Mutagenetix > Incidental Mutation

Incidental Mutation 'R7257:Padi1'

564324

Institutional Source

Beutler Lab

Gene Symbol

Padi1

Ensembl Gene

ENSMUSG00000025329

Gene Name

peptidyl arginine deiminase, type I

Synonyms

Pad type 1, Pdi1

MMRRC Submission

045318-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.116) question?

Stock #

R7257 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

140540294-140573089 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 140556782 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glycine to Cysteine at position 142 (G142C)

Ref Sequence

ENSEMBL: ENSMUSP00000026378 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000026378]

AlphaFold

Q9Z185

Predicted Effect

probably damaging
Transcript: ENSMUST00000026378
AA Change: G142C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000026378
Gene: ENSMUSG00000025329
AA Change: G142C

Domain	Start	End	E-Value	Type
Pfam:PAD_N	1	113	5.4e-39	PFAM
Pfam:PAD_M	115	272	1.3e-63	PFAM
Pfam:PAD	280	659	9.4e-170	PFAM

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (77/77)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the peptidyl arginine deiminase family of enzymes, which catalyze the post-translational deimination of proteins by converting arginine residues into citrullines in the presence of calcium ions. The family members have distinct substrate specificities and tissue-specific expression patterns. The type I enzyme is involved in the late stages of epidermal differentiation, where it deiminates filaggrin and keratin K1, which maintains hydration of the stratum corneum, and hence the cutaneous barrier function. This enzyme may also play a role in hair follicle formation. This gene exists in a cluster with four other paralogous genes. [provided by RefSeq, Jul 2008]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abtb1	A	T	6: 88,816,434 (GRCm39)	V120E	probably benign	Het
Acot11	G	A	4: 106,615,599 (GRCm39)	T284M	probably damaging	Het
Adk	G	T	14: 21,102,739 (GRCm39)	K11N	probably damaging	Het
Akr1c14	T	A	13: 4,138,966 (GRCm39)	N316K	probably benign	Het
AL732309.1	A	T	2: 25,135,851 (GRCm39)	V121D	probably benign	Het
Amh	C	A	10: 80,642,487 (GRCm39)	Q257K	probably benign	Het
Antxrl	T	G	14: 33,787,806 (GRCm39)	H276Q	probably benign	Het
Atp5po	G	A	16: 91,723,755 (GRCm39)	T105M	probably damaging	Het
Atxn2	T	G	5: 121,923,880 (GRCm39)	N734K	possibly damaging	Het
B3gat3	T	A	19: 8,903,102 (GRCm39)	V153D	probably benign	Het
Brd2	A	G	17: 34,332,796 (GRCm39)	V528A	probably damaging	Het
Camk2g	T	C	14: 20,797,907 (GRCm39)	S335G	probably benign	Het
Cbln2	T	A	18: 86,734,859 (GRCm39)	W211R	probably damaging	Het
Cry2	A	T	2: 92,243,326 (GRCm39)	I505N	possibly damaging	Het
Ddx55	T	A	5: 124,698,784 (GRCm39)	C249S	possibly damaging	Het
Dglucy	A	G	12: 100,808,997 (GRCm39)	T232A	probably damaging	Het
Dhx32	A	G	7: 133,361,206 (GRCm39)	Y76H	probably benign	Het
Dmac2l	T	C	12: 69,788,443 (GRCm39)	I114T	probably damaging	Het
Dock7	T	A	4: 98,861,649 (GRCm39)	N1356I	unknown	Het
Dock8	T	A	19: 25,104,449 (GRCm39)	N710K	probably benign	Het
Dync1i2	T	A	2: 71,079,700 (GRCm39)	N391K	possibly damaging	Het
Ect2	A	G	3: 27,192,684 (GRCm39)	S420P	probably damaging	Het
Efcab5	T	A	11: 77,028,605 (GRCm39)	E242V	probably damaging	Het
