Mutagenetix > Incidental Mutation

Incidental Mutation 'R7283:Pkhd1l1'

565827

Institutional Source

Beutler Lab

Gene Symbol

Pkhd1l1

Ensembl Gene

ENSMUSG00000038725

Gene Name

polycystic kidney and hepatic disease 1-like 1

Synonyms

fibrocystin L, D86 mRNA, PKHDL1

MMRRC Submission

045361-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7283 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

44320890-44464765 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 44366676 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 718 (N718S)

Ref Sequence

ENSEMBL: ENSMUSP00000036988 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038336] [ENSMUST00000166957] [ENSMUST00000209244]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000038336
AA Change: N718S

PolyPhen 2 Score 0.100 (Sensitivity: 0.93; Specificity: 0.86)

SMART Domains

Protein: ENSMUSP00000036988
Gene: ENSMUSG00000038725
AA Change: N718S

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IPT	30	141	9.02e-3	SMART
Pfam:TIG	146	255	1.6e-16	PFAM
IPT	269	362	2.27e-8	SMART
PbH1	398	420	2.98e3	SMART
IPT	1066	1154	5.34e-5	SMART
IPT	1156	1235	1.44e-1	SMART
Pfam:TIG	1240	1322	1.1e-13	PFAM
IPT	1328	1407	7.06e0	SMART
Pfam:TIG	1565	1645	5.1e-11	PFAM
IPT	1657	1743	1.89e-5	SMART
Pfam:TIG	1748	1828	2.1e-10	PFAM
IPT	1829	1910	4.87e-8	SMART
IPT	1914	1997	6.84e-3	SMART
IPT	1998	2085	9.86e-1	SMART
IPT	2089	2176	7.21e-11	SMART
PbH1	2105	2126	1.56e3	SMART
G8	2183	2303	2.37e-59	SMART
PbH1	2484	2506	9.48e3	SMART
PbH1	2507	2529	8.45e2	SMART
PbH1	2565	2587	4.11e3	SMART
PbH1	2664	2686	3.5e3	SMART
PbH1	2732	2755	2.7e3	SMART
Blast:G8	2949	2979	1e-5	BLAST
low complexity region	3014	3025	N/A	INTRINSIC
G8	3035	3173	6.5e-57	SMART
PbH1	3292	3314	1.96e3	SMART
PbH1	3354	3376	3.79e1	SMART
PbH1	3415	3437	4.87e2	SMART
PbH1	3470	3492	8.34e3	SMART
PbH1	3493	3514	5.86e3	SMART
low complexity region	3563	3574	N/A	INTRINSIC
low complexity region	4076	4103	N/A	INTRINSIC
low complexity region	4184	4212	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000166957
AA Change: N718S

PolyPhen 2 Score 0.056 (Sensitivity: 0.94; Specificity: 0.84)

SMART Domains

Protein: ENSMUSP00000129522
Gene: ENSMUSG00000038725
AA Change: N718S

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
IPT	30	141	9.02e-3	SMART
Pfam:TIG	146	255	9.4e-18	PFAM
IPT	269	362	2.27e-8	SMART
PbH1	398	420	2.98e3	SMART
IPT	1066	1154	5.34e-5	SMART
IPT	1156	1235	1.44e-1	SMART
Pfam:TIG	1240	1323	3e-13	PFAM
IPT	1328	1407	7.06e0	SMART
Pfam:TIG	1565	1645	3.7e-11	PFAM
IPT	1657	1743	1.89e-5	SMART
Pfam:TIG	1748	1828	9.7e-12	PFAM
IPT	1829	1910	4.87e-8	SMART
IPT	1914	1997	6.84e-3	SMART
IPT	1998	2085	9.86e-1	SMART
IPT	2089	2176	7.21e-11	SMART
PbH1	2105	2126	1.56e3	SMART
G8	2183	2303	2.37e-59	SMART
PbH1	2484	2506	9.48e3	SMART
PbH1	2507	2529	8.45e2	SMART
PbH1	2565	2587	4.11e3	SMART
PbH1	2664	2686	3.5e3	SMART
PbH1	2732	2755	2.7e3	SMART
Blast:G8	2949	2979	1e-5	BLAST
low complexity region	3014	3025	N/A	INTRINSIC
G8	3035	3173	6.5e-57	SMART
PbH1	3292	3314	1.96e3	SMART
PbH1	3354	3376	3.79e1	SMART
PbH1	3415	3437	4.87e2	SMART
PbH1	3470	3492	8.34e3	SMART
PbH1	3493	3514	5.86e3	SMART
low complexity region	3563	3574	N/A	INTRINSIC
low complexity region	4076	4103	N/A	INTRINSIC
low complexity region	4184	4212	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000209244
AA Change: N718S

PolyPhen 2 Score 0.100 (Sensitivity: 0.93; Specificity: 0.86)

Meta Mutation Damage Score

0.1652

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.5%

Validation Efficiency

100% (72/72)

