Mutagenetix > Incidental Mutation

Incidental Mutation 'R7207:Coro6'

560710

Institutional Source

Beutler Lab

Gene Symbol

Coro6

Ensembl Gene

ENSMUSG00000020836

Gene Name

coronin 6

Synonyms

clipin E

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7207 (G1)

Quality Score

145.008

Status

Not validated

Chromosome

Chromosomal Location

77353237-77361310 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 77358089 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 225 (A225T)

Ref Sequence

ENSEMBL: ENSMUSP00000021190 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000021190] [ENSMUST00000037593] [ENSMUST00000052515] [ENSMUST00000079770] [ENSMUST00000092892] [ENSMUST00000102493] [ENSMUST00000108391] [ENSMUST00000130255] [ENSMUST00000145934]

AlphaFold

Q920M5

Predicted Effect

possibly damaging
Transcript: ENSMUST00000021190
AA Change: A225T

PolyPhen 2 Score 0.456 (Sensitivity: 0.89; Specificity: 0.90)

SMART Domains

Protein: ENSMUSP00000021190
Gene: ENSMUSG00000020836
AA Change: A225T

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	257	391	1.19e-91	SMART
low complexity region	414	429	N/A	INTRINSIC
coiled coil region	430	463	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000037593

SMART Domains

Protein: ENSMUSP00000073584
Gene: ENSMUSG00000037907

Domain	Start	End	E-Value	Type
ANK	13	43	3.16e2	SMART
ANK	47	76	2.85e-5	SMART
ANK	80	109	1.17e2	SMART
Pfam:GPCR_chapero_1	163	491	5.5e-111	PFAM
UIM	503	522	1.81e-1	SMART
low complexity region	552	580	N/A	INTRINSIC
UIM	585	604	3.15e-1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000052515

SMART Domains

Protein: ENSMUSP00000056862
Gene: ENSMUSG00000020836

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	217	351	1.19e-91	SMART
low complexity region	374	389	N/A	INTRINSIC
coiled coil region	390	424	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000079770

SMART Domains

Protein: ENSMUSP00000078703
Gene: ENSMUSG00000020836

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	217	351	1.19e-91	SMART
low complexity region	374	389	N/A	INTRINSIC
coiled coil region	390	423	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000092892

SMART Domains

Protein: ENSMUSP00000090568
Gene: ENSMUSG00000037907

Domain	Start	End	E-Value	Type
ANK	13	43	3.16e2	SMART
ANK	47	76	2.85e-5	SMART
ANK	80	109	1.17e2	SMART
Pfam:GPCR_chapero_1	163	490	3.2e-110	PFAM
UIM	503	522	1.81e-1	SMART
low complexity region	673	686	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102493

SMART Domains

Protein: ENSMUSP00000099551
Gene: ENSMUSG00000020836

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	257	391	1.19e-91	SMART
low complexity region	414	429	N/A	INTRINSIC
coiled coil region	430	463	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000108391

SMART Domains

Protein: ENSMUSP00000104028
Gene: ENSMUSG00000020836

Domain	Start	End	E-Value	Type
DUF1899	4	68	7.45e-34	SMART
WD40	67	110	2.1e-7	SMART
WD40	120	160	2.07e-6	SMART
WD40	163	203	2.73e-6	SMART
DUF1900	257	391	1.19e-91	SMART
low complexity region	414	429	N/A	INTRINSIC
coiled coil region	430	463	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000130255

Predicted Effect

probably benign
Transcript: ENSMUST00000145934

SMART Domains

Protein: ENSMUSP00000119633
Gene: ENSMUSG00000037907

Domain	Start	End	E-Value	Type
Pfam:GPCR_chapero_1	2	276	9.7e-90	PFAM
UIM	288	307	1.81e-1	SMART

