUSG00000040865
AA Change: T394M

Domain	Start	End	E-Value	Type
low complexity region	91	101	N/A	INTRINSIC
low complexity region	153	158	N/A	INTRINSIC
low complexity region	249	260	N/A	INTRINSIC
low complexity region	314	325	N/A	INTRINSIC
Pfam:zf-C3Hc3H	336	402	4.3e-23	PFAM
low complexity region	414	431	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000165066
AA Change: T499M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000130864
Gene: ENSMUSG00000040865
AA Change: T499M

Domain	Start	End	E-Value	Type
Pfam:zf-C3Hc3H	18	79	5.9e-21	PFAM
low complexity region	196	206	N/A	INTRINSIC
low complexity region	258	263	N/A	INTRINSIC
low complexity region	354	365	N/A	INTRINSIC
low complexity region	419	430	N/A	INTRINSIC
Pfam:zf-C3Hc3H	442	506	7e-21	PFAM
low complexity region	519	564	N/A	INTRINSIC
low complexity region	640	654	N/A	INTRINSIC
low complexity region	752	771	N/A	INTRINSIC
low complexity region	811	827	N/A	INTRINSIC
low complexity region	907	926	N/A	INTRINSIC
low complexity region	995	1016	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000172416
AA Change: T394M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000127378
Gene: ENSMUSG00000040865
AA Change: T394M

Domain	Start	End	E-Value	Type
low complexity region	91	101	N/A	INTRINSIC
low complexity region	153	158	N/A	INTRINSIC
low complexity region	249	260	N/A	INTRINSIC
low complexity region	314	325	N/A	INTRINSIC
Pfam:zf-C3Hc3H	336	402	1.2e-22	PFAM
low complexity region	414	459	N/A	INTRINSIC
low complexity region	535	549	N/A	INTRINSIC
low complexity region	647	666	N/A	INTRINSIC
low complexity region	706	722	N/A	INTRINSIC
low complexity region	802	821	N/A	INTRINSIC
low complexity region	890	911	N/A	INTRINSIC

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.0%

Validation Efficiency

99% (85/86)