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4833439L19Rik	A	G	13: 54,700,504 (GRCm39)	V278A	probably benign	Het
Abcc3	C	T	11: 94,247,873 (GRCm39)	A1207T	probably benign	Het
Abce1	C	A	8: 80,411,885 (GRCm39)	G592*	probably null	Het
Acad10	A	C	5: 121,787,538 (GRCm39)	V137G	possibly damaging	Het
Adcy3	A	G	12: 4,253,563 (GRCm39)	I672V	not run	Het
Adgrb1	A	T	15: 74,452,512 (GRCm39)	Q1166L	possibly damaging	Het
Ankrd44	A	T	1: 54,768,955 (GRCm39)	N465K	probably damaging	Het
Avpr1b	A	G	1: 131,537,469 (GRCm39)	T418A	probably benign	Het
Azin1	G	A	15: 38,501,652 (GRCm39)	T33I	probably damaging	Het
Bicra	T	C	7: 15,706,425 (GRCm39)	T1339A	probably damaging	Het
Bltp2	A	G	11: 78,165,654 (GRCm39)	Q1346R	probably damaging	Het
Cacna1s	A	G	1: 136,001,446 (GRCm39)	Y299C	probably damaging	Het
Clip1	A	C	5: 123,751,857 (GRCm39)	C641W		Het
Clip3	T	C	7: 30,005,237 (GRCm39)	S524P	probably damaging	Het
Cnpy4	A	T	5: 138,191,144 (GRCm39)	H240L	probably benign	Het
Cyp2b19	T	C	7: 26,466,339 (GRCm39)	Y381H	probably damaging	Het
Cyp3a13	T	A	5: 137,903,818 (GRCm39)	N280I	probably benign	Het
Diaph3	A	G	14: 87,104,020 (GRCm39)	F788S	probably damaging	Het
Drc7	A	G	8: 95,798,207 (GRCm39)	N484S	probably damaging	Het
Erap1	G	A	13: 74,821,903 (GRCm39)		probably null	Het
Fat4	A	T	3: 38,943,842 (GRCm39)	I912F	probably damaging	Het
Hsd3b3	T	A	3: 98,649,673 (GRCm39)	K217*	probably null	Het
Igkv12-89	A	G	6: 68,812,061 (GRCm39)	V36A	probably damaging	Het
Invs	T	A	4: 48,392,526 (GRCm39)		probably null	Het
Ipo8	T	A	6: 148,725,979 (GRCm39)	Y30F	possibly damaging	Het
Kctd14	T	C	7: 97,100,693 (GRCm39)	M1T	probably null	Het
Klrb1c	A	T	6: 128,761,220 (GRCm39)	C136S	probably benign	Het
Morn2	A	G	17: 80,604,688 (GRCm39)	E48G	probably damaging	Het
Myh1	A	T	11: 67,092,670 (GRCm39)		probably null	Het
Nbeal1	G	C	1: 60,276,310 (GRCm39)	V684L	probably benign	Het
Nfxl1	A	G	5: 72,686,393 (GRCm39)	S603P	probably benign	Het
Nlrc3	G	A	16: 3,765,741 (GRCm39)	A351V	probably benign	Het
Nlrp4f	G	A	13: 65,343,352 (GRCm39)	R76*	probably null	Het
Or1e1f	T	C	11: 73,855,634 (GRCm39)	S67P	probably damaging	Het
Or52n1	G	T	7: 104,382,800 (GRCm39)	T257K	probably damaging	Het
Or5h22	A	T	16: 58,894,555 (GRCm39)	M296K	probably benign	Het
Or7e176	A	C	9: 20,171,555 (GRCm39)	I140L	probably damaging	Het
Or8k41	A	T	2: 86,313,483 (GRCm39)	I201N	probably damaging	Het
Papolg	A	G	11: 23,817,394 (GRCm39)	V601A	not run	Het
Pde4dip	T	C	3: 97,666,198 (GRCm39)	T349A	probably benign	Het
Pdlim5	T	C	3: 142,017,741 (GRCm39)		probably null	Het
Plcxd3	A	G	15: 4,546,401 (GRCm39)	H135R	probably damaging	Het
Plxna2	A	T	1: 194,327,191 (GRCm39)	Y375F	probably damaging	Het
Prkca	C	T	11: 108,231,471 (GRCm39)		probably null	Het
Prkdc	A	G	16: 15,535,628 (GRCm39)	S1663G	probably benign	Het
Ptbp3	T	C	4: 59,514,384 (GRCm39)	T80A	probably benign	Het
Ptpn4	C	T	1: 119,610,261 (GRCm39)	V696I	possibly damaging	Het
Pygl	A	T	12: 70,263,342 (GRCm39)	W175R	possibly damaging	Het
Rftn1	A	G	17: 50,354,469 (GRCm39)	Y298H	probably damaging	Het
Rit2	A	G	18: 31,449,892 (GRCm39)		probably null	Het
Runx1t1	G	A	4: 13,846,935 (GRCm39)	G240R	probably damaging	Het
Scn10a	A	G	9: 119,493,845 (GRCm39)		probably null	Het
Serpina16	A	C	12: 103,638,691 (GRCm39)		probably null	Het
Slc17a3	A	T	13: 24,039,831 (GRCm39)	M290L		Het
Slc6a4	A	T	11: 76,901,522 (GRCm39)	M86L	probably benign	Het
Spag7	A	T	11: 70,556,139 (GRCm39)	V46E	probably benign	Het
Spata31h1	G	A	10: 82,127,131 (GRCm39)	R1960W	possibly damaging	Het
Sptlc1	T	C	13: 53,498,914 (GRCm39)	I271V	probably benign	Het
Stk17b	A	C	1: 53,796,674 (GRCm39)	H364Q	probably benign	Het
Strc	T	C	2: 121,209,933 (GRCm39)	H130R	probably damaging	Het
Stxbp1	T	A	2: 32,705,026 (GRCm39)	D148V	probably damaging	Het
Tirap	G	A	9: 35,100,225 (GRCm39)	P153L	probably damaging	Het
Tmco3	G	A	8: 13,369,605 (GRCm39)		probably null	Het
Tmem51	T	A	4: 141,759,094 (GRCm39)	D218V	probably damaging	Het
Trim40	A	T	17: 37,193,554 (GRCm39)	D218E	probably benign	Het
Ttc21b	T	C	2: 66,039,062 (GRCm39)	D934G	probably damaging	Het
Vmn2r26	T	C	6: 124,002,914 (GRCm39)	L108P	probably damaging	Het
Washc2	C	A	6: 116,204,379 (GRCm39)	P429Q	probably damaging	Het
Wipi1	A	G	11: 109,502,137 (GRCm39)	M1T	probably null	Het
Zfp438	A	G	18: 5,214,712 (GRCm39)	V82A	probably damaging	Het
Zfp853	G	C	5: 143,273,493 (GRCm39)	A724G	unknown	Het