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2ml1	A	G	6: 128,527,734 (GRCm39)	Y1019H	probably benign	Het
Adam11	C	A	11: 102,662,883 (GRCm39)	A212D	probably benign	Het
Adamts13	C	A	2: 26,868,707 (GRCm39)	H230Q	probably damaging	Het
Adgrl3	G	A	5: 81,457,874 (GRCm39)	M1I	probably null	Het
Agap1	A	T	1: 89,770,821 (GRCm39)	H657L	possibly damaging	Het
Ano3	T	C	2: 110,611,768 (GRCm39)	D238G	probably damaging	Het
Atp8b5	A	T	4: 43,357,018 (GRCm39)	I589F	probably damaging	Het
Bmp1	C	T	14: 70,717,000 (GRCm39)	A859T	possibly damaging	Het
Cdh20	C	A	1: 104,921,702 (GRCm39)	D666E	probably damaging	Het
Cep135	T	G	5: 76,780,090 (GRCm39)	D807E	probably benign	Het
Cldn13	G	A	5: 134,943,766 (GRCm39)	H140Y	probably benign	Het
Cnksr1	G	T	4: 133,962,434 (GRCm39)	Q155K	possibly damaging	Het
Col1a1	G	A	11: 94,829,352 (GRCm39)	R121Q	unknown	Het
Ctse	C	A	1: 131,592,112 (GRCm39)	T146K	possibly damaging	Het
Dhrs7b	C	A	11: 60,746,623 (GRCm39)	Y237*	probably null	Het
Dnah3	A	G	7: 119,570,312 (GRCm39)	F2303L	probably damaging	Het
Dsg2	T	A	18: 20,734,516 (GRCm39)	D831E	probably damaging	Het
Dst	T	C	1: 34,202,418 (GRCm39)	S575P	probably damaging	Het
Epg5	T	C	18: 77,992,170 (GRCm39)	L289P	probably damaging	Het
Etl4	A	G	2: 20,714,387 (GRCm39)	N162S	probably damaging	Het
Fbf1	A	T	11: 116,040,300 (GRCm39)	Y602N	probably benign	Het
Fgd4	A	T	16: 16,302,420 (GRCm39)	M45K	probably benign	Het
Fryl	C	T	5: 73,222,438 (GRCm39)	V2048I	probably benign	Het
Gulp1	T	C	1: 44,805,292 (GRCm39)	V127A	possibly damaging	Het
H2-DMb1	T	A	17: 34,376,490 (GRCm39)	I203N	probably damaging	Het
Harbi1	T	C	2: 91,542,790 (GRCm39)	S84P	probably damaging	Het
Hrh2	T	C	13: 54,368,266 (GRCm39)	S81P	possibly damaging	Het
Iars1	T	C	13: 49,841,791 (GRCm39)		probably null	Het
Kcnma1	T	C	14: 23,359,083 (GRCm39)	*1087W	probably null	Het
Lama5	T	A	2: 179,848,877 (GRCm39)	N241I	probably damaging	Het
Lig4	T	A	8: 10,022,101 (GRCm39)	K560*	probably null	Het
Lpin3	G	T	2: 160,735,923 (GRCm39)	E68*	probably null	Het
Mrtfb	A	T	16: 13,144,300 (GRCm39)	I7L	probably benign	Het
Msrb3	A	T	10: 120,627,305 (GRCm39)		probably null	Het
Muc5b	A	G	7: 141,416,602 (GRCm39)	T3183A	probably benign	Het
Mx1	T	A	16: 97,253,398 (GRCm39)	D342V	probably benign	Het
Nrap	G	T	19: 56,333,953 (GRCm39)	T1003K	probably damaging	Het
Or8u10	A	G	2: 85,915,159 (GRCm39)	S321P	possibly damaging	Het
Plxna2	C	T	1: 194,326,327 (GRCm39)	P87L	probably damaging	Het
Pms2	C	T	5: 143,850,452 (GRCm39)	T89I	probably damaging	Het
Ppp1r12c	C	A	7: 4,492,867 (GRCm39)	R203L	probably damaging	Het
Pramel31	A	G	4: 144,088,473 (GRCm39)	T90A	probably benign	Het
Rab44	C	T	17: 29,357,013 (GRCm39)	Q48*	probably null	Het
Rgs14	T	C	13: 55,531,047 (GRCm39)	V417A	probably benign	Het
Sgms1	T	A	19: 32,120,147 (GRCm39)	K253M	probably null	Het
Sidt2	T	C	9: 45,856,449 (GRCm39)	Y492C	probably damaging	Het
Slco1a5	G	T	6: 142,194,475 (GRCm39)	Y389*	probably null	Het
Slfn14	G	A	11: 83,170,214 (GRCm39)	Q477*	probably null	Het
Sorbs3	T	C	14: 70,438,934 (GRCm39)	K142R	probably damaging	Het
Sphk1	A	T	11: 116,426,590 (GRCm39)	D182V	probably damaging	Het
Srsf9	C	G	5: 115,465,481 (GRCm39)	Y38*	probably null	Het
Stk40	A	C	4: 126,019,547 (GRCm39)	E107A	probably damaging	Het
Syngr4	T	C	7: 45,538,101 (GRCm39)	Y89C	possibly damaging	Het
Tead1	G	A	7: 112,441,287 (GRCm39)	R109H	possibly damaging	Het
Thra	A	G	11: 98,651,802 (GRCm39)	Q108R	probably damaging	Het
Tnni3k	G	A	3: 154,580,782 (GRCm39)	T621I	probably damaging	Het
Trim3	A	C	7: 105,262,583 (GRCm39)	V525G	possibly damaging	Het
Usp49	T	C	17: 47,989,802 (GRCm39)	V529A	probably benign	Het
Vill	A	T	9: 118,900,281 (GRCm39)	Q849L	possibly damaging	Het
Vps36	T	A	8: 22,701,623 (GRCm39)	S237T	probably benign	Het
Zar1l	A	T	5: 150,430,558 (GRCm39)	C284*	probably null	Het
Zfp948	T	C	17: 21,808,602 (GRCm39)	V598A	possibly damaging	Het
Zfp952	T	C	17: 33,222,489 (GRCm39)	Y323H	possibly damaging	Het

