Mutagenetix > Incidental Mutation

Incidental Mutation 'R7178:Or5t17'

558741

Institutional Source

Beutler Lab

Gene Symbol

Or5t17

Ensembl Gene

ENSMUSG00000049843

Gene Name

olfactory receptor family 5 subfamily T member 17

Synonyms

MOR179-4, GA_x6K02T2Q125-48487992-48488966, Olfr1102

MMRRC Submission

045232-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.121) question?

Stock #

R7178 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

86832276-86833338 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 86832879 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Isoleucine at position 189 (V189I)

Ref Sequence

ENSEMBL: ENSMUSP00000149634 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000055129] [ENSMUST00000214002]

AlphaFold

Q8VES2

Predicted Effect

probably benign
Transcript: ENSMUST00000055129
AA Change: V189I

PolyPhen 2 Score 0.068 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000052861
Gene: ENSMUSG00000049843
AA Change: V189I

Domain	Start	End	E-Value	Type
low complexity region	8	19	N/A	INTRINSIC
Pfam:7tm_4	43	320	8.1e-52	PFAM
Pfam:7TM_GPCR_Srsx	47	322	8.7e-6	PFAM
Pfam:7tm_1	53	302	3.6e-19	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000214002
AA Change: V189I

PolyPhen 2 Score 0.068 (Sensitivity: 0.94; Specificity: 0.84)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

100% (75/75)

MGI Phenotype

FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acsbg1	A	G	9: 54,535,745 (GRCm39)	I130T	possibly damaging	Het
Adam24	T	A	8: 41,133,039 (GRCm39)	L169*	probably null	Het
Als2	A	T	1: 59,246,971 (GRCm39)	I556N	probably damaging	Het
Ankrd44	A	T	1: 54,688,599 (GRCm39)	N212K		Het
Anpep	T	C	7: 79,490,736 (GRCm39)	D260G	probably benign	Het
Arhgap17	A	T	7: 122,884,581 (GRCm39)		probably null	Het
Atad2	C	T	15: 57,980,689 (GRCm39)	R383Q	probably damaging	Het
Atp11b	T	A	3: 35,874,099 (GRCm39)	M696K	probably benign	Het
Atp13a2	A	G	4: 140,726,462 (GRCm39)	T350A	probably damaging	Het
Atp8b2	T	C	3: 89,850,979 (GRCm39)	D29G	possibly damaging	Het
Baz2a	C	T	10: 127,960,326 (GRCm39)	R1514W	probably damaging	Het
Cep250	T	A	2: 155,815,375 (GRCm39)	L631*	probably null	Het
Cimip2a	G	A	2: 25,110,252 (GRCm39)	V55I	probably damaging	Het
Clec4a3	T	C	6: 122,941,251 (GRCm39)	I82T	probably benign	Het
Csmd3	T	A	15: 47,454,170 (GRCm39)	I2648F		Het
Cul5	A	G	9: 53,555,826 (GRCm39)	F247L	probably benign	Het
Dnajc24	A	T	2: 105,800,807 (GRCm39)	M101K	probably damaging	Het
Dnhd1	T	A	7: 105,344,200 (GRCm39)	V1848E	probably damaging	Het
Dspp	A	G	5: 104,321,932 (GRCm39)	T14A	probably benign	Het
Gm7298	T	G	6: 121,762,855 (GRCm39)	I1392S	probably damaging	Het
Gm9955	A	T	18: 24,842,220 (GRCm39)	S62R	unknown	Het
Gtsf1	T	G	15: 103,328,388 (GRCm39)	N130T	probably benign	Het
Heatr5a	C	A	12: 51,971,925 (GRCm39)	S755I	probably damaging	Het
Hrc	A	G	7: 44,985,685 (GRCm39)	T279A	possibly damaging	Het
Hvcn1	T	C	5: 122,371,573 (GRCm39)	W38R	probably damaging	Het
Hyal6	A	G	6: 24,734,834 (GRCm39)	S256G	probably benign	Het
Insyn2b	G	T	11: 34,352,359 (GRCm39)	V134F	probably damaging	Het
Ipo13	A	G	4: 117,761,081 (GRCm39)	S546P	possibly damaging	Het
Katnip	T	C	7: 125,465,499 (GRCm39)	V1317A	probably benign	Het
Kif24	A	G	4: 41,395,085 (GRCm39)	V730A	probably benign	Het
L3mbtl2	T	C	15: 81,555,275 (GRCm39)	V176A	probably benign	Het
Lgi1	T	C	19: 38,294,733 (GRCm39)	Y502H	probably damaging	Het
Liph	T	A	16: 21,795,078 (GRCm39)	D178V	probably damaging	Het
Maea	T	C	5: 33,515,854 (GRCm39)	V47A	probably damaging	Het
Mak16	A	C	8: 31,656,602 (GRCm39)	S42A	probably benign	Het
Mamdc4	T	C	2: 25,458,977 (GRCm39)	I269V	probably benign	Het
Mapk8ip3	A	T	17: 25,120,728 (GRCm39)	M812K	probably benign	Het
Muc4	T	A	16: 32,752,788 (GRCm38)	S889T	unknown	Het
Npy6r	A	G	18: 44,409,551 (GRCm39)	N324S	probably damaging	Het
Ntrk3	T	G	7: 78,005,895 (GRCm39)	T489P	possibly damaging	Het
Or52a5b	G	A	7: 103,417,182 (GRCm39)	Q141*	probably null	Het
Or5h19	T	A	16: 58,856,296 (GRCm39)	D268V	probably benign	Het
Otof	G	C	5: 30,540,878 (GRCm39)	T887S	possibly damaging	Het
Papola	T	C	12: 105,773,443 (GRCm39)	V154A	probably damaging	Het
Pde4dip	T	C	3: 97,622,946 (GRCm39)	H1421R	probably benign	Het
Plpp5	T	C	8: 26,210,606 (GRCm39)	S66P	probably benign	Het
Ppp6r3	T	A	19: 3,568,337 (GRCm39)	I154L	probably benign	Het
Prr18	A	C	17: 8,560,741 (GRCm39)	D299A	possibly damaging	Het
Psmb1	G	A	17: 15,697,521 (GRCm39)	S198F	possibly damaging	Het
Qars1	T	C	9: 108,392,322 (GRCm39)	V723A	possibly damaging	Het
Rab6a	A	T	7: 100,285,959 (GRCm39)	R185*	probably null	Het
Scn2a	C	T	2: 65,579,197 (GRCm39)	Q1511*	probably null	Het
Serpinb3d	T	A	1: 107,008,506 (GRCm39)	I120F	possibly damaging	Het
Serpini2	T	C	3: 75,165,455 (GRCm39)	T175A	probably damaging	Het
Skic2	T	C	17: 35,058,440 (GRCm39)	T1226A	probably benign	Het
Slc17a6	A	G	7: 51,317,259 (GRCm39)	I427V	possibly damaging	Het
Slc2a2	C	T	3: 28,773,631 (GRCm39)	A312V	possibly damaging	Het
Snx33	C	T	9: 56,833,151 (GRCm39)	R306H	probably damaging	Het
Spcs1	G	A	14: 30,722,438 (GRCm39)	S127F	possibly damaging	Het
Speg	T	C	1: 75,399,027 (GRCm39)	V2158A	possibly damaging	Het
Sptbn4	T	A	7: 27,117,481 (GRCm39)	I423F	probably damaging	Het
Synj2	T	A	17: 6,076,754 (GRCm39)	I930N	possibly damaging	Het
Tas2r140	T	A	6: 133,032,623 (GRCm39)	D45V	probably damaging	Het
Tcf3	C	A	10: 80,257,433 (GRCm39)	V11F	unknown	Het
Tead1	A	T	7: 112,441,144 (GRCm39)	Q91L	probably benign	Het
Tgm5	T	A	2: 120,916,249 (GRCm39)		probably benign	Het
Tgoln1	C	T	6: 72,593,028 (GRCm39)	G151S	probably benign	Het
Tnfrsf11a	C	A	1: 105,755,264 (GRCm39)	N445K	probably benign	Het
Ttn	G	C	2: 76,540,514 (GRCm39)	F34157L	probably benign	Het
Vmn2r91	C	A	17: 18,356,424 (GRCm39)	P697Q	probably damaging	Het
Zeb2	G	A	2: 44,887,006 (GRCm39)	L684F	probably damaging	Het
Zfp661	T	C	2: 127,419,456 (GRCm39)	D228G	probably benign	Het
Zfp738	T	C	13: 67,821,147 (GRCm39)	K77E	probably damaging	Het
Zkscan1	T	A	5: 138,099,192 (GRCm39)	D378E	probably damaging	Het
Zswim9	T	A	7: 12,993,924 (GRCm39)	D744V	possibly damaging	Het