Other mutations in Pkhd1l1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00233:Pkhd1l1	APN	15	44,340,982 (GRCm39)	missense	probably damaging	1.00
IGL00235:Pkhd1l1	APN	15	44,419,415 (GRCm39)	missense	probably damaging	1.00
IGL00264:Pkhd1l1	APN	15	44,354,425 (GRCm39)	missense	possibly damaging	0.67
IGL00537:Pkhd1l1	APN	15	44,455,388 (GRCm39)	missense	possibly damaging	0.88
IGL00537:Pkhd1l1	APN	15	44,363,443 (GRCm39)	missense	probably benign	0.42
IGL00580:Pkhd1l1	APN	15	44,449,870 (GRCm39)	missense	probably damaging	0.98
IGL01085:Pkhd1l1	APN	15	44,426,148 (GRCm39)	splice site	probably null
IGL01089:Pkhd1l1	APN	15	44,347,265 (GRCm39)	splice site	probably benign
IGL01094:Pkhd1l1	APN	15	44,410,325 (GRCm39)	missense	probably benign	0.09
IGL01120:Pkhd1l1	APN	15	44,368,708 (GRCm39)	critical splice donor site	probably null
IGL01307:Pkhd1l1	APN	15	44,393,425 (GRCm39)	missense	possibly damaging	0.82
IGL01362:Pkhd1l1	APN	15	44,396,378 (GRCm39)	missense	probably benign	0.00
IGL01403:Pkhd1l1	APN	15	44,347,229 (GRCm39)	nonsense	probably null
IGL01546:Pkhd1l1	APN	15	44,429,712 (GRCm39)	missense	probably damaging	1.00
IGL01596:Pkhd1l1	APN	15	44,392,806 (GRCm39)	missense	possibly damaging	0.50
IGL01696:Pkhd1l1	APN	15	44,392,747 (GRCm39)	missense	possibly damaging	0.79
IGL01844:Pkhd1l1	APN	15	44,362,796 (GRCm39)	splice site	probably benign
IGL02007:Pkhd1l1	APN	15	44,397,129 (GRCm39)	splice site	probably benign
IGL02041:Pkhd1l1	APN	15	44,356,452 (GRCm39)	splice site	probably null
IGL02171:Pkhd1l1	APN	15	44,379,542 (GRCm39)	missense	possibly damaging	0.80
IGL02206:Pkhd1l1	APN	15	44,376,245 (GRCm39)	missense	probably benign	0.08
IGL02266:Pkhd1l1	APN	15	44,437,010 (GRCm39)	missense	probably damaging	1.00
IGL02487:Pkhd1l1	APN	15	44,322,822 (GRCm39)	missense	possibly damaging	0.65
IGL02488:Pkhd1l1	APN	15	44,421,993 (GRCm39)	missense	probably benign
IGL02522:Pkhd1l1	APN	15	44,419,298 (GRCm39)	missense	possibly damaging	0.71
IGL02554:Pkhd1l1	APN	15	44,441,896 (GRCm39)	missense	probably damaging	1.00
IGL02566:Pkhd1l1	APN	15	44,389,450 (GRCm39)	splice site	probably null
IGL02602:Pkhd1l1	APN	15	44,421,327 (GRCm39)	missense	probably damaging	1.00
IGL02606:Pkhd1l1	APN	15	44,452,852 (GRCm39)	missense	probably benign	0.00
IGL02623:Pkhd1l1	APN	15	44,448,269 (GRCm39)	missense	probably damaging	1.00
IGL02634:Pkhd1l1	APN	15	44,403,063 (GRCm39)	missense	probably damaging	1.00
IGL02637:Pkhd1l1	APN	15	44,427,720 (GRCm39)	missense	probably damaging	1.00
IGL02651:Pkhd1l1	APN	15	44,347,210 (GRCm39)	missense	probably damaging	1.00
IGL02679:Pkhd1l1	APN	15	44,393,441 (GRCm39)	critical splice donor site	probably null
IGL02684:Pkhd1l1	APN	15	44,379,605 (GRCm39)	critical splice donor site	probably null
IGL02739:Pkhd1l1	APN	15	44,404,346 (GRCm39)	missense	probably benign	0.11
IGL02831:Pkhd1l1	APN	15	44,364,889 (GRCm39)	missense	probably benign	0.18
IGL02839:Pkhd1l1	APN	15	44,392,939 (GRCm39)	missense	probably damaging	0.98
IGL02944:Pkhd1l1	APN	15	44,364,927 (GRCm39)	missense	probably damaging	1.00
IGL02957:Pkhd1l1	APN	15	44,376,304 (GRCm39)	missense	probably damaging	1.00
IGL03001:Pkhd1l1	APN	15	44,421,400 (GRCm39)	missense	probably damaging	1.00
IGL03030:Pkhd1l1	APN	15	44,460,298 (GRCm39)	missense	probably benign	0.41
IGL03030:Pkhd1l1	APN	15	44,455,372 (GRCm39)	missense	probably benign	0.00
IGL03132:Pkhd1l1	APN	15	44,438,013 (GRCm39)	missense	probably damaging	1.00
IGL03194:Pkhd1l1	APN	15	44,381,531 (GRCm39)	missense	probably damaging	1.00
IGL03219:Pkhd1l1	APN	15	44,460,291 (GRCm39)	missense	possibly damaging	0.62
IGL03236:Pkhd1l1	APN	15	44,445,222 (GRCm39)	missense	probably damaging	1.00
IGL03266:Pkhd1l1	APN	15	44,402,348 (GRCm39)	missense	probably damaging	1.00
IGL03276:Pkhd1l1	APN	15	44,457,980 (GRCm39)	missense	possibly damaging	0.77
IGL03284:Pkhd1l1	APN	15	44,410,914 (GRCm39)	splice site	probably benign
IGL03377:Pkhd1l1	APN	15	44,347,747 (GRCm39)	splice site	probably null
R0310_Pkhd1l1_251	UTSW	15	44,386,134 (GRCm39)	splice site	probably benign
