Mutagenetix > Incidental Mutation

Incidental Mutation 'R7265:Scn11a'

564880

Institutional Source

Beutler Lab

Gene Symbol

Scn11a

Ensembl Gene

ENSMUSG00000034115

Gene Name

sodium channel, voltage-gated, type XI, alpha

Synonyms

NaN, NSS2, NaT, SNS2

MMRRC Submission

045355-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.094) question?

Stock #

R7265 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

119582829-119654522 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 119644331 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Cysteine to Phenylalanine at position 143 (C143F)

Ref Sequence

ENSEMBL: ENSMUSP00000065466 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000070617] [ENSMUST00000215718]

AlphaFold

Q9R053

Predicted Effect

probably damaging
Transcript: ENSMUST00000070617
AA Change: C143F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000065466
Gene: ENSMUSG00000034115
AA Change: C143F

Domain	Start	End	E-Value	Type
low complexity region	27	43	N/A	INTRINSIC
Pfam:Ion_trans	128	409	1.1e-72	PFAM
low complexity region	475	487	N/A	INTRINSIC
Pfam:Ion_trans	574	810	4e-57	PFAM
Pfam:Na_trans_assoc	814	1030	4.1e-29	PFAM
Pfam:Ion_trans	1034	1300	5.7e-66	PFAM
Pfam:Ion_trans	1346	1595	3e-58	PFAM
low complexity region	1683	1694	N/A	INTRINSIC
low complexity region	1733	1744	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000215718
AA Change: C143F