Fam83g	T	A	11: 61,575,579 (GRCm39)	Y74N	probably damaging	Het
Fbxo34	T	A	14: 47,738,329 (GRCm39)		probably null	Het
Flt4	A	G	11: 49,516,836 (GRCm39)	T208A	probably benign	Het
Fxyd5	T	A	7: 30,734,576 (GRCm39)	H183L	unknown	Het
Gpr150	T	G	13: 76,204,585 (GRCm39)	D120A	probably benign	Het
Grm7	A	G	6: 110,623,079 (GRCm39)	Y84C	probably damaging	Het
Ighmbp2	A	G	19: 3,316,405 (GRCm39)	S562P	probably damaging	Het
Itga7	A	G	10: 128,780,282 (GRCm39)	Y530C	possibly damaging	Het
Itpr3	T	A	17: 27,337,535 (GRCm39)	D2448E	probably benign	Het
Mmp17	C	A	5: 129,672,697 (GRCm39)	H216Q	probably benign	Het
Mns1	C	T	9: 72,360,097 (GRCm39)	R416W	probably damaging	Het
Mog	A	G	17: 37,334,019 (GRCm39)	S25P	unknown	Het
Myh2	A	G	11: 67,071,976 (GRCm39)	K568R	possibly damaging	Het
Myh7	A	T	14: 55,209,947 (GRCm39)		probably null	Het
Mymk	A	T	2: 26,957,380 (GRCm39)	W79R	probably damaging	Het
Ncoa4	T	G	14: 31,899,326 (GRCm39)	L623R	probably damaging	Het
Oca2	G	A	7: 55,929,286 (GRCm39)		probably benign	Het
Odam	A	C	5: 88,035,404 (GRCm39)	S123R	probably benign	Het
Or14c39	T	A	7: 86,344,012 (GRCm39)	M116K	probably damaging	Het
Or2w1	A	G	13: 21,317,427 (GRCm39)	T161A	probably benign	Het
Or51f1d	T	C	7: 102,700,837 (GRCm39)	F111L	probably benign	Het
Or5d16	A	G	2: 87,773,915 (GRCm39)	F19S	probably damaging	Het
Or6c69	T	A	10: 129,748,156 (GRCm39)		probably benign	Het
Or6c8b	C	T	10: 128,882,324 (GRCm39)	V203M	probably benign	Het
Ovch2	C	T	7: 107,393,640 (GRCm39)	C162Y	probably damaging	Het
Pcdhga4	A	G	18: 37,820,451 (GRCm39)	I667V	probably damaging	Het
Pfas	A	T	11: 68,883,785 (GRCm39)	V624E	probably damaging	Het
Phb1	A	T	11: 95,568,917 (GRCm39)	E184V	probably damaging	Het
Phlpp2	G	T	8: 110,666,820 (GRCm39)	M1116I	probably benign	Het
Pip5kl1	T	C	2: 32,470,443 (GRCm39)		probably null	Het
Pitpnm2	T	A	5: 124,263,419 (GRCm39)	I824F	possibly damaging	Het
Pla2g4c	G	A	7: 13,059,669 (GRCm39)	S2N	possibly damaging	Het
Pla2r1	A	T	2: 60,257,969 (GRCm39)		probably null	Het
Pole2	T	C	12: 69,249,684 (GRCm39)	D521G	probably damaging	Het
Ptch1	T	C	13: 63,721,108 (GRCm39)	K54E	not run	Het
Rapgef2	A	T	3: 78,989,934 (GRCm39)	L931Q	probably damaging	Het
Rassf3	G	A	10: 121,248,924 (GRCm39)	Q206*	probably null	Het
Rnf123	T	A	9: 107,946,228 (GRCm39)	T316S	probably damaging	Het
Rnf138	T	A	18: 21,141,750 (GRCm39)		probably null	Het
Septin3	G	A	15: 82,173,414 (GRCm39)	A249T	probably damaging	Het
Slc35a4	A	T	18: 36,812,669 (GRCm39)	D3V	unknown	Het
Sltm	T	A	9: 70,451,247 (GRCm39)		probably null	Het
Smarca2	C	T	19: 26,631,864 (GRCm39)	Q560*	probably null	Het
Tcl1b1	A	T	12: 105,130,790 (GRCm39)	D91V	probably damaging	Het
Tirap	A	T	9: 35,100,330 (GRCm39)	V118E	probably damaging	Het
Tlr5	T	A	1: 182,801,798 (GRCm39)	Y367*	probably null	Het
Tmcc1	A	G	6: 116,084,299 (GRCm39)	F5L	probably benign	Het
Tnxb	A	G	17: 34,935,475 (GRCm39)	M2592V	probably benign	Het
Trim66	T	A	7: 109,059,451 (GRCm39)	E931V	probably damaging	Het
Ttn	A	G	2: 76,571,438 (GRCm39)	I26485T	probably damaging	Het
Veph1	C	A	3: 66,065,703 (GRCm39)	V455L	probably benign	Het
Vmn1r125	A	T	7: 21,006,750 (GRCm39)	H216L	probably damaging	Het
Wdr17	T	A	8: 55,085,522 (GRCm39)	E1200D	probably benign	Het
Zbtb37	T	A	1: 160,860,231 (GRCm39)	N25Y	probably damaging	Het