R0344_Pkhd1l1_462	UTSW	15	44,460,407 (GRCm39)	missense	probably benign	0.15
R1737_Pkhd1l1_815	UTSW	15	44,410,905 (GRCm39)	critical splice donor site	probably null
R5049_Pkhd1l1_556	UTSW	15	44,321,012 (GRCm39)	missense	probably benign	0.00
K7371:Pkhd1l1	UTSW	15	44,363,463 (GRCm39)	missense	possibly damaging	0.94
K7371:Pkhd1l1	UTSW	15	44,400,838 (GRCm39)	missense	possibly damaging	0.67
N/A - 287:Pkhd1l1	UTSW	15	44,445,654 (GRCm39)	missense	probably damaging	0.98
P4717OSA:Pkhd1l1	UTSW	15	44,391,643 (GRCm39)	missense	probably damaging	1.00
P4717OSA:Pkhd1l1	UTSW	15	44,386,895 (GRCm39)	missense	probably benign	0.17
R0007:Pkhd1l1	UTSW	15	44,437,794 (GRCm39)	splice site	probably benign
R0020:Pkhd1l1	UTSW	15	44,420,268 (GRCm39)	missense	probably damaging	1.00
R0034:Pkhd1l1	UTSW	15	44,367,405 (GRCm39)	missense	probably benign	0.00
R0040:Pkhd1l1	UTSW	15	44,437,021 (GRCm39)	missense	probably damaging	1.00
R0050:Pkhd1l1	UTSW	15	44,437,203 (GRCm39)	missense	possibly damaging	0.79
R0050:Pkhd1l1	UTSW	15	44,437,203 (GRCm39)	missense	possibly damaging	0.79
R0063:Pkhd1l1	UTSW	15	44,392,633 (GRCm39)	missense	probably damaging	1.00
R0063:Pkhd1l1	UTSW	15	44,392,633 (GRCm39)	missense	probably damaging	1.00
R0086:Pkhd1l1	UTSW	15	44,419,404 (GRCm39)	missense	possibly damaging	0.94
R0103:Pkhd1l1	UTSW	15	44,460,537 (GRCm39)	missense	probably benign
R0103:Pkhd1l1	UTSW	15	44,460,537 (GRCm39)	missense	probably benign
R0127:Pkhd1l1	UTSW	15	44,418,001 (GRCm39)	missense	probably damaging	0.99
R0226:Pkhd1l1	UTSW	15	44,390,180 (GRCm39)	missense	possibly damaging	0.65
R0268:Pkhd1l1	UTSW	15	44,460,407 (GRCm39)	missense	probably benign	0.15
R0294:Pkhd1l1	UTSW	15	44,423,831 (GRCm39)	missense	probably benign	0.05
R0310:Pkhd1l1	UTSW	15	44,386,134 (GRCm39)	splice site	probably benign
R0344:Pkhd1l1	UTSW	15	44,460,407 (GRCm39)	missense	probably benign	0.15
R0449:Pkhd1l1	UTSW	15	44,364,915 (GRCm39)	missense	probably damaging	1.00
R0492:Pkhd1l1	UTSW	15	44,383,086 (GRCm39)	missense	probably benign	0.03
R0505:Pkhd1l1	UTSW	15	44,452,814 (GRCm39)	missense	probably damaging	1.00
R0529:Pkhd1l1	UTSW	15	44,390,150 (GRCm39)	missense	possibly damaging	0.62
R0543:Pkhd1l1	UTSW	15	44,386,887 (GRCm39)	critical splice acceptor site	probably null
R0552:Pkhd1l1	UTSW	15	44,352,942 (GRCm39)	missense	probably damaging	0.98
R0558:Pkhd1l1	UTSW	15	44,347,820 (GRCm39)	missense	probably damaging	0.97
R0609:Pkhd1l1	UTSW	15	44,330,820 (GRCm39)	missense	possibly damaging	0.48
R0619:Pkhd1l1	UTSW	15	44,347,234 (GRCm39)	missense	probably damaging	1.00
R0727:Pkhd1l1	UTSW	15	44,399,184 (GRCm39)	missense	possibly damaging	0.80
R0787:Pkhd1l1	UTSW	15	44,392,660 (GRCm39)	missense	probably damaging	1.00
R0846:Pkhd1l1	UTSW	15	44,358,993 (GRCm39)	missense	probably damaging	1.00
R0909:Pkhd1l1	UTSW	15	44,402,279 (GRCm39)	splice site	probably null
R0942:Pkhd1l1	UTSW	15	44,396,355 (GRCm39)	missense	probably benign	0.01
R1056:Pkhd1l1	UTSW	15	44,455,360 (GRCm39)	missense	probably damaging	1.00
R1147:Pkhd1l1	UTSW	15	44,400,837 (GRCm39)	missense	probably null	0.15
R1147:Pkhd1l1	UTSW	15	44,400,837 (GRCm39)	missense	probably null	0.15
R1187:Pkhd1l1	UTSW	15	44,361,447 (GRCm39)	missense	possibly damaging	0.65
R1328:Pkhd1l1	UTSW	15	44,361,392 (GRCm39)	missense	probably benign	0.01
R1331:Pkhd1l1	UTSW	15	44,452,993 (GRCm39)	missense	probably damaging	1.00
R1331:Pkhd1l1	UTSW	15	44,368,943 (GRCm39)	missense	probably damaging	1.00
R1332:Pkhd1l1	UTSW	15	44,368,943 (GRCm39)	missense	probably damaging	1.00
R1335:Pkhd1l1	UTSW	15	44,368,943 (GRCm39)	missense	probably damaging	1.00
R1338:Pkhd1l1	UTSW	15	44,390,120 (GRCm39)	missense	probably damaging	1.00
R1440:Pkhd1l1	UTSW	15	44,404,384 (GRCm39)	splice site	probably benign
R1445:Pkhd1l1	UTSW	15	44,369,040 (GRCm39)	missense	probably benign	0.32
R1458:Pkhd1l1	UTSW	15	44,379,511 (GRCm39)	missense	probably benign	0.01
R1469:Pkhd1l1	UTSW	15	44,400,282 (GRCm39)	missense	probably benign	0.45
R1469:Pkhd1l1	UTSW	15	44,400,282 (GRCm39)	missense	probably benign	0.45
R1500:Pkhd1l1	UTSW	15	44,408,890 (GRCm39)	missense	probably damaging	1.00