Allele List at MGI

Other mutations in this stock

Total: 86 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Akp3	C	T	1: 87,055,471 (GRCm39)	T506I	unknown	Het
Ank1	T	C	8: 23,622,370 (GRCm39)	W1640R	possibly damaging	Het
Atp2a2	A	G	5: 122,627,387 (GRCm39)	M126T	probably benign	Het
Bptf	A	T	11: 106,934,457 (GRCm39)		probably null	Het
Brat1	T	C	5: 140,696,004 (GRCm39)	V125A	probably benign	Het
Cables1	T	C	18: 12,059,423 (GRCm39)		probably null	Het
Cabp5	A	T	7: 13,135,260 (GRCm39)	M67L	probably damaging	Het
Cacna1b	A	C	2: 24,590,034 (GRCm39)	I558S	probably benign	Het
Ccdc166	A	G	15: 75,853,044 (GRCm39)	S308P	probably benign	Het
Cfap57	C	T	4: 118,472,128 (GRCm39)	V84I	probably benign	Het
Cfhr2	A	G	1: 139,741,264 (GRCm39)	V237A	probably benign	Het
Clybl	C	A	14: 122,608,732 (GRCm39)	S108*	probably null	Het
Cubn	A	G	2: 13,347,309 (GRCm39)	Y2070H	probably damaging	Het
Cyp8b1	A	G	9: 121,744,777 (GRCm39)	F185S	probably damaging	Het
Dennd2c	T	A	3: 103,063,423 (GRCm39)	V620D	probably damaging	Het
Dis3l2	T	C	1: 86,971,752 (GRCm39)	F597L	possibly damaging	Het
Eif3f	G	A	7: 108,539,938 (GRCm39)	R282H	probably benign	Het
Ell	C	A	8: 71,031,559 (GRCm39)	R86S	possibly damaging	Het
Eppk1	A	G	15: 75,990,809 (GRCm39)	V2024A	possibly damaging	Het
Exoc6	T	C	19: 37,565,566 (GRCm39)	I214T	probably damaging	Het
Faim2	A	G	15: 99,419,048 (GRCm39)		probably null	Het
Gli1	A	G	10: 127,168,306 (GRCm39)	S516P	probably benign	Het
Gm18596	A	T	10: 77,578,034 (GRCm39)	S147T	unknown	Het
Gm19965	A	G	1: 116,750,095 (GRCm39)	Y592C	unknown	Het
Gng12	T	C	6: 66,994,285 (GRCm39)	S36P	unknown	Het
Gramd2b	G	A	18: 56,618,529 (GRCm39)		probably null	Het
Hmcn1	T	A	1: 150,624,744 (GRCm39)	T1054S	probably benign	Het
Ifngr1	A	G	10: 19,485,101 (GRCm39)	T367A	probably benign	Het
Il21r	G	T	7: 125,231,483 (GRCm39)	V304L	probably benign	Het
Itfg2	C	T	6: 128,387,546 (GRCm39)	V380M	probably damaging	Het
Kcna5	C	T	6: 126,510,806 (GRCm39)	V441I	possibly damaging	Het
Kcp	T	A	6: 29,497,199 (GRCm39)		probably null	Het
Kdf1	C	T	4: 133,257,229 (GRCm39)	T375I	unknown	Het
Klk1b1	A	T	7: 43,618,671 (GRCm39)	D16V	probably damaging	Het
Krtap5-4	A	C	7: 141,857,335 (GRCm39)	T2P	unknown	Het
Lamtor1	A	G	7: 101,555,243 (GRCm39)	D13G	probably benign	Het
Lrp10	T	C	14: 54,703,163 (GRCm39)	V72A	possibly damaging	Het
Lrrc1	C	A	9: 77,339,472 (GRCm39)	A503S	probably benign	Het
Mylk	A	T	16: 34,742,899 (GRCm39)	D1137V	probably damaging	Het
Myo5b	C	G	18: 74,828,498 (GRCm39)	L717V	probably benign	Het
Myoz3	T	A	18: 60,709,485 (GRCm39)	R225S	probably damaging	Het
Myrf	A	G	19: 10,196,010 (GRCm39)	F335L	possibly damaging	Het
Nfib	A	C	4: 82,268,677 (GRCm39)	S292A	probably damaging	Het
