Mutagenetix > Incidental Mutation

Incidental Mutation 'R7204:Glmp'

560425

Institutional Source

Beutler Lab

Gene Symbol

Glmp

Ensembl Gene

ENSMUSG00000001418

Gene Name

glycosylated lysosomal membrane protein

Synonyms

0610031J06Rik, NCU-G1

MMRRC Submission

045282-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7204 (G1)

Quality Score

176.009

Status

Validated

Chromosome

Chromosomal Location

88232330-88235938 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 88233917 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Cysteine at position 258 (Y258C)

Ref Sequence

ENSEMBL: ENSMUSP00000135398 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001452] [ENSMUST00000001454] [ENSMUST00000001456] [ENSMUST00000107552] [ENSMUST00000107553] [ENSMUST00000131666] [ENSMUST00000154381] [ENSMUST00000177005] [ENSMUST00000164166] [ENSMUST00000176425] [ENSMUST00000176519]

AlphaFold

Q9JHJ3

Predicted Effect

probably benign
Transcript: ENSMUST00000001452

SMART Domains

Protein: ENSMUSP00000001452
Gene: ENSMUSG00000001416

Domain	Start	End	E-Value	Type
Pfam:Cpn60_TCP1	33	527	3.2e-171	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000001454
AA Change: Y192C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000001454
Gene: ENSMUSG00000001418
AA Change: Y192C

Domain	Start	End	E-Value	Type
signal peptide	1	35	N/A	INTRINSIC
Pfam:NCU-G1	53	130	2.7e-26	PFAM
Pfam:NCU-G1	124	333	4.8e-77	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000001456

SMART Domains

Protein: ENSMUSP00000001456
Gene: ENSMUSG00000001420

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
low complexity region	79	89	N/A	INTRINSIC
low complexity region	177	192	N/A	INTRINSIC
transmembrane domain	197	219	N/A	INTRINSIC
transmembrane domain	234	256	N/A	INTRINSIC
transmembrane domain	280	302	N/A	INTRINSIC
transmembrane domain	312	330	N/A	INTRINSIC
transmembrane domain	337	359	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107552

SMART Domains

Protein: ENSMUSP00000103176
Gene: ENSMUSG00000001420

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
low complexity region	79	89	N/A	INTRINSIC
low complexity region	177	192	N/A	INTRINSIC
transmembrane domain	197	219	N/A	INTRINSIC
transmembrane domain	234	256	N/A	INTRINSIC
transmembrane domain	280	302	N/A	INTRINSIC
transmembrane domain	312	330	N/A	INTRINSIC
transmembrane domain	337	359	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000107553

SMART Domains

Protein: ENSMUSP00000103177
Gene: ENSMUSG00000001420

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
low complexity region	79	89	N/A	INTRINSIC
low complexity region	177	192	N/A	INTRINSIC
transmembrane domain	197	219	N/A	INTRINSIC
transmembrane domain	234	256	N/A	INTRINSIC
transmembrane domain	280	302	N/A	INTRINSIC
transmembrane domain	312	330	N/A	INTRINSIC
transmembrane domain	337	359	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000131666

SMART Domains

Protein: ENSMUSP00000120235
Gene: ENSMUSG00000001418

Domain	Start	End	E-Value	Type
signal peptide	1	35	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000154381

SMART Domains

Protein: ENSMUSP00000134809
Gene: ENSMUSG00000001418

Domain	Start	End	E-Value	Type
Pfam:NCU-G1	2	72	5.4e-18	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000177005
AA Change: Y258C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000135398
Gene: ENSMUSG00000001418
AA Change: Y258C

Domain	Start	End	E-Value	Type
signal peptide	1	35	N/A	INTRINSIC
Pfam:NCU-G1	54	397	1.1e-104	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000164166

SMART Domains

Protein: ENSMUSP00000126109
Gene: ENSMUSG00000001416

Domain	Start	End	E-Value	Type
Pfam:Cpn60_TCP1	15	489	1.7e-144	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000168971