R1528:Pkhd1l1	UTSW	15	44,390,120 (GRCm39)	missense	probably damaging	1.00
R1542:Pkhd1l1	UTSW	15	44,391,587 (GRCm39)	missense	probably benign	0.44
R1568:Pkhd1l1	UTSW	15	44,408,897 (GRCm39)	splice site	probably null
R1571:Pkhd1l1	UTSW	15	44,390,237 (GRCm39)	missense	probably benign
R1572:Pkhd1l1	UTSW	15	44,406,869 (GRCm39)	missense	probably benign	0.01
R1604:Pkhd1l1	UTSW	15	44,330,763 (GRCm39)	nonsense	probably null
R1638:Pkhd1l1	UTSW	15	44,460,513 (GRCm39)	missense	probably benign	0.06
R1639:Pkhd1l1	UTSW	15	44,404,351 (GRCm39)	missense	probably damaging	0.99
R1737:Pkhd1l1	UTSW	15	44,410,905 (GRCm39)	critical splice donor site	probably null
R1816:Pkhd1l1	UTSW	15	44,391,635 (GRCm39)	missense	possibly damaging	0.91
R1826:Pkhd1l1	UTSW	15	44,366,741 (GRCm39)	missense	possibly damaging	0.75
R1880:Pkhd1l1	UTSW	15	44,388,638 (GRCm39)	missense	probably benign	0.13
R1930:Pkhd1l1	UTSW	15	44,366,733 (GRCm39)	missense	possibly damaging	0.69
R1933:Pkhd1l1	UTSW	15	44,404,280 (GRCm39)	missense	possibly damaging	0.48
R1938:Pkhd1l1	UTSW	15	44,363,434 (GRCm39)	missense	probably benign
R1975:Pkhd1l1	UTSW	15	44,393,109 (GRCm39)	missense	probably damaging	1.00
R1999:Pkhd1l1	UTSW	15	44,363,378 (GRCm39)	splice site	probably null
R2037:Pkhd1l1	UTSW	15	44,431,617 (GRCm39)	splice site	probably null
R2045:Pkhd1l1	UTSW	15	44,343,050 (GRCm39)	missense	probably damaging	1.00
R2049:Pkhd1l1	UTSW	15	44,445,137 (GRCm39)	missense	probably damaging	1.00
R2049:Pkhd1l1	UTSW	15	44,410,909 (GRCm39)	splice site	probably benign
R2063:Pkhd1l1	UTSW	15	44,414,148 (GRCm39)	missense	possibly damaging	0.69
R2072:Pkhd1l1	UTSW	15	44,422,035 (GRCm39)	missense	probably damaging	1.00
R2073:Pkhd1l1	UTSW	15	44,422,035 (GRCm39)	missense	probably damaging	1.00
R2075:Pkhd1l1	UTSW	15	44,422,035 (GRCm39)	missense	probably damaging	1.00
R2078:Pkhd1l1	UTSW	15	44,391,163 (GRCm39)	missense	probably benign	0.08
R2116:Pkhd1l1	UTSW	15	44,432,878 (GRCm39)	missense	probably damaging	0.97
R2133:Pkhd1l1	UTSW	15	44,379,581 (GRCm39)	missense	possibly damaging	0.91
R2138:Pkhd1l1	UTSW	15	44,364,853 (GRCm39)	missense	probably damaging	1.00
R2139:Pkhd1l1	UTSW	15	44,393,214 (GRCm39)	missense	possibly damaging	0.46
R2145:Pkhd1l1	UTSW	15	44,376,273 (GRCm39)	splice site	probably null
R2150:Pkhd1l1	UTSW	15	44,363,378 (GRCm39)	splice site	probably null
R2177:Pkhd1l1	UTSW	15	44,322,791 (GRCm39)	missense	probably benign
R2184:Pkhd1l1	UTSW	15	44,362,692 (GRCm39)	missense	possibly damaging	0.89
R2216:Pkhd1l1	UTSW	15	44,437,291 (GRCm39)	missense	probably damaging	1.00
R2226:Pkhd1l1	UTSW	15	44,376,188 (GRCm39)	missense	possibly damaging	0.79
R2227:Pkhd1l1	UTSW	15	44,376,188 (GRCm39)	missense	possibly damaging	0.79
R2243:Pkhd1l1	UTSW	15	44,410,323 (GRCm39)	missense	probably damaging	1.00
R2290:Pkhd1l1	UTSW	15	44,391,646 (GRCm39)	missense	probably benign	0.03
R2294:Pkhd1l1	UTSW	15	44,343,003 (GRCm39)	missense	probably damaging	0.99
R2346:Pkhd1l1	UTSW	15	44,423,902 (GRCm39)	missense	possibly damaging	0.82
R2356:Pkhd1l1	UTSW	15	44,396,415 (GRCm39)	missense	probably benign	0.00
R2386:Pkhd1l1	UTSW	15	44,391,574 (GRCm39)	missense	probably benign	0.00
R2404:Pkhd1l1	UTSW	15	44,414,216 (GRCm39)	missense	probably damaging	1.00
R2504:Pkhd1l1	UTSW	15	44,348,824 (GRCm39)	missense	probably damaging	0.97
R2679:Pkhd1l1	UTSW	15	44,408,782 (GRCm39)	missense	probably damaging	0.99
R2860:Pkhd1l1	UTSW	15	44,404,267 (GRCm39)	missense	probably damaging	1.00
R2861:Pkhd1l1	UTSW	15	44,404,267 (GRCm39)	missense	probably damaging	1.00
R2862:Pkhd1l1	UTSW	15	44,404,267 (GRCm39)	missense	probably damaging	1.00
R2972:Pkhd1l1	UTSW	15	44,410,644 (GRCm39)	missense	possibly damaging	0.65
R3016:Pkhd1l1	UTSW	15	44,408,766 (GRCm39)	missense	probably benign	0.02
R3162:Pkhd1l1	UTSW	15	44,368,924 (GRCm39)	missense	probably damaging	1.00
R3162:Pkhd1l1	UTSW	15	44,368,924 (GRCm39)	missense	probably damaging	1.00
R3416:Pkhd1l1	UTSW	15	44,410,760 (GRCm39)	missense	probably damaging	1.00
R3623:Pkhd1l1	UTSW	15	44,390,265 (GRCm39)	missense	probably damaging	1.00
