Mutagenetix > Incidental Mutation

Incidental Mutation 'R7206:Vps35'

560625

Institutional Source

Beutler Lab

Gene Symbol

Vps35

Ensembl Gene

ENSMUSG00000031696

Gene Name

VPS35 retromer complex component

Synonyms

Mem3

MMRRC Submission

045284-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7206 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

85987014-86026146 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 86014350 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Asparagine at position 100 (Y100N)

Ref Sequence

ENSEMBL: ENSMUSP00000034131 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034131]

AlphaFold

Q9EQH3

Predicted Effect

probably damaging
Transcript: ENSMUST00000034131
AA Change: Y100N

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000034131
Gene: ENSMUSG00000031696
AA Change: Y100N

Domain	Start	End	E-Value	Type
Pfam:Vps35	15	753	6.8e-303	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 98.9%

Validation Efficiency

99% (87/88)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to a group of vacuolar protein sorting (VPS) genes. The encoded protein is a component of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. The close structural similarity between the yeast and human proteins that make up this complex suggests a similarity in function. Expression studies in yeast and mammalian cells indicate that this protein interacts directly with VPS35, which serves as the core of the retromer complex. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a gene trap allele die prior to E10. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 87 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aadacl2	G	A	3: 59,932,662 (GRCm39)	M392I	probably benign	Het
Aadacl4fm2	T	A	4: 144,285,211 (GRCm39)	D142V	probably damaging	Het
Acr	T	C	15: 89,458,374 (GRCm39)	S352P	probably benign	Het
Adam6a	T	C	12: 113,509,654 (GRCm39)	C676R	probably damaging	Het
Adgra3	T	C	5: 50,164,238 (GRCm39)	D247G	probably damaging	Het
Agxt2	A	T	15: 10,377,542 (GRCm39)	E147D	probably damaging	Het
Atp2a1	T	C	7: 126,047,144 (GRCm39)	T805A	probably benign	Het
Atp8b4	T	C	2: 126,300,212 (GRCm39)	S106G	probably damaging	Het
Ccdc170	T	A	10: 4,464,120 (GRCm39)	M87K	possibly damaging	Het
Ccnl2	T	G	4: 155,905,431 (GRCm39)	V287G	possibly damaging	Het
Ccr6	A	T	17: 8,475,781 (GRCm39)	M329L	probably benign	Het
Cflar	G	T	1: 58,780,150 (GRCm39)	M248I		Het
Cib4	A	T	5: 30,703,110 (GRCm39)	L5*	probably null	Het
Col27a1	A	T	4: 63,153,583 (GRCm39)	Y645F	probably benign	Het
Cxcr2	A	G	1: 74,198,213 (GRCm39)	T236A	possibly damaging	Het
Dnah12	G	A	14: 26,500,869 (GRCm39)		probably null	Het
Dnah7a	A	T	1: 53,737,792 (GRCm39)	L47*	probably null	Het
Dnajb6	A	C	5: 29,986,335 (GRCm39)	K301T	possibly damaging	Het
Dpf2	T	A	19: 5,954,571 (GRCm39)	I157F	possibly damaging	Het
Drd4	G	A	7: 140,872,032 (GRCm39)	G28R	probably damaging	Het
Dus3l	A	T	17: 57,074,807 (GRCm39)	I310F	probably damaging	Het
Dusp29	A	G	14: 21,727,102 (GRCm39)	V182A	probably damaging	Het
Eef1akmt3	A	G	10: 126,876,862 (GRCm39)	L95P	probably damaging	Het
Fabp7	C	T	10: 57,661,087 (GRCm39)		probably benign	Het
Fam135a	T	C	1: 24,069,354 (GRCm39)	N505S	probably benign	Het
Fam216b	C	A	14: 78,322,567 (GRCm39)	D46Y	probably damaging	Het
Gata6	C	T	18: 11,054,850 (GRCm39)	R260C	probably damaging	Het
Gm10800	A	AC	2: 98,497,378 (GRCm39)		probably null	Het
Golgb1	A	G	16: 36,734,111 (GRCm39)	I1160M	probably benign	Het
Hjv	A	T	3: 96,435,444 (GRCm39)	D234V	probably damaging	Het