Other mutations in Or5t17

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01371:Or5t17	APN	2	86,833,267 (GRCm39)	missense	probably benign	0.31
IGL01584:Or5t17	APN	2	86,832,495 (GRCm39)	missense	probably benign	0.04
IGL01913:Or5t17	APN	2	86,833,164 (GRCm39)	missense	possibly damaging	0.68
IGL02672:Or5t17	APN	2	86,832,417 (GRCm39)	missense	probably benign	0.00
R0003:Or5t17	UTSW	2	86,832,710 (GRCm39)	nonsense	probably null
R0003:Or5t17	UTSW	2	86,832,710 (GRCm39)	nonsense	probably null
R1674:Or5t17	UTSW	2	86,832,577 (GRCm39)	missense	probably benign	0.07
R1688:Or5t17	UTSW	2	86,832,730 (GRCm39)	missense	probably benign	0.01
R3826:Or5t17	UTSW	2	86,832,388 (GRCm39)	missense	probably damaging	0.97
R3925:Or5t17	UTSW	2	86,832,718 (GRCm39)	missense	possibly damaging	0.91
R4023:Or5t17	UTSW	2	86,833,266 (GRCm39)	nonsense	probably null
R4730:Or5t17	UTSW	2	86,832,510 (GRCm39)	missense	possibly damaging	0.48
R5154:Or5t17	UTSW	2	86,832,382 (GRCm39)	missense	probably benign	0.00
R5525:Or5t17	UTSW	2	86,832,683 (GRCm39)	missense	possibly damaging	0.95
R5685:Or5t17	UTSW	2	86,832,621 (GRCm39)	missense	probably benign	0.02
R5788:Or5t17	UTSW	2	86,832,645 (GRCm39)	missense	probably benign	0.01
R6280:Or5t17	UTSW	2	86,832,364 (GRCm39)	missense	probably damaging	0.99
R9493:Or5t17	UTSW	2	86,833,140 (GRCm39)	missense	probably benign	0.45
R9745:Or5t17	UTSW	2	86,832,487 (GRCm39)	missense	probably benign	0.28
Z1176:Or5t17	UTSW	2	86,832,955 (GRCm39)	missense	probably benign	0.00
Z1176:Or5t17	UTSW	2	86,832,954 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- CTTCCTTTTAGCAGCAATGGC -3'
(R):5'- CACATACATGAAAAGGATTGTCCC -3'

Sequencing Primer
(F):5'- GCTTATGACCGTTATTTGGCAATC -3'
(R):5'- CCTGTTAGGTGAGCTCCAC -3'

Posted On

2019-06-26