SMART Domains

Protein: ENSMUSP00000131250
Gene: ENSMUSG00000001416

Domain	Start	End	E-Value	Type
Pfam:Cpn60_TCP1	1	38	5.6e-8	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000176425
AA Change: Y173C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000135575
Gene: ENSMUSG00000001418
AA Change: Y173C

Domain	Start	End	E-Value	Type
signal peptide	1	35	N/A	INTRINSIC
Pfam:NCU-G1	37	314	3.3e-94	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000176519

SMART Domains

Protein: ENSMUSP00000135263
Gene: ENSMUSG00000001418

Domain	Start	End	E-Value	Type
signal peptide	1	35	N/A	INTRINSIC
Pfam:NCU-G1	53	125	4.7e-26	PFAM

Meta Mutation Damage Score

0.7920

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.6%

Validation Efficiency

99% (75/76)

MGI Phenotype

PHENOTYPE: Homozygous mutants for this allele displayed spontaneous development of liver fibrosis at 6 months and various hepatic cell phenotypes. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 75 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700067K01Rik	T	C	8: 84,730,636 (GRCm39)	S227P	probably damaging	Het
Acot6	A	G	12: 84,153,301 (GRCm39)	H181R	probably benign	Het
Adam15	A	T	3: 89,254,244 (GRCm39)	H184Q	probably benign	Het
Agl	A	G	3: 116,587,469 (GRCm39)	F29L	probably benign	Het
Ak7	A	G	12: 105,708,502 (GRCm39)	Y319C	probably benign	Het
Ano8	C	A	8: 71,931,669 (GRCm39)	V813L	probably benign	Het
Apbb2	T	G	5: 66,608,946 (GRCm39)	K234Q	probably damaging	Het
Arfgef3	A	T	10: 18,522,210 (GRCm39)	D605E	probably damaging	Het
Bfsp2	C	A	9: 103,309,865 (GRCm39)	R340L	probably damaging	Het
Birc6	C	A	17: 74,947,103 (GRCm39)	P2956T	probably damaging	Het
C1rb	T	C	6: 124,554,386 (GRCm39)	I389T	probably benign	Het
Ccdc146	A	G	5: 21,513,624 (GRCm39)	F498S	probably benign	Het
Cdc14b	A	C	13: 64,358,012 (GRCm39)	V361G	possibly damaging	Het
Cdc25b	A	T	2: 131,033,552 (GRCm39)	I164F	probably damaging	Het
Col18a1	A	G	10: 76,921,110 (GRCm39)	S297P	unknown	Het
Col3a1	A	T	1: 45,361,578 (GRCm39)	I117F	unknown	Het
Cox4i2	AG	A	2: 152,602,618 (GRCm39)		probably null	Het
Crybg3	C	A	16: 59,379,253 (GRCm39)	G667V	probably benign	Het
Ctc1	A	G	11: 68,920,567 (GRCm39)	D623G	probably damaging	Het
Dennd1a	A	T	2: 37,929,215 (GRCm39)	H152Q	probably damaging	Het
Dgke	G	A	11: 88,932,306 (GRCm39)	P495S	probably damaging	Het
Dll3	A	T	7: 27,998,330 (GRCm39)	C212S	possibly damaging	Het
Dll4	A	T	2: 119,159,054 (GRCm39)	S235C	probably damaging	Het
Dnah12	G	A	14: 26,500,869 (GRCm39)		probably null	Het
Dnah12	A	T	14: 26,503,442 (GRCm39)	T1599S	probably damaging	Het
Elavl1	G	A	8: 4,361,712 (GRCm39)	T20M	probably damaging	Het
Epha3	T	C	16: 63,472,695 (GRCm39)	T397A	probably benign	Het
Fanca	A	T	8: 124,013,216 (GRCm39)	I859N	probably damaging	Het
Fzd1	A	T	5: 4,805,980 (GRCm39)	V534D	probably damaging	Het
Gm9195	G	A	14: 72,711,626 (GRCm39)	P329S	probably damaging	Het