Other mutations in Padi1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01844:Padi1	APN	4	140,556,746 (GRCm39)	missense	probably damaging	1.00
IGL01972:Padi1	APN	4	140,546,170 (GRCm39)	splice site	probably benign
IGL03260:Padi1	APN	4	140,555,505 (GRCm39)	missense	probably benign	0.11
R0598:Padi1	UTSW	4	140,542,098 (GRCm39)	missense	possibly damaging	0.84
R1164:Padi1	UTSW	4	140,559,640 (GRCm39)	missense	possibly damaging	0.50
R1793:Padi1	UTSW	4	140,541,967 (GRCm39)	missense	probably damaging	1.00
R4208:Padi1	UTSW	4	140,544,538 (GRCm39)	missense	possibly damaging	0.80
R4256:Padi1	UTSW	4	140,542,089 (GRCm39)	missense	probably damaging	1.00
R4484:Padi1	UTSW	4	140,544,581 (GRCm39)	intron	probably benign
R4926:Padi1	UTSW	4	140,552,158 (GRCm39)	missense	probably damaging	0.99
R4967:Padi1	UTSW	4	140,572,901 (GRCm39)	missense	probably benign	0.00
R5066:Padi1	UTSW	4	140,556,748 (GRCm39)	missense	probably damaging	1.00
R5523:Padi1	UTSW	4	140,542,164 (GRCm39)	missense	probably damaging	1.00
R5622:Padi1	UTSW	4	140,552,266 (GRCm39)	missense	probably damaging	1.00
R5850:Padi1	UTSW	4	140,542,141 (GRCm39)	missense	probably benign	0.03
R5870:Padi1	UTSW	4	140,553,892 (GRCm39)	missense	probably benign	0.39
R5951:Padi1	UTSW	4	140,542,140 (GRCm39)	missense	probably damaging	1.00
R6187:Padi1	UTSW	4	140,554,276 (GRCm39)	missense	probably damaging	1.00
R7326:Padi1	UTSW	4	140,559,715 (GRCm39)	missense	probably benign	0.15
R7339:Padi1	UTSW	4	140,556,545 (GRCm39)	missense	probably null	0.98
R8282:Padi1	UTSW	4	140,542,014 (GRCm39)	missense	probably damaging	1.00
R9083:Padi1	UTSW	4	140,559,602 (GRCm39)	critical splice donor site	probably null
R9590:Padi1	UTSW	4	140,544,552 (GRCm39)	missense	probably damaging	1.00
X0024:Padi1	UTSW	4	140,555,478 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GAGTGGCTTTTGAGACAAGC -3'
(R):5'- ACTACACAAGGATGGCCATCTC -3'

Sequencing Primer
(F):5'- GCTTTTGAGACAAGCCCCCAAC -3'
(R):5'- ATGGCCATCTCTGGGTCTAAGC -3'

Posted On

2019-06-26