R3687:Pkhd1l1	UTSW	15	44,409,983 (GRCm39)	missense	probably benign	0.17
R3755:Pkhd1l1	UTSW	15	44,452,802 (GRCm39)	missense	probably damaging	1.00
R3776:Pkhd1l1	UTSW	15	44,378,371 (GRCm39)	critical splice donor site	probably null
R3803:Pkhd1l1	UTSW	15	44,356,531 (GRCm39)	missense	probably benign	0.25
R3942:Pkhd1l1	UTSW	15	44,455,422 (GRCm39)	critical splice donor site	probably null
R4010:Pkhd1l1	UTSW	15	44,392,496 (GRCm39)	missense	possibly damaging	0.80
R4049:Pkhd1l1	UTSW	15	44,361,953 (GRCm39)	missense	probably damaging	1.00
R4059:Pkhd1l1	UTSW	15	44,414,156 (GRCm39)	missense	probably benign	0.01
R4179:Pkhd1l1	UTSW	15	44,387,045 (GRCm39)	missense	probably benign	0.45
R4184:Pkhd1l1	UTSW	15	44,455,302 (GRCm39)	missense	probably benign	0.00
R4369:Pkhd1l1	UTSW	15	44,368,949 (GRCm39)	missense	probably benign	0.00
R4462:Pkhd1l1	UTSW	15	44,445,200 (GRCm39)	missense	probably damaging	1.00
R4551:Pkhd1l1	UTSW	15	44,414,281 (GRCm39)	missense	probably damaging	1.00
R4618:Pkhd1l1	UTSW	15	44,403,078 (GRCm39)	missense	probably damaging	1.00
R4632:Pkhd1l1	UTSW	15	44,347,796 (GRCm39)	missense	probably benign	0.07
R4657:Pkhd1l1	UTSW	15	44,410,743 (GRCm39)	missense	probably damaging	1.00
R4716:Pkhd1l1	UTSW	15	44,419,428 (GRCm39)	missense	probably damaging	1.00
R4788:Pkhd1l1	UTSW	15	44,361,417 (GRCm39)	missense	probably damaging	0.99
R4828:Pkhd1l1	UTSW	15	44,392,801 (GRCm39)	missense	possibly damaging	0.55
R4858:Pkhd1l1	UTSW	15	44,354,497 (GRCm39)	missense	probably damaging	0.99
R4860:Pkhd1l1	UTSW	15	44,400,774 (GRCm39)	missense	possibly damaging	0.77
R4860:Pkhd1l1	UTSW	15	44,400,774 (GRCm39)	missense	possibly damaging	0.77
R4951:Pkhd1l1	UTSW	15	44,397,287 (GRCm39)	missense	possibly damaging	0.82
R4963:Pkhd1l1	UTSW	15	44,367,421 (GRCm39)	missense	probably benign	0.00
R5023:Pkhd1l1	UTSW	15	44,391,587 (GRCm39)	missense	probably benign	0.44
R5023:Pkhd1l1	UTSW	15	44,445,623 (GRCm39)	missense	probably benign	0.00
R5035:Pkhd1l1	UTSW	15	44,431,720 (GRCm39)	missense	probably damaging	1.00
R5049:Pkhd1l1	UTSW	15	44,321,012 (GRCm39)	missense	probably benign	0.00
R5065:Pkhd1l1	UTSW	15	44,445,689 (GRCm39)	missense	possibly damaging	0.68
R5089:Pkhd1l1	UTSW	15	44,455,283 (GRCm39)	missense	probably benign	0.01
R5151:Pkhd1l1	UTSW	15	44,368,705 (GRCm39)	missense	probably benign	0.00
R5153:Pkhd1l1	UTSW	15	44,368,705 (GRCm39)	missense	probably benign	0.00
R5189:Pkhd1l1	UTSW	15	44,410,544 (GRCm39)	missense	probably damaging	1.00
R5204:Pkhd1l1	UTSW	15	44,410,437 (GRCm39)	missense	possibly damaging	0.51
R5216:Pkhd1l1	UTSW	15	44,359,043 (GRCm39)	nonsense	probably null
R5286:Pkhd1l1	UTSW	15	44,378,368 (GRCm39)	nonsense	probably null
R5292:Pkhd1l1	UTSW	15	44,392,962 (GRCm39)	missense	probably damaging	1.00
R5293:Pkhd1l1	UTSW	15	44,399,146 (GRCm39)	missense	probably benign	0.01
R5298:Pkhd1l1	UTSW	15	44,367,442 (GRCm39)	missense	probably benign	0.00
R5327:Pkhd1l1	UTSW	15	44,410,258 (GRCm39)	missense	probably damaging	1.00
R5346:Pkhd1l1	UTSW	15	44,404,363 (GRCm39)	missense	probably damaging	1.00
R5481:Pkhd1l1	UTSW	15	44,422,042 (GRCm39)	missense	probably damaging	1.00
R5645:Pkhd1l1	UTSW	15	44,396,388 (GRCm39)	missense	probably benign	0.18
R5718:Pkhd1l1	UTSW	15	44,408,813 (GRCm39)	missense	probably damaging	1.00
R5809:Pkhd1l1	UTSW	15	44,383,103 (GRCm39)	missense	probably benign	0.03
R5816:Pkhd1l1	UTSW	15	44,429,718 (GRCm39)	missense	probably benign	0.01
R5854:Pkhd1l1	UTSW	15	44,445,186 (GRCm39)	missense	probably damaging	1.00
R5876:Pkhd1l1	UTSW	15	44,441,984 (GRCm39)	missense	possibly damaging	0.51
R5909:Pkhd1l1	UTSW	15	44,390,159 (GRCm39)	missense	probably damaging	1.00
R5950:Pkhd1l1	UTSW	15	44,396,361 (GRCm39)	missense	probably benign	0.00
R5961:Pkhd1l1	UTSW	15	44,322,859 (GRCm39)	missense	probably damaging	1.00
R5972:Pkhd1l1	UTSW	15	44,408,812 (GRCm39)	missense	probably damaging	1.00
R5975:Pkhd1l1	UTSW	15	44,389,384 (GRCm39)	missense	probably damaging	1.00
R5982:Pkhd1l1	UTSW	15	44,352,900 (GRCm39)	splice site	probably null
R6066:Pkhd1l1	UTSW	15	44,391,525 (GRCm39)	missense	probably damaging	0.99