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Voltage-gated sodium channels are transmembrane glycoprotein complexes composed of a large alpha subunit with 24 transmembrane domains and one or more regulatory beta subunits. They are responsible for the generation and propagation of action potentials in neurons and muscle. This gene encodes one member of the sodium channel alpha subunit gene family, and is highly expressed in nociceptive neurons of dorsal root ganglia and trigeminal ganglia. It mediates brain-derived neurotrophic factor-evoked membrane depolarization and is a major effector of peripheral inflammatory pain hypersensitivity. Mutations in this gene have been associated with hereditary sensory and autonomic neuropathy type VII and familial episodic pain syndrome-3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2017]
PHENOTYPE: Mice homozygous and heterozygous for one null allele display decreased duration of inflammation induced thermal hyperalgesia and decreased late phase pain responses to inflammatory stimuli. Mice homozygous for a second allele appear normal. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 67 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Asb3	A	G	11: 30,948,495 (GRCm39)	E57G	probably benign	Het
B3glct	A	G	5: 149,632,785 (GRCm39)	D45G	probably benign	Het
BC034090	C	A	1: 155,101,073 (GRCm39)	C397F	probably damaging	Het
Bicd1	A	G	6: 149,415,374 (GRCm39)	K696E	probably damaging	Het
Btnl4	C	T	17: 34,694,868 (GRCm39)	C15Y	probably benign	Het
Cabin1	T	C	10: 75,557,257 (GRCm39)	N300S		Het
Chia1	T	A	3: 106,036,239 (GRCm39)	L273Q	probably damaging	Het
Coq2	A	G	5: 100,808,136 (GRCm39)	S222P	possibly damaging	Het
Dgkb	T	C	12: 38,234,931 (GRCm39)	V432A	possibly damaging	Het
Dpp3	A	G	19: 4,973,797 (GRCm39)	F92S	probably damaging	Het
Elapor2	T	C	5: 9,496,975 (GRCm39)	V813A	possibly damaging	Het
Emcn	T	C	3: 137,122,839 (GRCm39)	S183P	probably damaging	Het
Emcn	T	A	3: 137,124,837 (GRCm39)	W217R	probably damaging	Het
Enpp2	A	C	15: 54,773,429 (GRCm39)		probably null	Het
Epb41	T	C	4: 131,695,145 (GRCm39)	E14G	unknown	Het
Fhip1b	G	T	7: 105,033,432 (GRCm39)	R609S	probably benign	Het
Grk4	A	G	5: 34,873,608 (GRCm39)	R225G	probably damaging	Het
Insl6	A	T	19: 29,298,945 (GRCm39)	W156R	possibly damaging	Het
Ints3	A	T	3: 90,311,290 (GRCm39)		probably null	Het
Jarid2	G	A	13: 45,055,748 (GRCm39)	G318D	probably benign	Het
Kif16b	A	T	2: 142,556,650 (GRCm39)	L596H	probably damaging	Het
Lctl	T	A	9: 64,034,203 (GRCm39)	Y281N	probably damaging	Het
Letm1	A	T	5: 33,935,992 (GRCm39)	C34S	possibly damaging	Het
Lrrc32	T	C	7: 98,148,644 (GRCm39)	S475P	probably damaging	Het
Lrrc37a	T	A	11: 103,389,767 (GRCm39)	D1886V	probably benign	Het
Macf1	A	T	4: 123,301,670 (GRCm39)	I944K	probably benign	Het
Mark4	T	C	7: 19,185,650 (GRCm39)	D28G	probably benign	Het
Mecom	C	A	3: 30,034,282 (GRCm39)	A465S	possibly damaging	Het
Muc16	A	G	9: 18,567,768 (GRCm39)	S1584P	unknown	Het
Mycbp2	A	G	14: 103,434,679 (GRCm39)		probably null	Het
Myo18b	G	A	5: 112,959,938 (GRCm39)	R1372W	probably damaging	Het
Myo1c	T	C	11: 75,560,616 (GRCm39)	I706T	possibly damaging	Het
Myo1g	T	C	11: 6,460,933 (GRCm39)	T704A	possibly damaging	Het
Nwd1	A	G	8: 73,419,556 (GRCm39)	K914E	probably benign	Het
Or5ac20	T	A	16: 59,104,287 (GRCm39)	D191V	probably damaging	Het
Or8b101	A	T	9: 38,020,227 (GRCm39)	I77L	possibly damaging	Het
Or8k23	C	T	2: 86,186,088 (GRCm39)	V213I	probably benign	Het
Otub2	C	T	12: 103,366,480 (GRCm39)	S99L	probably damaging	Het
Pak5	G	A	2: 135,943,105 (GRCm39)	S345L	probably benign	Het
Pcdhb20	A	T	18: 37,638,616 (GRCm39)	I381F	possibly damaging	Het
Pcdhga7	A	G	18: 37,849,969 (GRCm39)	T659A	probably damaging	Het
Phf8-ps	G	A	17: 33,285,971 (GRCm39)	T277I	probably damaging	Het
Pik3c2a	T	A	7: 115,987,321 (GRCm39)	K533N	probably damaging	Het
Pkd1l1	T	A	11: 8,879,402 (GRCm39)	Q933L		Het
Ppp4r3a	A	T	12: 101,019,770 (GRCm39)	M395K	possibly damaging	Het
Pramel11	C	A	4: 143,621,991 (GRCm39)	V455L	probably benign	Het
Ptpn20	A	G	14: 33,336,481 (GRCm39)	T107A	probably benign	Het
Scaf8	T	A	17: 3,227,900 (GRCm39)	D376E	unknown	Het
Sctr	G	A	1: 119,949,955 (GRCm39)	R48Q	probably benign	Het
Sec13	A	T	6: 113,712,097 (GRCm39)	Y79*	probably null	Het
Sez6	T	A	11: 77,853,691 (GRCm39)	I287N	probably damaging	Het
Slc52a3	T	A	2: 151,846,336 (GRCm39)	I99K	possibly damaging	Het
Slco4c1	T	G	1: 96,799,518 (GRCm39)	H106P	probably damaging	Het
Tada2b	A	G	5: 36,633,952 (GRCm39)	Y209H	probably damaging	Het
Tas1r2	T	A	4: 139,396,963 (GRCm39)	D796E	probably benign	Het
Tdrd12	A	T	7: 35,187,147 (GRCm39)	M581K		Het
Thnsl1	A	G	2: 21,217,269 (GRCm39)	E341G	probably damaging	Het
Tlk2	C	T	11: 105,075,070 (GRCm39)	R11*	probably null	Het
Tmco6	T	C	18: 36,872,396 (GRCm39)		probably null	Het
Trmt44	A	T	5: 35,721,647 (GRCm39)	H505Q	probably benign	Het
Trpc1	T	C	9: 95,590,328 (GRCm39)	M710V	probably benign	Het
Ttc21b	T	C	2: 66,040,517 (GRCm39)	E858G	possibly damaging	Het
Twsg1	C	T	17: 66,236,782 (GRCm39)	D83N	possibly damaging	Het
Umod	G	T	7: 119,065,296 (GRCm39)	Q578K	probably benign	Het
Vmn2r6	T	C	3: 64,464,195 (GRCm39)	N213S	probably benign	Het
Vmn2r88	G	A	14: 51,655,776 (GRCm39)	V662I		Het
Zfp414	C	A	17: 33,850,253 (GRCm39)	D217E	probably benign	Het

