Incidental Mutation 'R0584:Gpd1l'
ID 56562
Institutional Source Beutler Lab
Gene Symbol Gpd1l
Ensembl Gene ENSMUSG00000050627
Gene Name glycerol-3-phosphate dehydrogenase 1-like
Synonyms D9Ertd660e, 2210409H23Rik
MMRRC Submission 038774-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R0584 (G1)
Quality Score 193
Status Validated
Chromosome 9
Chromosomal Location 114728409-114763055 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 114743412 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Phenylalanine to Leucine at position 163 (F163L)
Ref Sequence ENSEMBL: ENSMUSP00000117509 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000084853] [ENSMUST00000146623]
AlphaFold Q3ULJ0
Predicted Effect probably damaging
Transcript: ENSMUST00000084853
AA Change: F163L

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000081913
Gene: ENSMUSG00000050627
AA Change: F163L

DomainStartEndE-ValueType
Pfam:NAD_Gly3P_dh_N 7 176 4.9e-56 PFAM
Pfam:NAD_Gly3P_dh_C 194 319 9.8e-50 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000146266
Predicted Effect probably damaging
Transcript: ENSMUST00000146623
AA Change: F163L

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000117509
Gene: ENSMUSG00000050627
AA Change: F163L

DomainStartEndE-ValueType
Pfam:NAD_Gly3P_dh_N 7 176 3.6e-52 PFAM
Pfam:NAD_Gly3P_dh_C 195 342 6.8e-51 PFAM
Meta Mutation Damage Score 0.6973 question?
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.8%
  • 10x: 97.2%
  • 20x: 93.7%
Validation Efficiency 98% (47/48)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene catalyzes the conversion of sn-glycerol 3-phosphate to glycerone phosphate. The encoded protein is found in the cytoplasm, associated with the plasma membrane, where it binds the sodium channel, voltage-gated, type V, alpha subunit (SCN5A). Defects in this gene are a cause of Brugada syndrome type 2 (BRS2) as well as sudden infant death syndrome (SIDS). [provided by RefSeq, Jul 2010]
Allele List at MGI
Other mutations in this stock
Total: 45 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abca7 T C 10: 79,847,564 (GRCm39) S1745P probably damaging Het
Agfg2 G A 5: 137,665,992 (GRCm39) T89I probably damaging Het
Agtr1a A G 13: 30,565,017 (GRCm39) I27M probably damaging Het
Armh1 A T 4: 117,087,047 (GRCm39) L206Q probably damaging Het
Asxl2 A T 12: 3,546,632 (GRCm39) E472V probably damaging Het
Atp2c2 T A 8: 120,465,157 (GRCm39) V313E probably benign Het
Casp12 A G 9: 5,352,268 (GRCm39) I87V probably null Het
Ccl25 C T 8: 4,404,085 (GRCm39) probably benign Het
Col9a1 T C 1: 24,263,571 (GRCm39) probably benign Het
Cyth4 A G 15: 78,494,078 (GRCm39) probably null Het
Dnah9 A G 11: 65,881,315 (GRCm39) Y2587H probably damaging Het
Dppa3 T C 6: 122,606,951 (GRCm39) I147T probably benign Het
Fam120b T C 17: 15,622,384 (GRCm39) S121P probably damaging Het
Fam209 C T 2: 172,316,081 (GRCm39) T152M probably benign Het
Fam98a A G 17: 75,851,772 (GRCm39) L103P probably damaging Het
Fcho1 T C 8: 72,168,369 (GRCm39) Y218C probably damaging Het
Fitm1 T C 14: 55,814,113 (GRCm39) V203A probably benign Het
Gcn1 G A 5: 115,733,074 (GRCm39) R1037Q probably damaging Het
Gm11563 A G 11: 99,549,451 (GRCm39) I101T unknown Het
Grp C A 18: 66,006,766 (GRCm39) A30E possibly damaging Het
H1f7 C A 15: 98,154,958 (GRCm39) E64* probably null Het
Icosl T C 10: 77,907,709 (GRCm39) Y90H possibly damaging Het
Itsn2 A G 12: 4,747,180 (GRCm39) T1194A probably benign Het
Lrp6 A G 6: 134,433,039 (GRCm39) S1431P probably damaging Het
Ltbp1 T C 17: 75,670,467 (GRCm39) S1503P probably damaging Het
Mef2a G T 7: 66,884,896 (GRCm39) S406* probably null Het
Myh13 G T 11: 67,251,200 (GRCm39) E1360* probably null Het
Nop58 A G 1: 59,745,919 (GRCm39) D400G probably benign Het
Or5p79 T C 7: 108,221,622 (GRCm39) L201P probably benign Het
Or6c205 T C 10: 129,086,817 (GRCm39) V138A probably benign Het
Oscp1 A G 4: 125,977,387 (GRCm39) probably null Het
Pde9a A T 17: 31,678,951 (GRCm39) Y264F probably damaging Het
Pkhd1 T A 1: 20,309,660 (GRCm39) K2763* probably null Het
Prkci T A 3: 31,079,289 (GRCm39) C42* probably null Het
Ptprr T C 10: 116,087,063 (GRCm39) V270A probably damaging Het
Rsf1 T A 7: 97,311,335 (GRCm39) N688K possibly damaging Het
S1pr3 A T 13: 51,573,697 (GRCm39) M293L probably benign Het
Scn10a A C 9: 119,499,597 (GRCm39) L232R probably damaging Het
Sirt5 T A 13: 43,548,204 (GRCm39) probably null Het
Sp6 C T 11: 96,913,091 (GRCm39) T268M probably damaging Het
Spag5 A G 11: 78,194,921 (GRCm39) N76S possibly damaging Het
Tecta T C 9: 42,259,204 (GRCm39) N1560D possibly damaging Het
Togaram1 T C 12: 65,014,279 (GRCm39) L510P probably damaging Het
Umps A G 16: 33,779,494 (GRCm39) I401T probably damaging Het
Vars2 A G 17: 35,977,578 (GRCm39) V118A possibly damaging Het
Other mutations in Gpd1l
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02644:Gpd1l APN 9 114,732,725 (GRCm39) splice site probably null
R1847:Gpd1l UTSW 9 114,743,399 (GRCm39) missense probably damaging 1.00
R1966:Gpd1l UTSW 9 114,743,462 (GRCm39) missense probably benign 0.03
R4082:Gpd1l UTSW 9 114,746,146 (GRCm39) missense probably damaging 1.00
R5951:Gpd1l UTSW 9 114,743,473 (GRCm39) missense probably benign 0.00
R6845:Gpd1l UTSW 9 114,762,785 (GRCm39) start codon destroyed probably null 0.00
R7445:Gpd1l UTSW 9 114,749,742 (GRCm39) missense probably damaging 1.00
X0022:Gpd1l UTSW 9 114,743,394 (GRCm39) missense probably null 1.00
Z1176:Gpd1l UTSW 9 114,733,848 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GCCTGAGTTTATTTATAGGCAGGCCAT -3'
(R):5'- CAAAGCAAGTTGCTTCATTCTGTCCTC -3'

Sequencing Primer
(F):5'- ATGTGCAGCATATGAGGCCC -3'
(R):5'- cccaggctgacttccaac -3'
Posted On 2013-07-11