Kiss1	A	G	1: 133,255,063 (GRCm39)	K26E	probably benign	Het
Knl1	T	A	2: 118,899,780 (GRCm39)	F494I	probably benign	Het
Ktn1	T	C	14: 47,932,985 (GRCm39)	L713S	probably damaging	Het
Loxhd1	A	G	18: 77,529,513 (GRCm39)	D2052G	probably damaging	Het
Lpo	A	C	11: 87,698,249 (GRCm39)	L582R	probably damaging	Het
Map2k3	A	G	11: 60,834,406 (GRCm39)	T125A		Het
Matn3	T	A	12: 9,011,170 (GRCm39)	N360K	probably benign	Het
Mlip	A	T	9: 77,072,144 (GRCm39)	V237E	probably damaging	Het
Mms22l	T	C	4: 24,591,146 (GRCm39)	V999A	probably benign	Het
Mn1	A	G	5: 111,568,378 (GRCm39)	K783E	possibly damaging	Het
Myo1h	A	T	5: 114,457,836 (GRCm39)	K132*	probably null	Het
Nle1	A	G	11: 82,795,757 (GRCm39)	V230A	probably benign	Het
Or1ak2	T	A	2: 36,827,784 (GRCm39)	Y218N	probably damaging	Het
Or1e1b-ps1	A	T	11: 73,845,647 (GRCm39)	I44F	probably benign	Het
Or4a68	T	C	2: 89,270,801 (GRCm39)		probably benign	Het
Or4f62	T	G	2: 111,986,804 (GRCm39)	C169W	probably damaging	Het
Or51f23	T	C	7: 102,452,891 (GRCm39)	S69P	probably damaging	Het
Or7e169	C	T	9: 19,757,856 (GRCm39)	D20N	probably damaging	Het
Ormdl2	T	A	10: 128,656,284 (GRCm39)	H7L	possibly damaging	Het
Pam	A	G	1: 97,823,757 (GRCm39)	S225P	probably damaging	Het
Pan2	C	A	10: 128,150,414 (GRCm39)	Y719*	probably null	Het
Ppfia4	T	C	1: 134,255,127 (GRCm39)	S243G	probably benign	Het
Ppig	T	G	2: 69,571,910 (GRCm39)	S210A	unknown	Het
Ppwd1	A	T	13: 104,350,106 (GRCm39)	N426K	probably damaging	Het
Prxl2a	T	A	14: 40,726,142 (GRCm39)	M12L	probably benign	Het
Rnf10	T	G	5: 115,382,180 (GRCm39)	D675A	probably benign	Het
Rrp12	A	T	19: 41,866,478 (GRCm39)	L619H	probably damaging	Het
Rsph10b	C	T	5: 143,898,010 (GRCm39)	T497I	possibly damaging	Het
Scnm1	A	T	3: 95,041,205 (GRCm39)	M1K	probably null	Het
Scp2	G	T	4: 107,931,638 (GRCm39)	D332E	probably benign	Het
Senp3	T	C	11: 69,569,557 (GRCm39)	I314V	probably benign	Het
Sfmbt1	T	A	14: 30,533,330 (GRCm39)		probably null	Het
Slc44a2	T	C	9: 21,258,103 (GRCm39)	F451S	probably damaging	Het
Slfn1	A	T	11: 83,012,837 (GRCm39)	M318L	probably benign	Het
Syne2	C	T	12: 76,051,531 (GRCm39)	S4087L	probably benign	Het
Syt7	A	G	19: 10,395,337 (GRCm39)	Y49C	probably damaging	Het
Tas2r134	T	C	2: 51,518,120 (GRCm39)	Y200H	probably benign	Het
Tgfbr1	A	T	4: 47,402,941 (GRCm39)	H315L	probably damaging	Het
Tmem184c	A	G	8: 78,323,206 (GRCm39)	V552A	possibly damaging	Het
Tnxb	A	G	17: 34,923,075 (GRCm39)	R2553G	possibly damaging	Het
Tomm40	C	G	7: 19,444,861 (GRCm39)	R173S	probably benign	Het
Tonsl	T	C	15: 76,517,851 (GRCm39)	D650G	probably damaging	Het
Tpo	G	C	12: 30,153,133 (GRCm39)	S407W	possibly damaging	Het
Trank1	T	C	9: 111,174,583 (GRCm39)		probably null	Het
Trp53tg5	T	C	2: 164,313,378 (GRCm39)	E99G	probably damaging	Het
Tubb2a	C	A	13: 34,259,505 (GRCm39)	S95I	possibly damaging	Het
Vav2	C	A	2: 27,226,731 (GRCm39)	R114L	probably benign	Het
Vmn1r172	A	T	7: 23,359,582 (GRCm39)	I156L	possibly damaging	Het
Vmn1r238	A	G	18: 3,122,623 (GRCm39)	Y264H	possibly damaging	Het
Vmn2r26	T	A	6: 124,016,727 (GRCm39)	M397K	probably benign	Het
Vmn2r73	T	C	7: 85,522,075 (GRCm39)	N88S	probably benign	Het
Vps13a	T	C	19: 16,731,662 (GRCm39)	N150S	probably damaging	Het
Vps8	A	C	16: 21,276,171 (GRCm39)	I235L	probably damaging	Het
Yipf2	T	A	9: 21,501,657 (GRCm39)	H157L	probably damaging	Het
Zfp354a	A	T	11: 50,961,073 (GRCm39)	H426L	probably damaging	Het
Zfp503	G	T	14: 22,035,553 (GRCm39)	S454R	possibly damaging	Het
Zfp619	C	T	7: 39,184,824 (GRCm39)	R285C	probably benign	Het

