Incidental Mutation 'R7169:Ntn5'
ID558121
Institutional Source Beutler Lab
Gene Symbol Ntn5
Ensembl Gene ENSMUSG00000070564
Gene Namenetrin 5
SynonymsLOC243967
MMRRC Submission
Accession Numbers
Is this an essential gene? Probably non essential (E-score: 0.068) question?
Stock #R7169 (G1)
Quality Score225.009
Status Not validated
Chromosome7
Chromosomal Location45684022-45694556 bp(+) (GRCm38)
Type of Mutationnonsense
DNA Base Change (assembly) C to T at 45686774 bp
ZygosityHeterozygous
Amino Acid Change Arginine to Stop codon at position 210 (R210*)
Ref Sequence ENSEMBL: ENSMUSP00000103371 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000040636] [ENSMUST00000107742] [ENSMUST00000182750] [ENSMUST00000183120]
Predicted Effect probably benign
Transcript: ENSMUST00000040636
SMART Domains Protein: ENSMUSP00000045229
Gene: ENSMUSG00000040364

DomainStartEndE-ValueType
Pfam:Glyco_transf_11 55 362 1.6e-146 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000107742
AA Change: R210*
SMART Domains Protein: ENSMUSP00000103371
Gene: ENSMUSG00000070564
AA Change: R210*

DomainStartEndE-ValueType
signal peptide 1 34 N/A INTRINSIC
low complexity region 115 130 N/A INTRINSIC
EGF_Lam 173 225 4.1e-2 SMART
EGF_Lam 228 275 1.75e-10 SMART
low complexity region 281 289 N/A INTRINSIC
C345C 313 432 4.71e-23 SMART
Predicted Effect probably null
Transcript: ENSMUST00000182750
AA Change: R78*
SMART Domains Protein: ENSMUSP00000138412
Gene: ENSMUSG00000070564
AA Change: R78*

DomainStartEndE-ValueType
EGF_Lam 41 93 4.1e-2 SMART
EGF_Lam 96 156 3.59e-7 SMART
EGF_Lam 159 206 1.75e-10 SMART
low complexity region 212 220 N/A INTRINSIC
C345C 244 363 4.71e-23 SMART
Predicted Effect probably null
Transcript: ENSMUST00000183120
AA Change: R210*
SMART Domains Protein: ENSMUSP00000138144
Gene: ENSMUSG00000070564
AA Change: R210*