Gpt	A	G	15: 76,583,199 (GRCm39)	R379G	probably benign	Het
Gsdmc2	T	C	15: 63,696,903 (GRCm39)	T423A	probably damaging	Het
Hemgn	T	C	4: 46,397,054 (GRCm39)	K61E	possibly damaging	Het
Ikzf4	A	T	10: 128,479,759 (GRCm39)	S56T	possibly damaging	Het
Jak1	T	C	4: 101,032,332 (GRCm39)	T425A	probably benign	Het
Jsrp1	T	C	10: 80,646,319 (GRCm39)	T80A	probably benign	Het
Klra9	T	A	6: 130,165,643 (GRCm39)	D124V	possibly damaging	Het
Lama5	A	T	2: 179,843,970 (GRCm39)	V397D	probably damaging	Het
Lrp2	A	G	2: 69,302,877 (GRCm39)	S2951P	probably benign	Het
Map7d1	A	G	4: 126,149,808 (GRCm39)		probably null	Het
Mcm6	A	T	1: 128,265,864 (GRCm39)	C636S	probably damaging	Het
Mia	T	C	7: 26,880,358 (GRCm39)	E39G	possibly damaging	Het
Mpeg1	T	A	19: 12,440,258 (GRCm39)	I572N	probably damaging	Het
Muc21	AGCTGGATGCAGTGGTGGTCAGGGTGGGTGTAGAGCCTGAGCCAGTGCTGGATACAGTGGTGGTC	AGCTGGATACAGTGGTGGTC	17: 35,932,105 (GRCm39)		probably benign	Het
Muc6	AGGCGCAGAAACCCTGGC	AGGC	7: 141,214,363 (GRCm39)		probably null	Het
Mup5	A	G	4: 61,751,992 (GRCm39)	Y86H	probably damaging	Het
Nckap5	A	T	1: 125,954,104 (GRCm39)	V816D	probably benign	Het
Nfib	T	C	4: 82,215,052 (GRCm39)		probably null	Het
Nlrc5	T	A	8: 95,218,153 (GRCm39)	V1056D	possibly damaging	Het
Nynrin	G	C	14: 56,110,190 (GRCm39)	E1766Q	probably damaging	Het
Or7d9	A	T	9: 20,197,100 (GRCm39)	Y43F	probably benign	Het
Oxct1	T	A	15: 4,123,524 (GRCm39)	L328Q	probably damaging	Het
Pax5	T	A	4: 44,679,485 (GRCm39)	I187F	possibly damaging	Het
Pcdhb4	A	T	18: 37,442,292 (GRCm39)	D534V	probably damaging	Het
Pebp4	C	T	14: 70,085,046 (GRCm39)	P35S	probably benign	Het
Pkhd1l1	T	A	15: 44,386,949 (GRCm39)	V1274E	possibly damaging	Het
Plcz1	A	T	6: 139,956,150 (GRCm39)	V373D	probably benign	Het
Plxnb1	C	T	9: 108,929,243 (GRCm39)	T33I	probably damaging	Het
Prag1	T	C	8: 36,613,915 (GRCm39)	C1156R	probably benign	Het
Ptprc	T	A	1: 138,045,600 (GRCm39)	I87F	probably benign	Het
Rbp4	G	A	19: 38,112,551 (GRCm39)	T138I	possibly damaging	Het
Semp2l2b	A	G	10: 21,943,785 (GRCm39)	L65P	probably damaging	Het
Slc12a1	A	T	2: 125,042,542 (GRCm39)	N733Y	possibly damaging	Het
Slc27a3	A	G	3: 90,297,033 (GRCm39)	V22A	probably benign	Het
Tcaf1	T	C	6: 42,651,973 (GRCm39)		probably null	Het
Tnc	T	C	4: 63,889,392 (GRCm39)		probably null	Het
Tspan31	A	T	10: 126,903,987 (GRCm39)	*211R	probably null	Het
Ttc17	A	T	2: 94,192,773 (GRCm39)	V86D	possibly damaging	Het
Ubr1	T	A	2: 120,734,558 (GRCm39)	N1114I	possibly damaging	Het
Ulk2	C	T	11: 61,674,457 (GRCm39)	G850R	probably benign	Het
Vmn1r13	T	A	6: 57,187,141 (GRCm39)	I100N	probably benign	Het
Zan	T	C	5: 137,426,240 (GRCm39)	D2512G	unknown	Het
Zc3h14	A	T	12: 98,737,615 (GRCm39)	N34I	probably damaging	Het
Zcwpw1	T	G	5: 137,810,346 (GRCm39)	L374R	probably damaging	Het
Zfp747l1	A	T	7: 126,983,518 (GRCm39)	I528K	possibly damaging	Het

