Mutagenetix > Incidental Mutation

Incidental Mutation 'R7182:Mnat1'

559067

Institutional Source

Beutler Lab

Gene Symbol

Mnat1

Ensembl Gene

ENSMUSG00000021103

Gene Name

menage a trois 1

Synonyms

E130115E11Rik, MAT1

MMRRC Submission

045234-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7182 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

73170491-73320762 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to T at 73277452 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Stop codon at position 233 (E233*)

Ref Sequence

ENSEMBL: ENSMUSP00000141036 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021523] [ENSMUST00000187549] [ENSMUST00000189644]

AlphaFold

P51949

Predicted Effect

probably benign
Transcript: ENSMUST00000021523

SMART Domains

Protein: ENSMUSP00000021523
Gene: ENSMUSG00000021103

Domain	Start	End	E-Value	Type
RING	6	49	3.24e-4	SMART
Pfam:MAT1	53	250	2.1e-67	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000187549
AA Change: E233*

SMART Domains

Protein: ENSMUSP00000141036
Gene: ENSMUSG00000021103
AA Change: E233*

Domain	Start	End	E-Value	Type
RING	6	49	1.6e-6	SMART
Pfam:MAT1	53	238	1.7e-74	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000189644

SMART Domains

Protein: ENSMUSP00000141146
Gene: ENSMUSG00000021103

Domain	Start	End	E-Value	Type
RING	6	49	1.6e-6	SMART
Pfam:MAT1	53	90	4.2e-14	PFAM

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

96% (70/73)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene, along with cyclin H and CDK7, forms the CDK-activating kinase (CAK) enzymatic complex. This complex activates several cyclin-associated kinases and can also associate with TFIIH to activate transcription by RNA polymerase II. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2011]
PHENOTYPE: Mice homozygous for disruption of this gene die as embryos at some point between implantation and gastrulation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4930562C15Rik	T	C	16: 4,667,578 (GRCm39)	V323A	unknown	Het
AC117241.1	A	G	17: 7,620,087 (GRCm39)	V158A	unknown	Het
Acadm	A	G	3: 153,647,518 (GRCm39)		probably null	Het
Adcy10	T	G	1: 165,371,039 (GRCm39)		probably null	Het
Aldh6a1	C	T	12: 84,488,605 (GRCm39)	A94T	probably benign	Het
Ano2	T	A	6: 125,767,256 (GRCm39)	L229Q	probably damaging	Het
Cacna1h	C	T	17: 25,596,629 (GRCm39)	R1828H	probably damaging	Het
Ccdc33	A	T	9: 57,941,456 (GRCm39)		probably null	Het
Cep112	A	C	11: 108,573,670 (GRCm39)	D6A	probably benign	Het
Chd9	T	C	8: 91,733,250 (GRCm39)	F1373S	unknown	Het
Cog5	T	C	12: 31,735,707 (GRCm39)	L158P	probably damaging	Het
Col6a3	G	A	1: 90,731,400 (GRCm39)	Q1618*	probably null	Het
Dlg5	A	G	14: 24,294,924 (GRCm39)	V3A		Het
Dnah7a	T	A	1: 53,659,620 (GRCm39)		probably null	Het
Dpp10	A	T	1: 123,268,880 (GRCm39)	H716Q	probably benign	Het
Epor	A	G	9: 21,874,625 (GRCm39)	F35L	probably benign	Het
Ergic1	A	T	17: 26,873,856 (GRCm39)	Y92F		Het
Fam98a	G	A	17: 75,846,013 (GRCm39)	Q273*	probably null	Het
Fhdc1	G	A	3: 84,356,157 (GRCm39)	T429I	probably damaging	Het
Fmnl2	T	A	2: 52,997,453 (GRCm39)	L468Q	unknown	Het
Fmnl3	C	T	15: 99,219,663 (GRCm39)	R695Q	probably damaging	Het
Gabrg2	T	C	11: 41,811,333 (GRCm39)	M271V	probably damaging	Het
Garin4	C	T	1: 190,895,548 (GRCm39)	R365H	probably damaging	Het
Gk5	G	T	9: 96,001,579 (GRCm39)	V26L	possibly damaging	Het
Gm14412	A	C	2: 177,007,408 (GRCm39)	N162K	probably benign	Het
Gm3604	T	C	13: 62,519,689 (GRCm39)	D22G	probably damaging	Het
Gm5565	G	T	5: 146,094,865 (GRCm39)	H294N	probably benign	Het
Hsf2	T	A	10: 57,381,272 (GRCm39)	D287E	possibly damaging	Het
Ift70b	A	T	2: 75,768,293 (GRCm39)	Y153*	probably null	Het
Impdh2	G	A	9: 108,440,407 (GRCm39)	R231H	possibly damaging	Het
Irak3	T	C	10: 120,002,416 (GRCm39)	H234R	probably damaging	Het
Lrba	GTTCCCTTC	GTTC	3: 86,648,765 (GRCm39)		probably null	Het
Lrch3	T	A	16: 32,814,149 (GRCm39)	D551E	probably benign	Het
Manba	A	T	3: 135,273,274 (GRCm39)	N736I	probably benign	Het
Map2	A	G	1: 66,451,812 (GRCm39)	D234G	possibly damaging	Het
Mdk	C	A	2: 91,761,197 (GRCm39)	K121N	unknown	Het
Mfn1	T	A	3: 32,618,369 (GRCm39)	L526Q	probably damaging	Het
Mfsd2b	A	G	12: 4,916,157 (GRCm39)		probably null	Het
Mtmr4	T	C	11: 87,495,431 (GRCm39)		probably null	Het
Mtrf1	A	G	14: 79,660,904 (GRCm39)	E432G	possibly damaging	Het
Muc5b	C	T	7: 141,396,382 (GRCm39)	R165C	unknown	Het
Naip6	T	A	13: 100,452,657 (GRCm39)	I135F	probably benign	Het
Nod2	A	G	8: 89,390,460 (GRCm39)	T256A	probably benign	Het
Notch4	T	A	17: 34,802,473 (GRCm39)	V1298E	probably damaging	Het
Nudc	G	T	4: 133,261,776 (GRCm39)	D169E	possibly damaging	Het
Obscn	A	T	11: 58,925,927 (GRCm39)	I5602N	probably damaging	Het
Or5b114-ps1	G	A	19: 13,353,208 (GRCm39)	G294E	unknown	Het
Osbpl10	G	A	9: 114,896,319 (GRCm39)	D18N	probably damaging	Het
Pigk	G	A	3: 152,428,188 (GRCm39)	V72I	possibly damaging	Het
Prl8a6	C	T	13: 27,621,153 (GRCm39)	E26K	probably damaging	Het
Prpf8	A	G	11: 75,381,553 (GRCm39)	Y318C	possibly damaging	Het
Rab13	A	G	3: 90,132,070 (GRCm39)	D159G	possibly damaging	Het
Rgl2	T	C	17: 34,153,964 (GRCm39)	F457L	possibly damaging	Het
Ryr2	T	C	13: 11,774,643 (GRCm39)	H1171R	probably benign	Het
Scn4a	T	A	11: 106,221,134 (GRCm39)	I842F	probably benign	Het
Scnm1	A	T	3: 95,041,165 (GRCm39)	N14K	possibly damaging	Het
Serinc1	A	T	10: 57,400,457 (GRCm39)	I137N	probably benign	Het
Slc30a3	T	C	5: 31,244,169 (GRCm39)	Q371R	probably benign	Het
Slc30a3	A	C	5: 31,247,014 (GRCm39)	M103R	probably damaging	Het
Slco1a1	A	T	6: 141,857,565 (GRCm39)	C589S	probably damaging	Het
Slco1b2	A	G	6: 141,602,656 (GRCm39)	Y203C	probably damaging	Het
Spty2d1	A	T	7: 46,648,271 (GRCm39)	D219E	probably benign	Het
Svep1	A	T	4: 58,043,991 (GRCm39)	S3552T	probably benign	Het
Tmem62	A	G	2: 120,835,224 (GRCm39)	I516M	probably benign	Het
Trim61	A	T	8: 65,466,266 (GRCm39)	S332T	probably damaging	Het
Trmt10b	A	C	4: 45,308,520 (GRCm39)	T227P	probably benign	Het
Trpc3	T	C	3: 36,709,258 (GRCm39)	Q406R	probably benign	Het
Ush2a	A	T	1: 188,485,740 (GRCm39)	Y2950F	probably benign	Het
Usp32	C	T	11: 84,930,996 (GRCm39)	G478D	probably benign	Het
Wdfy3	A	G	5: 102,091,758 (GRCm39)	L527P	possibly damaging	Het
Wdr73	A	G	7: 80,543,426 (GRCm39)	V163A	possibly damaging	Het