Other mutations in Scn11a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00087:Scn11a	APN	9	119,599,572 (GRCm39)	missense	probably benign	0.00
IGL00272:Scn11a	APN	9	119,645,669 (GRCm39)	missense	probably damaging	0.98
IGL00332:Scn11a	APN	9	119,598,982 (GRCm39)	missense	probably damaging	1.00
IGL00533:Scn11a	APN	9	119,603,447 (GRCm39)	missense	probably damaging	1.00
IGL00972:Scn11a	APN	9	119,623,004 (GRCm39)	missense	probably benign	0.44
IGL01338:Scn11a	APN	9	119,613,227 (GRCm39)	splice site	probably benign
IGL01534:Scn11a	APN	9	119,609,888 (GRCm39)	missense	probably benign	0.27
IGL01838:Scn11a	APN	9	119,587,649 (GRCm39)	missense	probably damaging	1.00
IGL01991:Scn11a	APN	9	119,648,970 (GRCm39)	missense	probably damaging	0.97
IGL02057:Scn11a	APN	9	119,594,536 (GRCm39)	missense	probably damaging	1.00
IGL02290:Scn11a	APN	9	119,603,508 (GRCm39)	missense	probably damaging	0.97
IGL02454:Scn11a	APN	9	119,587,610 (GRCm39)	missense	probably benign	0.00
IGL02517:Scn11a	APN	9	119,621,464 (GRCm39)	missense	probably damaging	1.00
IGL02567:Scn11a	APN	9	119,633,555 (GRCm39)	missense	probably damaging	0.99
IGL02587:Scn11a	APN	9	119,634,750 (GRCm39)	missense	probably damaging	1.00
IGL03069:Scn11a	APN	9	119,619,029 (GRCm39)	missense	probably benign	0.16
IGL03171:Scn11a	APN	9	119,648,913 (GRCm39)	missense	probably benign	0.00
Kleinie	UTSW	9	119,632,569 (GRCm39)	missense	probably benign	0.16
H8441:Scn11a	UTSW	9	119,636,976 (GRCm39)	missense	probably damaging	1.00
PIT4449001:Scn11a	UTSW	9	119,599,014 (GRCm39)	missense	probably damaging	1.00
R0304:Scn11a	UTSW	9	119,648,928 (GRCm39)	missense	probably benign	0.00
R0519:Scn11a	UTSW	9	119,619,185 (GRCm39)	missense	probably damaging	1.00
R0658:Scn11a	UTSW	9	119,640,226 (GRCm39)	missense	probably benign	0.41
R0828:Scn11a	UTSW	9	119,584,073 (GRCm39)	missense	probably benign	0.00
R0893:Scn11a	UTSW	9	119,632,396 (GRCm39)	splice site	probably null
R0932:Scn11a	UTSW	9	119,636,876 (GRCm39)	missense	probably damaging	1.00
R1061:Scn11a	UTSW	9	119,624,729 (GRCm39)	missense	probably damaging	0.98
R1161:Scn11a	UTSW	9	119,584,123 (GRCm39)	nonsense	probably null
R1162:Scn11a	UTSW	9	119,634,710 (GRCm39)	splice site	probably benign
R1310:Scn11a	UTSW	9	119,584,123 (GRCm39)	nonsense	probably null
R1589:Scn11a	UTSW	9	119,598,873 (GRCm39)	missense	probably damaging	1.00
R1681:Scn11a	UTSW	9	119,633,478 (GRCm39)	missense	possibly damaging	0.46
R1781:Scn11a	UTSW	9	119,584,148 (GRCm39)	missense	probably damaging	1.00
R1812:Scn11a	UTSW	9	119,609,931 (GRCm39)	nonsense	probably null
R1901:Scn11a	UTSW	9	119,608,102 (GRCm39)	nonsense	probably null
R1978:Scn11a	UTSW	9	119,609,861 (GRCm39)	nonsense	probably null