Other mutations in Coro6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00952:Coro6	APN	11	77,359,291 (GRCm39)	missense	probably damaging	1.00
IGL01086:Coro6	APN	11	77,357,374 (GRCm39)	nonsense	probably null
IGL03184:Coro6	APN	11	77,354,779 (GRCm39)	missense	probably damaging	1.00
R0365:Coro6	UTSW	11	77,354,916 (GRCm39)	missense	probably benign	0.28
R1712:Coro6	UTSW	11	77,360,293 (GRCm39)	missense	probably benign	0.19
R1738:Coro6	UTSW	11	77,360,251 (GRCm39)	missense	probably benign	0.02
R2900:Coro6	UTSW	11	77,358,639 (GRCm39)	missense	probably benign
R3081:Coro6	UTSW	11	77,359,738 (GRCm39)	missense	probably damaging	1.00
R3700:Coro6	UTSW	11	77,358,129 (GRCm39)	missense	probably damaging	1.00
R4503:Coro6	UTSW	11	77,360,272 (GRCm39)	missense	probably benign	0.31
R4740:Coro6	UTSW	11	77,360,025 (GRCm39)	missense	possibly damaging	0.59
R4749:Coro6	UTSW	11	77,359,974 (GRCm39)	missense	probably damaging	1.00
R5501:Coro6	UTSW	11	77,358,622 (GRCm39)	missense	probably damaging	1.00
R5996:Coro6	UTSW	11	77,357,322 (GRCm39)	missense	probably benign	0.02
R6590:Coro6	UTSW	11	77,356,606 (GRCm39)	missense	probably benign	0.31
R6619:Coro6	UTSW	11	77,357,030 (GRCm39)	missense	possibly damaging	0.85
R6690:Coro6	UTSW	11	77,356,606 (GRCm39)	missense	probably benign	0.31
R7052:Coro6	UTSW	11	77,357,056 (GRCm39)	missense	probably benign	0.16
R7775:Coro6	UTSW	11	77,356,599 (GRCm39)	missense	probably benign	0.00
R8743:Coro6	UTSW	11	77,357,265 (GRCm39)	missense	probably damaging	0.98
R8865:Coro6	UTSW	11	77,359,917 (GRCm39)	missense	probably damaging	1.00
R9169:Coro6	UTSW	11	77,359,329 (GRCm39)	missense	probably damaging	1.00
R9384:Coro6	UTSW	11	77,360,218 (GRCm39)	missense	probably benign	0.32
X0064:Coro6	UTSW	11	77,359,434 (GRCm39)	critical splice donor site	probably null
Z1176:Coro6	UTSW	11	77,358,691 (GRCm39)	frame shift	probably null
Z1177:Coro6	UTSW	11	77,359,935 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGAAATAACCCTCAAGCGTGG -3'
(R):5'- GTGGTGTTCTATCCACAAGGG -3'

Sequencing Primer
(F):5'- AGCGTGGCTTATCCCAGCTG -3'
(R):5'- CCCCGTGCTCCACTTGG -3'

Posted On

2019-06-26