Notch3	G	T	17: 32,365,423 (GRCm39)	H1096Q	probably damaging	Het
Nt5c1a	A	G	4: 123,107,898 (GRCm39)	R194G	probably benign	Het
Or10d3	A	G	9: 39,461,525 (GRCm39)	I214T	probably damaging	Het
Or5a1	A	G	19: 12,097,501 (GRCm39)	F192L	possibly damaging	Het
Parp4	A	G	14: 56,886,333 (GRCm39)	E1804G	unknown	Het
Pcdhac2	A	T	18: 37,278,840 (GRCm39)	I607L	probably benign	Het
Pcdhb5	A	G	18: 37,454,739 (GRCm39)	D373G	probably benign	Het
Pcf11	A	T	7: 92,313,221 (GRCm39)	V154E	probably damaging	Het
Pdia3	T	G	2: 121,260,002 (GRCm39)	D180E	probably benign	Het
Piezo2	C	A	18: 63,257,780 (GRCm39)	V313F	possibly damaging	Het
Pik3ap1	C	A	19: 41,309,965 (GRCm39)	A452S	probably benign	Het
Plb1	A	G	5: 32,507,007 (GRCm39)	K1194R	probably benign	Het
Pld3	A	C	7: 27,231,899 (GRCm39)	W431G	probably damaging	Het
Plekha3	T	C	2: 76,523,110 (GRCm39)		probably null	Het
Ppm1f	G	T	16: 16,732,057 (GRCm39)	R169L	probably damaging	Het
Ppp2r3d	A	G	9: 124,439,673 (GRCm38)	V60A		Het
Prop1	T	A	11: 50,842,881 (GRCm39)	D102V	probably damaging	Het
Rbm27	G	A	18: 42,447,092 (GRCm39)	G446R	unknown	Het
Rc3h2	C	A	2: 37,299,617 (GRCm39)	V138L	possibly damaging	Het
Rorc	G	A	3: 94,284,915 (GRCm39)		probably null	Het
Sardh	A	G	2: 27,087,702 (GRCm39)	V723A	possibly damaging	Het
Sart3	A	G	5: 113,900,896 (GRCm39)	Y181H	probably damaging	Het
Sbpl	A	T	17: 24,172,439 (GRCm39)	M160K	possibly damaging	Het
Sh3gl3	A	G	7: 81,933,350 (GRCm39)	S238G	probably benign	Het
Slc22a30	A	G	19: 8,314,081 (GRCm39)		probably null	Het
Slc3a1	A	T	17: 85,371,442 (GRCm39)	R665*	probably null	Het
Stk32a	C	A	18: 43,430,649 (GRCm39)	Y186*	probably null	Het
Stxbp6	T	C	12: 44,949,663 (GRCm39)	N89D	probably benign	Het
Svep1	A	G	4: 58,070,262 (GRCm39)	F2508S	possibly damaging	Het
Tas1r1	A	G	4: 152,116,695 (GRCm39)	V313A	possibly damaging	Het
Tmem81	T	C	1: 132,435,355 (GRCm39)	Y54H	probably damaging	Het
Tmtc1	T	C	6: 148,172,985 (GRCm39)	N582S	probably damaging	Het
Top2b	T	C	14: 16,416,653 (GRCm38)	S1138P	probably benign	Het
Trim24	T	A	6: 37,942,456 (GRCm39)	N989K	possibly damaging	Het
Trim72	T	A	7: 127,606,821 (GRCm39)	M145K	probably benign	Het
Ttll9	T	A	2: 152,831,523 (GRCm39)	S154T	probably damaging	Het
Tusc3	T	C	8: 39,593,741 (GRCm39)	V286A	probably benign	Het
Vat1l	C	A	8: 114,963,518 (GRCm39)	H185N	probably damaging	Het
Vmn1r209	A	T	13: 22,990,128 (GRCm39)	D187E	probably damaging	Het
Vmn2r87	T	C	10: 130,313,416 (GRCm39)	N450S	probably benign	Het
Wdr7	T	A	18: 63,857,210 (GRCm39)	D95E	possibly damaging	Het
Zfp937	C	T	2: 150,081,439 (GRCm39)	H490Y	probably benign	Het
Zfp974	A	T	7: 27,610,944 (GRCm39)	H260Q	possibly damaging	Het

