Incidental Mutation 'R7173:Vmn1r49'
ID 558419
Institutional Source Beutler Lab
Gene Symbol Vmn1r49
Ensembl Gene ENSMUSG00000095932
Gene Name vomeronasal 1, receptor 49
Synonyms V1rb2, VRi2, V1r5
MMRRC Submission 045265-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.076) question?
Stock # R7173 (G1)
Quality Score 225.009
Status Validated
Chromosome 6
Chromosomal Location 90049068-90050000 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 90049250 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Asparagine at position 251 (Y251N)
Ref Sequence ENSEMBL: ENSMUSP00000145107 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000071865] [ENSMUST00000203791] [ENSMUST00000226368]
AlphaFold Q9WUF1
Predicted Effect possibly damaging
Transcript: ENSMUST00000071865
AA Change: Y251N

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000071762
Gene: ENSMUSG00000095932
AA Change: Y251N

DomainStartEndE-ValueType
transmembrane domain 15 37 N/A INTRINSIC
Pfam:V1R 38 302 5e-165 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000203791
AA Change: Y251N

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)
SMART Domains Protein: ENSMUSP00000145107
Gene: ENSMUSG00000095932
AA Change: Y251N

DomainStartEndE-ValueType
transmembrane domain 15 37 N/A INTRINSIC
Pfam:V1R 38 302 5e-165 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000226368
AA Change: Y251N

