Mutagenetix > Incidental Mutation

Incidental Mutation 'R7226:Farsa'

562161

Institutional Source

Beutler Lab

Gene Symbol

Farsa

Ensembl Gene

ENSMUSG00000003808

Gene Name

phenylalanyl-tRNA synthetase, alpha subunit

Synonyms

0610012A19Rik, Farsla

MMRRC Submission

045298-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7226 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

85583618-85595886 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 85590689 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Asparagine at position 169 (I169N)

Ref Sequence

ENSEMBL: ENSMUSP00000003906 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000003906] [ENSMUST00000109754] [ENSMUST00000156970]

AlphaFold

Q8C0C7

Predicted Effect

probably benign
Transcript: ENSMUST00000003906
AA Change: I169N

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000003906
Gene: ENSMUSG00000003808
AA Change: I169N

Domain	Start	End	E-Value	Type
low complexity region	6	16	N/A	INTRINSIC
Pfam:tRNA-synt_2d	209	488	5.2e-92	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000109754
AA Change: I169N

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000105376
Gene: ENSMUSG00000003808
AA Change: I169N

Domain	Start	End	E-Value	Type
low complexity region	6	16	N/A	INTRINSIC
Pfam:tRNA-synt_2b	126	413	2.1e-8	PFAM
Pfam:tRNA-synt_2d	209	487	8.5e-95	PFAM
Pfam:tRNA-synt_2	336	437	1e-7	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000156970

SMART Domains

Protein: ENSMUSP00000120609
Gene: ENSMUSG00000003808

Domain	Start	End	E-Value	Type
Pfam:HTH_11	6	57	3.1e-7	PFAM
low complexity region	70	82	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Aminoacyl-tRNA synthetases are a class of enzymes that charge tRNAs with their cognate amino acids. This gene encodes a product which is similar to the catalytic subunit of prokaryotic and Saccharomyces cerevisiae phenylalanyl-tRNA synthetases (PheRS). This gene product has been shown to be expressed in a tumor-selective and cell cycle stage- and differentiation-dependent manner, the first member of the tRNA synthetase gene family shown to exhibit this type of regulated expression [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700025B11Rik	C	T	15: 77,443,189 (GRCm39)	V17I	unknown	Het
Acad8	T	A	9: 26,889,726 (GRCm39)	K323*	probably null	Het
Adam18	A	T	8: 25,137,824 (GRCm39)	C339S	probably damaging	Het
Anxa7	A	G	14: 20,510,263 (GRCm39)	F396L	probably damaging	Het
Ap2m1	T	A	16: 20,358,201 (GRCm39)	V73D	probably damaging	Het
Asic2	A	T	11: 80,862,340 (GRCm39)	I270N	probably damaging	Het
Atrn	T	G	2: 130,828,664 (GRCm39)	C1070G	probably damaging	Het
Bag6	A	G	17: 35,361,921 (GRCm39)	N517S	unknown	Het
Bhmt1b	A	G	18: 87,775,590 (GRCm39)	D371G	possibly damaging	Het
Bltp3b	A	T	10: 89,644,503 (GRCm39)	Q1181L	probably benign	Het
Cavin1	A	C	11: 100,861,284 (GRCm39)	D3E	probably benign	Het
Cc2d2b	T	C	19: 40,779,751 (GRCm39)	L571P	unknown	Het
Ccbe1	A	T	18: 66,216,199 (GRCm39)	C175S	probably damaging	Het
Cd19	A	G	7: 126,013,995 (GRCm39)	L5P	unknown	Het
Cd46	A	G	1: 194,724,314 (GRCm39)	S362P	possibly damaging	Het
Celf5	A	G	10: 81,303,863 (GRCm39)	S198P	probably damaging	Het
Cep170b	A	G	12: 112,704,359 (GRCm39)	R706G	possibly damaging	Het
Chd3	G	T	11: 69,260,037 (GRCm39)	R61S	unknown	Het
Cpsf6	A	C	10: 117,197,727 (GRCm39)	W253G	unknown	Het
Cyp27a1	G	A	1: 74,776,507 (GRCm39)	G481D	probably damaging	Het
Ddr1	C	T	17: 36,002,039 (GRCm39)	D218N	possibly damaging	Het
Dhx34	A	T	7: 15,932,801 (GRCm39)	V1046D	probably damaging	Het
Dhx9	A	T	1: 153,341,423 (GRCm39)	D608E	probably benign	Het
Dnajc6	C	A	4: 101,496,569 (GRCm39)	A912E	probably damaging	Het
Ehmt1	T	C	2: 24,694,794 (GRCm39)	D1051G	probably damaging	Het
Fam217b	C	A	2: 178,062,996 (GRCm39)	A320E	probably benign	Het
Fbn2	A	G	18: 58,170,142 (GRCm39)	C2210R	probably damaging	Het
Fbxo3	T	A	2: 103,880,642 (GRCm39)	S251T	probably benign	Het
Fer1l6	C	T	15: 58,462,384 (GRCm39)	T813I	probably benign	Het
Ftl1-ps1	A	T	13: 74,555,114 (GRCm39)	E131V	probably damaging	Het
Gins3	T	A	8: 96,364,499 (GRCm39)	I83N	probably damaging	Het
Gja3	T	C	14: 57,273,350 (GRCm39)	T341A	probably benign	Het
Gja5	A	G	3: 96,958,174 (GRCm39)	Y77C	probably damaging	Het
Gm7247	A	G	14: 51,602,808 (GRCm39)	K48R	probably damaging	Het
Gsx2	C	A	5: 75,236,621 (GRCm39)	S67*	probably null	Het
H2-Q5	T	A	17: 35,616,089 (GRCm39)	L217Q		Het
Impg2	T	A	16: 56,087,467 (GRCm39)	C1095*	probably null	Het
Itga7	G	T	10: 128,776,801 (GRCm39)	W222L	probably damaging	Het
Kdm2b	T	A	5: 123,059,512 (GRCm39)	D530V	possibly damaging	Het
Klhdc8a	A	T	1: 132,230,344 (GRCm39)	D153V	probably damaging	Het
Lin28a	C	T	4: 133,733,619 (GRCm39)	G143S	probably damaging	Het
Memo1	A	G	17: 74,509,338 (GRCm39)	L227S	probably damaging	Het
Mettl27	T	A	5: 134,964,657 (GRCm39)	V138E	probably damaging	Het
Mov10	G	T	3: 104,708,328 (GRCm39)	L474I	probably damaging	Het
Nat10	T	C	2: 103,557,098 (GRCm39)	N852S	probably benign	Het
Nfkbie	T	C	17: 45,870,153 (GRCm39)	V166A	possibly damaging	Het
Nktr	T	C	9: 121,575,599 (GRCm39)	M369T	probably damaging	Het
Nlrp9a	A	T	7: 26,258,149 (GRCm39)	N589I	probably benign	Het
Nrn1	G	A	13: 36,914,577 (GRCm39)	R8C	probably benign	Het
Nrsn1	A	G	13: 25,437,451 (GRCm39)	I159T	probably damaging	Het
Or1e29	A	G	11: 73,667,503 (GRCm39)	S217P	possibly damaging	Het
Or2h15	C	T	17: 38,441,324 (GRCm39)	G253D	probably benign	Het
Or5p61	A	T	7: 107,758,164 (GRCm39)	D305E	probably benign	Het
Or6c88	G	A	10: 129,406,584 (GRCm39)	G20D	probably benign	Het
Osbp	T	A	19: 11,956,031 (GRCm39)	D385E	probably benign	Het
Pan3	T	A	5: 147,463,802 (GRCm39)	N547K	probably damaging	Het
Pip4p2	T	A	4: 14,892,464 (GRCm39)	D109E	probably damaging	Het
Pum1	C	A	4: 130,499,292 (GRCm39)	T1036K	probably damaging	Het
Rad54l2	C	A	9: 106,590,671 (GRCm39)	R485L	probably damaging	Het
Rps26	A	T	10: 128,461,087 (GRCm39)	F101I	unknown	Het
Sdsl	T	C	5: 120,598,702 (GRCm39)	N138S	probably benign	Het
Slc28a2b	C	A	2: 122,353,013 (GRCm39)	R453S	probably benign	Het
Slc39a6	A	T	18: 24,717,084 (GRCm39)	H649Q	probably damaging	Het
Snip1	T	A	4: 124,965,273 (GRCm39)	F226Y	probably benign	Het
Srrd	T	C	5: 112,485,322 (GRCm39)	T334A	unknown	Het
St14	C	T	9: 31,011,448 (GRCm39)	D448N	possibly damaging	Het
Tmem270	T	A	5: 134,930,538 (GRCm39)	Q241L	probably benign	Het
Tubb4b	T	C	2: 25,114,180 (GRCm39)	D41G	probably benign	Het
Usf3	T	C	16: 44,040,368 (GRCm39)	M1616T	possibly damaging	Het
Vmn2r95	A	T	17: 18,672,245 (GRCm39)	I733F	possibly damaging	Het
Zfp976	A	T	7: 42,262,684 (GRCm39)	C385*	probably null	Het