DomainStartEndE-ValueType
signal peptide 1 34 N/A INTRINSIC
low complexity region 115 130 N/A INTRINSIC
EGF_Lam 173 225 4.1e-2 SMART
EGF_Lam 228 275 1.75e-10 SMART
low complexity region 281 289 N/A INTRINSIC
low complexity region 346 357 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.7%
  • 20x: 98.9%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for a knock-out allele exhibit ectopic motor neurons that migrate out of the ventral horn and into the motor roots. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 68 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adamts14 A G 10: 61,204,928 V870A probably damaging Het
Ahi1 T G 10: 21,055,019 D919E probably damaging Het
Angptl6 T A 9: 20,875,179 R390S probably damaging Het
Arhgef11 A G 3: 87,727,448 I873V possibly damaging Het
BC024063 T C 10: 82,110,459 Y638H possibly damaging Het
Brsk1 T C 7: 4,715,404 S751P probably benign Het
Cdh20 G A 1: 104,947,353 A287T possibly damaging Het
Clic3 G A 2: 25,458,719 R237H probably benign Het
Cog6 G T 3: 52,989,966 P562H possibly damaging Het
Csnk2a2 A G 8: 95,488,378 Y24H Het
Ctif T C 18: 75,472,016 D484G probably damaging Het
Dennd6b A T 15: 89,188,852 F161I possibly damaging Het
Dnah14 G T 1: 181,702,365 V2235L probably benign Het
Dnah6 A T 6: 73,038,746 V3636D probably damaging Het
Dpm1 A T 2: 168,211,423 Y207* probably null Het
Eml3 A G 19: 8,933,464 T227A probably damaging Het
Enpp5 G A 17: 44,085,264 G356S probably damaging Het
Eppk1 C A 15: 76,105,914 A2256S probably benign Het
Etnppl A T 3: 130,620,696 N80I probably damaging Het
Eya4 A T 10: 23,155,947 N236K probably benign Het
Fam26e T A 10: 34,092,164 T298S probably damaging Het
Fam49a A G 12: 12,359,232 D71G possibly damaging Het
Fam84a A G 12: 14,150,618 F36S probably damaging Het
Gm12886 T G 4: 121,416,751 Q89H probably damaging Het
Gsdme T C 6: 50,227,378 T200A probably benign Het
Hipk1 C T 3: 103,744,217 A1122T probably benign Het
Icos A G 1: 60,995,546 D176G probably damaging Het
Igkv5-43 T A 6: 69,823,535 Y56F probably damaging Het
Il1r1 T C 1: 40,293,359 probably null Het
Ildr2 G A 1: 166,307,934 probably null Het
Ilf3 T A 9: 21,395,426 H305Q probably damaging Het
Insrr A G 3: 87,808,594 H532R probably benign Het
Lmbr1l CACTACATACTACATACTACATACTACATACTACATACTACATAC CACTACATACTACATACTACATACTACATACTACATACTACATACTACATAC 15: 98,909,158 probably null Het
Lmbr1l ACTACAT ACTACATGCTACAT 15: 98,909,194 probably benign Het
Lrrc25 T G 8: 70,617,787 S73A probably benign Het
Lrrn1 T C 6: 107,567,604 L121P probably damaging Het
Ly6c1 C A 15: 75,044,646 V116L probably benign Het
Meltf A G 16: 31,880,162 D30G probably benign Het
Mroh7 T A 4: 106,691,639 D1009V probably damaging Het
Mybpc3 T C 2: 91,118,179 V4A possibly damaging Het
Mycbp2 A G 14: 103,260,200 S979P possibly damaging Het
Nuak1 T C 10: 84,374,745 D493G probably damaging Het
Olfr1281 T A 2: 111,328,598 Y60N probably damaging Het
Olfr1306 A G 2: 111,912,594 M112T possibly damaging Het
Olfr211 G T 6: 116,494,064 A152S probably benign Het
Olfr680-ps1 T C 7: 105,091,190 I150V possibly damaging Het
Oprk1 T A 1: 5,589,081 D11E probably benign Het
Pkd1l2 T A 8: 117,040,835 T1239S possibly damaging Het
Pkm A G 9: 59,671,625 D296G possibly damaging Het
Pof1b A G X: 112,644,345 I544T probably benign Het
Pop5 T A 5: 115,240,228 V77E possibly damaging Het
Ppp1r10 T C 17: 35,929,473 S552P probably damaging Het
Rabggta C G 14: 55,720,901 R101P probably damaging Het
Rorc A T 3: 94,389,180 E243V probably benign Het
Setmar C A 6: 108,065,088 A3E possibly damaging Het
Skor2 T A 18: 76,860,986 V801E probably benign Het
Slc12a7 G A 13: 73,784,560 V56M probably benign Het
Snph T A 2: 151,594,387 N207I probably damaging Het
Snx14 A G 9: 88,398,309 V531A probably damaging Het
Thap1 CAGCATCTGCTCGGAGCA CAGCA 8: 26,160,856 probably null Het
Tlr3 A T 8: 45,397,019 M871K probably damaging Het
Tnfrsf11a A T 1: 105,844,695 R569S possibly damaging Het
Trim66 A G 7: 109,455,121 V1294A probably benign Het
Vldlr G A 19: 27,244,328 V698I probably benign Het
Vmn2r73 G A 7: 85,858,455 Q550* probably null Het
Zdhhc5 A T 2: 84,702,331 probably null Het
Zfhx3 T A 8: 108,951,398 Y3027N possibly damaging Het
Zfp663 C T 2: 165,352,439 S620N probably benign Het
Other mutations in Ntn5
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01726:Ntn5 APN 7 45694247 missense probably damaging 1.00
IGL02024:Ntn5 APN 7 45691406 splice site probably benign
IGL02029:Ntn5 APN 7 45686591 missense probably benign 0.00
IGL02302:Ntn5 APN 7 45694248 missense probably damaging 1.00
IGL02676:Ntn5 APN 7 45691876 splice site probably benign
IGL02891:Ntn5 APN 7 45686224 missense probably damaging 0.99
PIT4418001:Ntn5 UTSW 7 45686501 missense probably damaging 0.97
R0179:Ntn5 UTSW 7 45686313 missense probably damaging 0.99
R0594:Ntn5 UTSW 7 45686681 missense probably damaging 0.99
R0755:Ntn5 UTSW 7 45686528 missense probably benign 0.26
R1200:Ntn5 UTSW 7 45692382 missense possibly damaging 0.94
R4779:Ntn5 UTSW 7 45691471 missense probably damaging 1.00
R5974:Ntn5 UTSW 7 45691424 missense probably damaging 1.00
R5978:Ntn5 UTSW 7 45694013 missense possibly damaging 0.91
R6189:Ntn5 UTSW 7 45693220 missense probably benign
R6738:Ntn5 UTSW 7 45694356 start gained probably null
Z1088:Ntn5 UTSW 7 45694203 missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- AGAAGGTAACCTTTCACTCCCC -3'
(R):5'- CAGCACACTGTGAGAGCAAG -3'

Sequencing Primer
(F):5'- AGGATAGTGGCCAGCTACCTC -3'
(R):5'- CAAGGGAGGAAAAGCATTTCTG -3'
Posted On2019-06-26