R6122:Pkhd1l1	UTSW	15	44,421,336 (GRCm39)	missense	probably damaging	1.00
R6248:Pkhd1l1	UTSW	15	44,392,955 (GRCm39)	missense	probably benign
R6294:Pkhd1l1	UTSW	15	44,433,424 (GRCm39)	missense	probably damaging	1.00
R6301:Pkhd1l1	UTSW	15	44,452,921 (GRCm39)	missense	probably damaging	0.99
R6526:Pkhd1l1	UTSW	15	44,361,485 (GRCm39)	critical splice donor site	probably null
R6707:Pkhd1l1	UTSW	15	44,392,539 (GRCm39)	missense	probably benign
R6736:Pkhd1l1	UTSW	15	44,421,336 (GRCm39)	missense	probably damaging	1.00
R6753:Pkhd1l1	UTSW	15	44,453,059 (GRCm39)	missense	probably benign	0.45
R6815:Pkhd1l1	UTSW	15	44,426,051 (GRCm39)	missense	probably damaging	1.00
R6874:Pkhd1l1	UTSW	15	44,452,923 (GRCm39)	missense	probably benign	0.06
R6942:Pkhd1l1	UTSW	15	44,386,025 (GRCm39)	missense	probably damaging	1.00
R6970:Pkhd1l1	UTSW	15	44,375,070 (GRCm39)	missense	possibly damaging	0.61
R6982:Pkhd1l1	UTSW	15	44,429,664 (GRCm39)	missense	probably damaging	0.97
R7103:Pkhd1l1	UTSW	15	44,437,027 (GRCm39)	missense	probably benign	0.02
R7116:Pkhd1l1	UTSW	15	44,421,372 (GRCm39)	missense	probably benign	0.00
R7135:Pkhd1l1	UTSW	15	44,448,374 (GRCm39)	critical splice donor site	probably null
R7143:Pkhd1l1	UTSW	15	44,437,033 (GRCm39)	missense	possibly damaging	0.93
R7177:Pkhd1l1	UTSW	15	44,330,800 (GRCm39)	missense	probably damaging	1.00
R7194:Pkhd1l1	UTSW	15	44,392,512 (GRCm39)	missense	probably damaging	1.00
R7204:Pkhd1l1	UTSW	15	44,386,949 (GRCm39)	missense	possibly damaging	0.90
R7215:Pkhd1l1	UTSW	15	44,391,559 (GRCm39)	missense	possibly damaging	0.78
R7218:Pkhd1l1	UTSW	15	44,386,091 (GRCm39)	missense	possibly damaging	0.49
R7225:Pkhd1l1	UTSW	15	44,410,337 (GRCm39)	missense	probably damaging	1.00
R7292:Pkhd1l1	UTSW	15	44,361,986 (GRCm39)	missense	probably benign
R7304:Pkhd1l1	UTSW	15	44,361,878 (GRCm39)	missense	possibly damaging	0.94
R7349:Pkhd1l1	UTSW	15	44,378,350 (GRCm39)	missense	probably damaging	1.00
R7359:Pkhd1l1	UTSW	15	44,452,882 (GRCm39)	missense	probably damaging	1.00
R7407:Pkhd1l1	UTSW	15	44,458,407 (GRCm39)	missense	possibly damaging	0.75
R7475:Pkhd1l1	UTSW	15	44,368,581 (GRCm39)	nonsense	probably null
R7481:Pkhd1l1	UTSW	15	44,376,307 (GRCm39)	missense	probably benign
R7554:Pkhd1l1	UTSW	15	44,358,866 (GRCm39)	missense	probably damaging	1.00
R7555:Pkhd1l1	UTSW	15	44,414,157 (GRCm39)	missense	possibly damaging	0.51
R7562:Pkhd1l1	UTSW	15	44,378,326 (GRCm39)	missense	possibly damaging	0.68
R7583:Pkhd1l1	UTSW	15	44,431,760 (GRCm39)	critical splice donor site	probably null
R7595:Pkhd1l1	UTSW	15	44,358,917 (GRCm39)	missense	probably damaging	1.00
R7749:Pkhd1l1	UTSW	15	44,391,133 (GRCm39)	missense	probably benign	0.00
R7754:Pkhd1l1	UTSW	15	44,449,804 (GRCm39)	missense	possibly damaging	0.94
R7761:Pkhd1l1	UTSW	15	44,393,280 (GRCm39)	missense	probably benign	0.00
R7774:Pkhd1l1	UTSW	15	44,404,303 (GRCm39)	missense	probably benign	0.03
R7785:Pkhd1l1	UTSW	15	44,406,965 (GRCm39)	missense	probably damaging	1.00
R7790:Pkhd1l1	UTSW	15	44,441,977 (GRCm39)	missense	probably damaging	1.00
R7804:Pkhd1l1	UTSW	15	44,460,534 (GRCm39)	nonsense	probably null
R7864:Pkhd1l1	UTSW	15	44,389,449 (GRCm39)	critical splice donor site	probably null
R7883:Pkhd1l1	UTSW	15	44,392,522 (GRCm39)	missense	probably damaging	1.00
R8031:Pkhd1l1	UTSW	15	44,376,230 (GRCm39)	missense	probably damaging	1.00
R8128:Pkhd1l1	UTSW	15	44,361,449 (GRCm39)	missense	possibly damaging	0.94
R8142:Pkhd1l1	UTSW	15	44,378,327 (GRCm39)	missense	probably benign	0.00
R8150:Pkhd1l1	UTSW	15	44,410,055 (GRCm39)	missense	possibly damaging	0.68
R8209:Pkhd1l1	UTSW	15	44,437,803 (GRCm39)	missense	possibly damaging	0.46
R8212:Pkhd1l1	UTSW	15	44,362,696 (GRCm39)	missense	probably benign	0.12
R8226:Pkhd1l1	UTSW	15	44,437,803 (GRCm39)	missense	possibly damaging	0.46
R8248:Pkhd1l1	UTSW	15	44,406,942 (GRCm39)	missense	probably damaging	0.99
R8299:Pkhd1l1	UTSW	15	44,445,330 (GRCm39)	missense	probably benign	0.26
R8425:Pkhd1l1	UTSW	15	44,437,911 (GRCm39)	missense	probably benign	0.01
R8485:Pkhd1l1	UTSW	15	44,423,796 (GRCm39)	missense	probably damaging	0.98