PolyPhen 2 Score 0.956 (Sensitivity: 0.79; Specificity: 0.95)
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.7%
  • 20x: 99.0%
Validation Efficiency 100% (79/79)
MGI Phenotype PHENOTYPE: Mice homozygous for a non-functional knock-in allele display abnormal patterns of axonal projections in the accessory olfactory bulb. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 78 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
5031439G07Rik C T 15: 84,833,848 (GRCm39) V403I possibly damaging Het
Actn1 G A 12: 80,224,033 (GRCm39) R475C possibly damaging Het
Adam11 T C 11: 102,662,757 (GRCm39) L191P possibly damaging Het
Adam21 G T 12: 81,606,008 (GRCm39) Q585K probably benign Het
Akap3 T C 6: 126,841,729 (GRCm39) V116A probably benign Het
Alpk1 A T 3: 127,478,024 (GRCm39) Y74* probably null Het
Alx4 G T 2: 93,473,202 (GRCm39) G67C possibly damaging Het
Ankrd17 A T 5: 90,407,976 (GRCm39) C1414S possibly damaging Het
Ankrd44 T C 1: 54,805,550 (GRCm39) D170G probably damaging Het
Arpc2 T A 1: 74,303,531 (GRCm39) M266K probably damaging Het
Atp12a A T 14: 56,621,837 (GRCm39) N794I probably damaging Het
Cabin1 A G 10: 75,582,396 (GRCm39) L340P probably benign Het
Ccer1 A T 10: 97,529,217 (GRCm39) probably benign Het
Cfap73 A T 5: 120,772,279 (GRCm39) Y8N probably damaging Het
Cfhr4 C A 1: 139,659,415 (GRCm39) E705* probably null Het
Cln3 T C 7: 126,178,589 (GRCm39) T173A probably damaging Het
Cxcl3 A T 5: 90,934,008 (GRCm39) probably benign Het
Cyp2c66 G C 19: 39,159,401 (GRCm39) C284S probably benign Het
Dnajc22 T C 15: 98,999,187 (GRCm39) V124A probably benign Het
Dync1h1 C G 12: 110,568,173 (GRCm39) D45E probably benign Het
Elmod3 A T 6: 72,554,235 (GRCm39) probably null Het
Enpp3 A C 10: 24,649,945 (GRCm39) V827G probably damaging Het
Esyt2 T C 12: 116,327,154 (GRCm39) I574T probably benign Het
Ext2 A T 2: 93,643,957 (GRCm39) I108N probably damaging Het
Fam186a T C 15: 99,843,531 (GRCm39) I904M unknown Het
Fmnl2 T C 2: 53,004,202 (GRCm39) I638T unknown Het
Fndc3c1 G C X: 105,478,679 (GRCm39) L724V possibly damaging Het
Fras1 G T 5: 96,925,937 (GRCm39) A3714S probably damaging Het
Fsd1 C A 17: 56,303,696 (GRCm39) R479S possibly damaging Het
Gaa C T 11: 119,169,817 (GRCm39) L624F probably damaging Het
Galnt2 G A 8: 125,032,292 (GRCm39) V86I probably benign Het
Gdap1l1 T G 2: 163,280,608 (GRCm39) V48G probably damaging Het
Gm10549 A G 18: 33,597,462 (GRCm39) T83A unknown Het
Gm11437 T G 11: 84,055,374 (GRCm39) T81P probably benign Het
Gm16253 T C 3: 96,487,979 (GRCm39) probably null Het
Gprc6a A T 10: 51,504,595 (GRCm39) M83K probably benign Het
Grik5 T C 7: 24,767,587 (GRCm39) D31G probably damaging Het
Hcrtr2 A G 9: 76,167,013 (GRCm39) L108P probably damaging Het
Herc2 T A 7: 55,853,575 (GRCm39) L3689Q probably damaging Het
Igf2bp1 T C 11: 95,859,290 (GRCm39) M407V probably benign Het
Irgq A T 7: 24,233,185 (GRCm39) E342V probably damaging Het
Itih2 A T 2: 10,109,974 (GRCm39) I593N probably damaging Het
Ivd G T 2: 118,701,870 (GRCm39) G101C probably damaging Het
Jakmip1 G A 5: 37,248,708 (GRCm39) G123S probably damaging Het
Kif14 T A 1: 136,406,908 (GRCm39) I580N probably damaging Het
Kmt2e A T 5: 23,669,855 (GRCm39) Y114F probably damaging Het
Ly6g5b C A 17: 35,333,680 (GRCm39) C99F probably damaging Het
Map3k20 C T 2: 72,271,758 (GRCm39) P629S probably benign Het
Mpl A G 4: 118,305,741 (GRCm39) probably null Het
Muc4 T C 16: 32,582,862 (GRCm39) F476L probably damaging Het
Mup18 T C 4: 61,590,199 (GRCm39) T110A probably benign Het
Nlrp9a A G 7: 26,257,603 (GRCm39) D407G probably benign Het
Nmur1 G A 1: 86,314,190 (GRCm39) R359C probably benign Het