Other mutations in Vps35

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01745:Vps35	APN	8	86,000,092 (GRCm39)	splice site	probably benign
IGL02604:Vps35	APN	8	86,013,018 (GRCm39)	missense	probably damaging	1.00
IGL03278:Vps35	APN	8	86,021,590 (GRCm39)	unclassified	probably benign
IGL03326:Vps35	APN	8	86,001,526 (GRCm39)	nonsense	probably null
PIT4151001:Vps35	UTSW	8	86,010,677 (GRCm39)	missense	possibly damaging	0.95
R0118:Vps35	UTSW	8	86,021,582 (GRCm39)	missense	probably benign	0.04
R0226:Vps35	UTSW	8	86,000,204 (GRCm39)	missense	probably damaging	0.97
R1079:Vps35	UTSW	8	86,005,683 (GRCm39)	missense	probably damaging	1.00
R1477:Vps35	UTSW	8	86,014,429 (GRCm39)	missense	probably damaging	1.00
R1969:Vps35	UTSW	8	86,005,623 (GRCm39)	missense	possibly damaging	0.90
R2082:Vps35	UTSW	8	85,990,094 (GRCm39)	missense	possibly damaging	0.95
R2156:Vps35	UTSW	8	86,013,129 (GRCm39)	missense	probably benign	0.06
R2341:Vps35	UTSW	8	86,001,443 (GRCm39)	splice site	probably benign
R3752:Vps35	UTSW	8	86,001,460 (GRCm39)	missense	probably benign	0.34
R4589:Vps35	UTSW	8	86,014,331 (GRCm39)	missense	probably damaging	1.00
R4745:Vps35	UTSW	8	85,987,891 (GRCm39)	missense	probably benign
R4790:Vps35	UTSW	8	86,005,486 (GRCm39)	splice site	probably null
R4827:Vps35	UTSW	8	86,000,186 (GRCm39)	missense	possibly damaging	0.94
R4953:Vps35	UTSW	8	86,008,475 (GRCm39)	missense	probably damaging	1.00
R6277:Vps35	UTSW	8	85,987,857 (GRCm39)	missense	possibly damaging	0.80
R6291:Vps35	UTSW	8	86,026,086 (GRCm39)	start codon destroyed	probably benign	0.07
R6434:Vps35	UTSW	8	86,000,124 (GRCm39)	missense	possibly damaging	0.53
R7175:Vps35	UTSW	8	85,990,189 (GRCm39)	splice site	probably null
R7309:Vps35	UTSW	8	86,001,596 (GRCm39)	missense	probably benign	0.05
R7479:Vps35	UTSW	8	85,997,434 (GRCm39)	missense	probably benign	0.17
R7547:Vps35	UTSW	8	85,989,999 (GRCm39)	missense	probably damaging	1.00
R7761:Vps35	UTSW	8	86,010,707 (GRCm39)	missense	possibly damaging	0.91
R7812:Vps35	UTSW	8	86,010,818 (GRCm39)	missense	probably benign	0.01
R8312:Vps35	UTSW	8	86,001,498 (GRCm39)	missense	possibly damaging	0.65
R8356:Vps35	UTSW	8	85,987,934 (GRCm39)	missense	possibly damaging	0.63
R8403:Vps35	UTSW	8	86,001,487 (GRCm39)	missense	probably benign
R8456:Vps35	UTSW	8	85,987,934 (GRCm39)	missense	possibly damaging	0.63
R9189:Vps35	UTSW	8	86,007,898 (GRCm39)	missense	possibly damaging	0.67
R9615:Vps35	UTSW	8	86,010,633 (GRCm39)	missense	probably benign	0.00
X0020:Vps35	UTSW	8	85,990,050 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCTTGTGGAAATTGCTACTCATTTC -3'
(R):5'- GCTTCCACTACTGAGCTAGATC -3'

Sequencing Primer
(F):5'- CAGCAATGTCTCTGCAGCTAAGTG -3'
(R):5'- TTCCACTACTGAGCTAGATCACTAG -3'

Posted On

2019-06-26