R8486:Pkhd1l1	UTSW	15	44,410,812 (GRCm39)	missense	probably damaging	1.00
R8701:Pkhd1l1	UTSW	15	44,438,079 (GRCm39)	missense	probably damaging	1.00
R8709:Pkhd1l1	UTSW	15	44,381,570 (GRCm39)	missense	probably benign	0.01
R8777:Pkhd1l1	UTSW	15	44,361,967 (GRCm39)	missense	probably damaging	1.00
R8777-TAIL:Pkhd1l1	UTSW	15	44,361,967 (GRCm39)	missense	probably damaging	1.00
R8845:Pkhd1l1	UTSW	15	44,368,650 (GRCm39)	missense	probably benign	0.30
R8846:Pkhd1l1	UTSW	15	44,410,358 (GRCm39)	nonsense	probably null
R8863:Pkhd1l1	UTSW	15	44,433,382 (GRCm39)	nonsense	probably null
R8917:Pkhd1l1	UTSW	15	44,396,403 (GRCm39)	missense	probably benign	0.04
R8936:Pkhd1l1	UTSW	15	44,402,312 (GRCm39)	missense	possibly damaging	0.94
R8962:Pkhd1l1	UTSW	15	44,400,291 (GRCm39)	missense	probably damaging	1.00
R8971:Pkhd1l1	UTSW	15	44,392,915 (GRCm39)	missense	possibly damaging	0.68
R8973:Pkhd1l1	UTSW	15	44,449,833 (GRCm39)	missense	probably damaging	1.00
R8982:Pkhd1l1	UTSW	15	44,387,069 (GRCm39)	nonsense	probably null
R8994:Pkhd1l1	UTSW	15	44,410,499 (GRCm39)	missense	probably damaging	0.99
R9004:Pkhd1l1	UTSW	15	44,406,768 (GRCm39)	missense	probably benign	0.16
R9064:Pkhd1l1	UTSW	15	44,426,038 (GRCm39)	missense	possibly damaging	0.93
R9173:Pkhd1l1	UTSW	15	44,384,152 (GRCm39)	missense	probably benign	0.09
R9185:Pkhd1l1	UTSW	15	44,453,019 (GRCm39)	missense	probably benign	0.01
R9213:Pkhd1l1	UTSW	15	44,358,874 (GRCm39)	missense	probably damaging	1.00
R9218:Pkhd1l1	UTSW	15	44,384,122 (GRCm39)	missense	possibly damaging	0.90
R9256:Pkhd1l1	UTSW	15	44,397,290 (GRCm39)	critical splice donor site	probably null
R9291:Pkhd1l1	UTSW	15	44,433,372 (GRCm39)	missense	probably damaging	1.00
R9309:Pkhd1l1	UTSW	15	44,400,289 (GRCm39)	missense	probably benign	0.00
R9319:Pkhd1l1	UTSW	15	44,392,974 (GRCm39)	missense	possibly damaging	0.46
R9339:Pkhd1l1	UTSW	15	44,452,949 (GRCm39)	missense	probably damaging	1.00
R9366:Pkhd1l1	UTSW	15	44,410,308 (GRCm39)	missense	probably benign	0.03
R9444:Pkhd1l1	UTSW	15	44,418,053 (GRCm39)	missense	probably benign	0.00
R9464:Pkhd1l1	UTSW	15	44,343,009 (GRCm39)	missense	probably damaging	1.00
R9525:Pkhd1l1	UTSW	15	44,448,322 (GRCm39)	missense	possibly damaging	0.88
R9542:Pkhd1l1	UTSW	15	44,410,284 (GRCm39)	missense	probably benign	0.12
R9544:Pkhd1l1	UTSW	15	44,410,239 (GRCm39)	missense	probably damaging	1.00
R9608:Pkhd1l1	UTSW	15	44,442,029 (GRCm39)	missense	possibly damaging	0.65
R9673:Pkhd1l1	UTSW	15	44,386,901 (GRCm39)	missense	probably benign	0.22
R9771:Pkhd1l1	UTSW	15	44,358,883 (GRCm39)	missense	probably benign
R9792:Pkhd1l1	UTSW	15	44,406,983 (GRCm39)	missense	probably benign	0.00
R9793:Pkhd1l1	UTSW	15	44,406,983 (GRCm39)	missense	probably benign	0.00
R9795:Pkhd1l1	UTSW	15	44,406,983 (GRCm39)	missense	probably benign	0.00
RF006:Pkhd1l1	UTSW	15	44,421,903 (GRCm39)	critical splice acceptor site	probably benign
RF006:Pkhd1l1	UTSW	15	44,366,634 (GRCm39)	missense	probably benign	0.03
RF008:Pkhd1l1	UTSW	15	44,421,901 (GRCm39)	critical splice acceptor site	probably benign
RF012:Pkhd1l1	UTSW	15	44,421,901 (GRCm39)	critical splice acceptor site	probably benign
RF019:Pkhd1l1	UTSW	15	44,421,903 (GRCm39)	critical splice acceptor site	probably benign
RF030:Pkhd1l1	UTSW	15	44,421,898 (GRCm39)	critical splice acceptor site	probably benign
RF033:Pkhd1l1	UTSW	15	44,421,902 (GRCm39)	critical splice acceptor site	probably benign
RF038:Pkhd1l1	UTSW	15	44,421,899 (GRCm39)	critical splice acceptor site	probably benign
RF046:Pkhd1l1	UTSW	15	44,421,891 (GRCm39)	critical splice acceptor site	probably benign
X0027:Pkhd1l1	UTSW	15	44,455,362 (GRCm39)	missense	probably damaging	0.99
Z1177:Pkhd1l1	UTSW	15	44,441,974 (GRCm39)	missense	probably damaging	0.99
Z1177:Pkhd1l1	UTSW	15	44,436,972 (GRCm39)	missense	probably damaging	0.97

Predicted Primers

PCR Primer
(F):5'- TTGGAAAACAGTCATATAGAGGCAC -3'
(R):5'- TGACATGACTCAAAATGGCAAGC -3'

Sequencing Primer
(F):5'- CAGTCATATAGAGGCACAACAAATAG -3'
(R):5'- GACTCAAAATGGCAAGCACTTTTC -3'

Posted On

2019-06-26