Other mutations in Farsa

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00340:Farsa	APN	8	85,590,886 (GRCm39)	missense	probably damaging	1.00
IGL02273:Farsa	APN	8	85,594,455 (GRCm39)	missense	probably damaging	1.00
R0006:Farsa	UTSW	8	85,587,934 (GRCm39)	splice site	probably benign
R0599:Farsa	UTSW	8	85,594,212 (GRCm39)	missense	probably damaging	1.00
R0727:Farsa	UTSW	8	85,587,933 (GRCm39)	splice site	probably null
R1933:Farsa	UTSW	8	85,587,780 (GRCm39)	missense	probably benign	0.11
R4021:Farsa	UTSW	8	85,595,499 (GRCm39)	missense	probably damaging	1.00
R5127:Farsa	UTSW	8	85,595,593 (GRCm39)	missense	probably benign	0.00
R5975:Farsa	UTSW	8	85,591,061 (GRCm39)	splice site	probably null
R6307:Farsa	UTSW	8	85,587,674 (GRCm39)	critical splice donor site	probably null
R6476:Farsa	UTSW	8	85,583,809 (GRCm39)	missense	probably damaging	0.99
R7252:Farsa	UTSW	8	85,587,957 (GRCm39)	missense	probably damaging	1.00
R7593:Farsa	UTSW	8	85,594,278 (GRCm39)	critical splice donor site	probably null
R7773:Farsa	UTSW	8	85,590,781 (GRCm39)	critical splice donor site	probably null
R8033:Farsa	UTSW	8	85,594,198 (GRCm39)	missense	probably benign	0.40
R8235:Farsa	UTSW	8	85,595,545 (GRCm39)	missense	probably damaging	1.00
R8280:Farsa	UTSW	8	85,587,808 (GRCm39)	missense	probably damaging	1.00
R8984:Farsa	UTSW	8	85,594,228 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- ACTATGTAACCTGATCCTCTCTAGAG -3'
(R):5'- CCACTATGGGAGATTCAGGGTG -3'

Sequencing Primer
(F):5'- ACCACATAATCCTGGTGTGATGTAGG -3'
(R):5'- ATTCAGGGTGTAAAGGCGTG -3'

Posted On

2019-06-26