Or5ac24 T C 16: 59,165,510 (GRCm39) T185A probably benign Het
Or5p64 C T 7: 107,854,955 (GRCm39) C130Y possibly damaging Het
Panx3 A T 9: 37,572,596 (GRCm39) M318K probably damaging Het
Pcnx1 T C 12: 81,999,777 (GRCm39) probably null Het
Pcsk5 T C 19: 17,455,241 (GRCm39) Y1063C possibly damaging Het
Psme3ip1 A T 8: 95,315,486 (GRCm39) F15L probably damaging Het
Rere G A 4: 150,553,195 (GRCm39) R129H probably damaging Het
Rpgrip1 A G 14: 52,349,633 (GRCm39) Y7C possibly damaging Het
Serpina6 T C 12: 103,613,253 (GRCm39) N349S possibly damaging Het
Slc10a1 T G 12: 81,002,750 (GRCm39) E296A probably damaging Het
Slc2a9 A T 5: 38,610,214 (GRCm39) probably null Het
Sptan1 T A 2: 29,873,221 (GRCm39) M138K probably benign Het
Tbl3 T C 17: 24,924,233 (GRCm39) T175A probably benign Het
Tbrg4 T C 11: 6,570,810 (GRCm39) T221A possibly damaging Het
Tenm2 T C 11: 35,932,378 (GRCm39) T1739A probably damaging Het
Tmed5 T C 5: 108,280,187 (GRCm39) D35G probably benign Het
Tnfsf15 A T 4: 63,647,889 (GRCm39) S250R probably damaging Het
Tnpo2 G T 8: 85,781,707 (GRCm39) V830F probably benign Het
Ttbk2 G T 2: 120,570,592 (GRCm39) S1187Y probably damaging Het
Ttn G A 2: 76,625,029 (GRCm39) T15183M possibly damaging Het
Tubgcp3 T C 8: 12,689,259 (GRCm39) probably null Het
Vmn1r38 T C 6: 66,753,278 (GRCm39) I279M possibly damaging Het
Vmn1r66 C T 7: 10,008,482 (GRCm39) V184I probably benign Het
Vmn2r26 T A 6: 124,038,255 (GRCm39) M610K probably benign Het
Xrn2 C T 2: 146,884,013 (GRCm39) P591S probably damaging Het
Other mutations in Vmn1r49
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01293:Vmn1r49 APN 6 90,049,394 (GRCm39) missense probably damaging 0.99
IGL03230:Vmn1r49 APN 6 90,049,650 (GRCm39) missense probably damaging 1.00
IGL03308:Vmn1r49 APN 6 90,049,341 (GRCm39) missense possibly damaging 0.67
R0517:Vmn1r49 UTSW 6 90,049,720 (GRCm39) missense probably damaging 0.98
R0638:Vmn1r49 UTSW 6 90,049,648 (GRCm39) missense possibly damaging 0.95
R1498:Vmn1r49 UTSW 6 90,049,298 (GRCm39) missense probably damaging 1.00
R1649:Vmn1r49 UTSW 6 90,049,623 (GRCm39) missense possibly damaging 0.66
R1668:Vmn1r49 UTSW 6 90,049,764 (GRCm39) missense probably benign 0.07
R1816:Vmn1r49 UTSW 6 90,049,785 (GRCm39) missense possibly damaging 0.93
R2071:Vmn1r49 UTSW 6 90,049,184 (GRCm39) missense probably benign 0.00
R2155:Vmn1r49 UTSW 6 90,049,441 (GRCm39) missense probably damaging 0.99
R2274:Vmn1r49 UTSW 6 90,049,126 (GRCm39) missense probably benign 0.23
R4222:Vmn1r49 UTSW 6 90,049,228 (GRCm39) missense probably benign 0.06
R4614:Vmn1r49 UTSW 6 90,049,534 (GRCm39) missense probably benign 0.00
R4797:Vmn1r49 UTSW 6 90,049,612 (GRCm39) missense probably benign 0.13
R4978:Vmn1r49 UTSW 6 90,049,872 (GRCm39) missense probably benign 0.30
R5227:Vmn1r49 UTSW 6 90,049,753 (GRCm39) missense probably benign 0.00
R5959:Vmn1r49 UTSW 6 90,049,786 (GRCm39) missense probably damaging 1.00
R6741:Vmn1r49 UTSW 6 90,049,195 (GRCm39) missense probably benign 0.19
R6744:Vmn1r49 UTSW 6 90,049,184 (GRCm39) missense probably benign 0.00
R7457:Vmn1r49 UTSW 6 90,049,534 (GRCm39) missense probably benign 0.00
R7573:Vmn1r49 UTSW 6 90,049,843 (GRCm39) missense probably benign 0.06
R8360:Vmn1r49 UTSW 6 90,049,991 (GRCm39) missense probably benign 0.06
R8399:Vmn1r49 UTSW 6 90,049,689 (GRCm39) nonsense probably null
R9560:Vmn1r49 UTSW 6 90,049,382 (GRCm39) missense probably benign 0.03
Predicted Primers PCR Primer
(F):5'- TAGCACTACTGCCAAAATGCTG -3'
(R):5'- ACTCTTATGGCCATCAGGGAAAC -3'

Sequencing Primer
(F):5'- ATTATCAAACCATTCCGTTCACTG -3'
(R):5'- GGAAACCTTTCTTATCAGTCTCATGG -3'
Posted On 2019-06-26