Other mutations in Ino80d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00813:Ino80d	APN	1	63,132,462 (GRCm39)	missense	probably damaging	1.00
IGL01552:Ino80d	APN	1	63,097,136 (GRCm39)	utr 3 prime	probably benign
IGL01960:Ino80d	APN	1	63,097,306 (GRCm39)	missense	probably damaging	0.98
IGL02374:Ino80d	APN	1	63,125,220 (GRCm39)	missense	possibly damaging	0.63
IGL03201:Ino80d	APN	1	63,097,467 (GRCm39)	missense	probably damaging	1.00
IGL03248:Ino80d	APN	1	63,107,341 (GRCm39)	critical splice donor site	probably null
Creepy	UTSW	1	63,118,206 (GRCm39)	missense	possibly damaging	0.88
Friable	UTSW	1	63,101,285 (GRCm39)	missense	probably damaging	1.00
Herpes	UTSW	1	63,104,993 (GRCm39)	missense	probably damaging	1.00
PIT4696001:Ino80d	UTSW	1	63,125,145 (GRCm39)	missense	probably benign
R0153:Ino80d	UTSW	1	63,097,477 (GRCm39)	missense	probably damaging	0.97
R0371:Ino80d	UTSW	1	63,097,115 (GRCm39)	utr 3 prime	probably benign
R0416:Ino80d	UTSW	1	63,125,435 (GRCm39)	missense	possibly damaging	0.93
R1738:Ino80d	UTSW	1	63,132,624 (GRCm39)	missense	probably damaging	1.00
R2341:Ino80d	UTSW	1	63,104,985 (GRCm39)	missense	possibly damaging	0.75
R2351:Ino80d	UTSW	1	63,124,994 (GRCm39)	missense	probably benign	0.00
R2870:Ino80d	UTSW	1	63,100,198 (GRCm39)	critical splice donor site	probably null
R2870:Ino80d	UTSW	1	63,100,198 (GRCm39)	critical splice donor site	probably null
R3814:Ino80d	UTSW	1	63,113,583 (GRCm39)	missense	probably benign	0.05
R3828:Ino80d	UTSW	1	63,101,237 (GRCm39)	missense	possibly damaging	0.94
R3947:Ino80d	UTSW	1	63,113,662 (GRCm39)	missense	probably benign	0.16
R3949:Ino80d	UTSW	1	63,113,662 (GRCm39)	missense	probably benign	0.16
R5180:Ino80d	UTSW	1	63,125,488 (GRCm39)	start gained	probably benign
R5301:Ino80d	UTSW	1	63,113,578 (GRCm39)	missense	probably benign
R5338:Ino80d	UTSW	1	63,098,098 (GRCm39)	missense	probably benign	0.34
R5634:Ino80d	UTSW	1	63,101,442 (GRCm39)	intron	probably benign
R5716:Ino80d	UTSW	1	63,097,856 (GRCm39)	missense	probably benign	0.01
R5841:Ino80d	UTSW	1	63,097,999 (GRCm39)	missense	probably damaging	1.00
R6219:Ino80d	UTSW	1	63,118,206 (GRCm39)	missense	possibly damaging	0.88
R6222:Ino80d	UTSW	1	63,097,684 (GRCm39)	missense	probably damaging	0.99
R6283:Ino80d	UTSW	1	63,101,285 (GRCm39)	missense	probably damaging	1.00
R6720:Ino80d	UTSW	1	63,097,769 (GRCm39)	missense	probably damaging	1.00
R6835:Ino80d	UTSW	1	63,113,485 (GRCm39)	missense	probably benign
R6897:Ino80d	UTSW	1	63,104,993 (GRCm39)	missense	probably damaging	1.00
R7403:Ino80d	UTSW	1	63,101,378 (GRCm39)	missense	possibly damaging	0.52
R7644:Ino80d	UTSW	1	63,097,930 (GRCm39)	missense	probably benign	0.18
R7816:Ino80d	UTSW	1	63,125,556 (GRCm39)	missense	probably damaging	1.00
R8054:Ino80d	UTSW	1	63,097,837 (GRCm39)	missense	possibly damaging	0.62
R9169:Ino80d	UTSW	1	63,097,930 (GRCm39)	missense	probably benign	0.18
R9170:Ino80d	UTSW	1	63,132,607 (GRCm39)	missense	probably damaging	1.00
R9301:Ino80d	UTSW	1	63,104,969 (GRCm39)	missense	probably damaging	1.00
R9462:Ino80d	UTSW	1	63,097,393 (GRCm39)	missense	probably damaging	1.00
R9618:Ino80d	UTSW	1	63,101,342 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGGCCTCAAATTCAGGGATC -3'
(R):5'- TTGGTATAGGCAGTGCAGC -3'

Sequencing Primer
(F):5'- GGGCCTCAAATTCAGGGATCAATAC -3'
(R):5'- GTATAGGCAGTGCAGCTTTTG -3'

Posted On

2019-06-26