R1985:Scn11a	UTSW	9	119,583,744 (GRCm39)	missense	probably benign	0.19
R2022:Scn11a	UTSW	9	119,640,274 (GRCm39)	missense	possibly damaging	0.88
R2072:Scn11a	UTSW	9	119,640,274 (GRCm39)	missense	possibly damaging	0.88
R2098:Scn11a	UTSW	9	119,621,560 (GRCm39)	missense	possibly damaging	0.67
R2163:Scn11a	UTSW	9	119,584,091 (GRCm39)	missense	probably damaging	1.00
R2250:Scn11a	UTSW	9	119,587,668 (GRCm39)	missense	probably benign	0.01
R2373:Scn11a	UTSW	9	119,642,252 (GRCm39)	missense	probably benign	0.43
R2508:Scn11a	UTSW	9	119,594,595 (GRCm39)	missense	probably damaging	1.00
R3757:Scn11a	UTSW	9	119,632,569 (GRCm39)	missense	probably benign	0.16
R3767:Scn11a	UTSW	9	119,613,115 (GRCm39)	missense	probably damaging	1.00
R3770:Scn11a	UTSW	9	119,613,115 (GRCm39)	missense	probably damaging	1.00
R4089:Scn11a	UTSW	9	119,624,719 (GRCm39)	splice site	probably null
R4092:Scn11a	UTSW	9	119,619,036 (GRCm39)	missense	probably benign	0.03
R4247:Scn11a	UTSW	9	119,636,952 (GRCm39)	missense	probably damaging	1.00
R4279:Scn11a	UTSW	9	119,583,428 (GRCm39)	missense	probably benign	0.25
R4299:Scn11a	UTSW	9	119,594,572 (GRCm39)	missense	probably damaging	0.97
R4403:Scn11a	UTSW	9	119,624,733 (GRCm39)	missense	probably damaging	1.00
R4468:Scn11a	UTSW	9	119,584,053 (GRCm39)	missense	probably damaging	1.00
R4542:Scn11a	UTSW	9	119,584,200 (GRCm39)	missense	probably damaging	1.00
R4644:Scn11a	UTSW	9	119,644,269 (GRCm39)	splice site	probably null
R4739:Scn11a	UTSW	9	119,583,627 (GRCm39)	missense	probably benign	0.39
R4809:Scn11a	UTSW	9	119,648,936 (GRCm39)	missense	probably benign	0.00
R4954:Scn11a	UTSW	9	119,587,725 (GRCm39)	missense	possibly damaging	0.84
R5012:Scn11a	UTSW	9	119,609,944 (GRCm39)	missense	probably benign	0.31
R5044:Scn11a	UTSW	9	119,648,897 (GRCm39)	missense	probably damaging	0.98
R5222:Scn11a	UTSW	9	119,644,268 (GRCm39)	splice site	probably null
R5224:Scn11a	UTSW	9	119,583,858 (GRCm39)	missense	probably damaging	1.00
R5400:Scn11a	UTSW	9	119,598,974 (GRCm39)	missense	probably damaging	0.97
R5555:Scn11a	UTSW	9	119,584,304 (GRCm39)	missense	probably damaging	1.00
R5711:Scn11a	UTSW	9	119,618,990 (GRCm39)	missense	probably damaging	1.00
R5950:Scn11a	UTSW	9	119,640,190 (GRCm39)	missense	probably damaging	1.00
R5984:Scn11a	UTSW	9	119,613,082 (GRCm39)	missense	probably benign
R6057:Scn11a	UTSW	9	119,594,514 (GRCm39)	missense	probably damaging	1.00
R6104:Scn11a	UTSW	9	119,624,744 (GRCm39)	missense	probably damaging	1.00
R6180:Scn11a	UTSW	9	119,583,933 (GRCm39)	missense	probably benign	0.00
R6892:Scn11a	UTSW	9	119,636,035 (GRCm39)	missense	possibly damaging	0.53
R6908:Scn11a	UTSW	9	119,621,492 (GRCm39)	missense	probably damaging	1.00
R6949:Scn11a	UTSW	9	119,594,580 (GRCm39)	missense	probably benign	0.04