Other mutations in Glmp

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00484:Glmp	APN	3	88,233,169 (GRCm39)	splice site	probably null
IGL02551:Glmp	APN	3	88,232,389 (GRCm39)	start codon destroyed	probably null	0.53
IGL03212:Glmp	APN	3	88,235,664 (GRCm39)	missense	probably benign	0.01
R0325:Glmp	UTSW	3	88,232,391 (GRCm39)	start codon destroyed	probably null	0.72
R0719:Glmp	UTSW	3	88,233,452 (GRCm39)	nonsense	probably null
R0721:Glmp	UTSW	3	88,233,452 (GRCm39)	nonsense	probably null
R1617:Glmp	UTSW	3	88,235,426 (GRCm39)	splice site	probably benign
R1970:Glmp	UTSW	3	88,235,177 (GRCm39)	missense	probably damaging	1.00
R3824:Glmp	UTSW	3	88,233,718 (GRCm39)	missense	probably damaging	1.00
R3825:Glmp	UTSW	3	88,233,718 (GRCm39)	missense	probably damaging	1.00
R4521:Glmp	UTSW	3	88,235,346 (GRCm39)	missense	possibly damaging	0.60
R4697:Glmp	UTSW	3	88,235,581 (GRCm39)	missense	probably damaging	0.99
R4806:Glmp	UTSW	3	88,233,320 (GRCm39)	intron	probably benign
R4823:Glmp	UTSW	3	88,232,530 (GRCm39)	intron	probably benign
R5035:Glmp	UTSW	3	88,233,951 (GRCm39)	splice site	probably benign
R5043:Glmp	UTSW	3	88,233,983 (GRCm39)	intron	probably benign
R5335:Glmp	UTSW	3	88,233,962 (GRCm39)	intron	probably benign
R5592:Glmp	UTSW	3	88,233,333 (GRCm39)	intron	probably benign
R5738:Glmp	UTSW	3	88,233,445 (GRCm39)	missense	probably benign	0.06
R5921:Glmp	UTSW	3	88,233,283 (GRCm39)	missense	probably benign	0.09
R6046:Glmp	UTSW	3	88,232,495 (GRCm39)	missense	probably damaging	0.96
R6103:Glmp	UTSW	3	88,235,338 (GRCm39)	missense	probably benign	0.02
R6859:Glmp	UTSW	3	88,235,349 (GRCm39)	missense	probably benign	0.30
R6943:Glmp	UTSW	3	88,233,917 (GRCm39)	missense	probably damaging	1.00
R6945:Glmp	UTSW	3	88,233,139 (GRCm39)	missense	probably benign	0.02
R7770:Glmp	UTSW	3	88,233,077 (GRCm39)	missense	probably benign	0.39
R8022:Glmp	UTSW	3	88,233,827 (GRCm39)	missense	probably damaging	1.00
R8079:Glmp	UTSW	3	88,233,045 (GRCm39)	missense	probably damaging	0.98
R8296:Glmp	UTSW	3	88,233,580 (GRCm39)	missense	probably benign	0.16
R8986:Glmp	UTSW	3	88,233,002 (GRCm39)	missense	probably benign	0.28
R9266:Glmp	UTSW	3	88,233,036 (GRCm39)	missense	probably damaging	0.98
R9335:Glmp	UTSW	3	88,235,563 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- TTTTCTAGATCTGGTCGACCTG -3'
(R):5'- CAACTGACTGTAGCTCTAGTTCC -3'

Sequencing Primer
(F):5'- TAGATCTGGTCGACCTGCTCAG -3'
(R):5'- GGATTTGGCACCTTCACAGAC -3'

Posted On

2019-06-26