Other mutations in Mnat1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01907:Mnat1	APN	12	73,319,213 (GRCm39)	missense	probably benign	0.01
IGL01959:Mnat1	APN	12	73,228,705 (GRCm39)	splice site	probably benign
IGL02491:Mnat1	APN	12	73,170,682 (GRCm39)	missense	probably null	0.83
IGL02876:Mnat1	APN	12	73,217,378 (GRCm39)	missense	probably damaging	0.98
R0312:Mnat1	UTSW	12	73,228,558 (GRCm39)	missense	possibly damaging	0.92
R0488:Mnat1	UTSW	12	73,217,413 (GRCm39)	missense	probably damaging	1.00
R0709:Mnat1	UTSW	12	73,234,962 (GRCm39)	missense	possibly damaging	0.92
R0846:Mnat1	UTSW	12	73,170,706 (GRCm39)	splice site	probably null
R1080:Mnat1	UTSW	12	73,319,292 (GRCm39)	missense	probably damaging	0.98
R1803:Mnat1	UTSW	12	73,226,007 (GRCm39)	nonsense	probably null
R2338:Mnat1	UTSW	12	73,265,917 (GRCm39)	critical splice donor site	probably null
R2516:Mnat1	UTSW	12	73,228,550 (GRCm39)	splice site	probably benign
R4414:Mnat1	UTSW	12	73,228,601 (GRCm39)	missense	probably damaging	0.99
R4957:Mnat1	UTSW	12	73,170,652 (GRCm39)	missense	probably damaging	1.00
R6323:Mnat1	UTSW	12	73,214,878 (GRCm39)	missense	probably damaging	1.00
R6738:Mnat1	UTSW	12	73,319,246 (GRCm39)	missense	probably benign	0.00
R6769:Mnat1	UTSW	12	73,319,196 (GRCm39)	missense	probably benign	0.00
R7002:Mnat1	UTSW	12	73,277,479 (GRCm39)	intron	probably benign
R7887:Mnat1	UTSW	12	73,234,965 (GRCm39)	missense	probably benign	0.45
R8118:Mnat1	UTSW	12	73,265,864 (GRCm39)	missense	probably benign
R9311:Mnat1	UTSW	12	73,214,916 (GRCm39)	missense	probably benign	0.04

Predicted Primers

PCR Primer
(F):5'- TCCCAGAGTGATTACATTAGAGC -3'
(R):5'- TGGTATGCCTCATGAACATGTATAC -3'

Sequencing Primer
(F):5'- GATTACATTAGAGCAGCTTTGGAG -3'
(R):5'- GCCTCATGAACATGTATACTCTGAC -3'

Posted On

2019-06-26