R7112:Scn11a	UTSW	9	119,583,875 (GRCm39)	missense	probably damaging	1.00
R7232:Scn11a	UTSW	9	119,588,982 (GRCm39)	missense	probably damaging	1.00
R7261:Scn11a	UTSW	9	119,648,899 (GRCm39)	missense	probably damaging	0.99
R7302:Scn11a	UTSW	9	119,636,017 (GRCm39)	missense	probably benign	0.03
R7391:Scn11a	UTSW	9	119,624,783 (GRCm39)	missense	probably damaging	1.00
R7441:Scn11a	UTSW	9	119,587,692 (GRCm39)	missense	probably benign	0.01
R7479:Scn11a	UTSW	9	119,588,941 (GRCm39)	missense	probably benign	0.38
R7608:Scn11a	UTSW	9	119,644,379 (GRCm39)	splice site	probably null
R7768:Scn11a	UTSW	9	119,644,338 (GRCm39)	missense	probably benign	0.13
R7785:Scn11a	UTSW	9	119,645,622 (GRCm39)	missense	probably benign	0.00
R7794:Scn11a	UTSW	9	119,594,580 (GRCm39)	missense	probably damaging	0.99
R7818:Scn11a	UTSW	9	119,613,177 (GRCm39)	missense	probably damaging	0.97
R7884:Scn11a	UTSW	9	119,633,617 (GRCm39)	missense	probably benign	0.01
R7988:Scn11a	UTSW	9	119,594,503 (GRCm39)	missense	probably damaging	0.97
R8049:Scn11a	UTSW	9	119,584,149 (GRCm39)	missense	probably damaging	1.00
R8127:Scn11a	UTSW	9	119,633,578 (GRCm39)	missense	probably damaging	1.00
R8274:Scn11a	UTSW	9	119,632,548 (GRCm39)	missense	probably benign
R8344:Scn11a	UTSW	9	119,611,036 (GRCm39)	missense	probably benign	0.00
R8346:Scn11a	UTSW	9	119,608,047 (GRCm39)	missense	probably damaging	1.00
R8511:Scn11a	UTSW	9	119,618,981 (GRCm39)	missense	probably damaging	0.99
R8819:Scn11a	UTSW	9	119,645,586 (GRCm39)	missense	probably benign	0.19
R8820:Scn11a	UTSW	9	119,645,586 (GRCm39)	missense	probably benign	0.19
R8837:Scn11a	UTSW	9	119,621,410 (GRCm39)	missense	probably damaging	1.00
R8913:Scn11a	UTSW	9	119,623,094 (GRCm39)	missense	probably damaging	1.00
R8915:Scn11a	UTSW	9	119,603,363 (GRCm39)	nonsense	probably null
R8975:Scn11a	UTSW	9	119,587,565 (GRCm39)	missense	probably damaging	1.00
R9156:Scn11a	UTSW	9	119,588,989 (GRCm39)	missense	possibly damaging	0.75
R9222:Scn11a	UTSW	9	119,611,013 (GRCm39)	missense	probably damaging	0.98
R9355:Scn11a	UTSW	9	119,584,160 (GRCm39)	missense	probably damaging	1.00
R9486:Scn11a	UTSW	9	119,624,774 (GRCm39)	missense	possibly damaging	0.86
R9712:Scn11a	UTSW	9	119,619,076 (GRCm39)	nonsense	probably null
R9766:Scn11a	UTSW	9	119,584,181 (GRCm39)	missense	probably damaging	1.00
Z1088:Scn11a	UTSW	9	119,584,308 (GRCm39)	missense	probably damaging	1.00
Z1177:Scn11a	UTSW	9	119,648,886 (GRCm39)	missense	probably damaging	1.00
Z1177:Scn11a	UTSW	9	119,584,064 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- AATACTTTTGGGGCTCGAGG -3'
(R):5'- AGCACTGACTTGTCCAGAGC -3'

Sequencing Primer
(F):5'- ATATCTATCTGAGGACGCCCTTGAG -3'
(R):5'- CTGGCTCTCACAGGGAAGAGATAC -3'

Posted On

2019-06-26