Mutagenetix > Incidental Mutation

Incidental Mutation 'R7312:Dennd2d'

567651

Institutional Source

Beutler Lab

Gene Symbol

Dennd2d

Ensembl Gene

ENSMUSG00000027901

Gene Name

DENN domain containing 2D

Synonyms

2010308M01Rik

MMRRC Submission

045410-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.143) question?

Stock #

R7312 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

106389745-106410346 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 106398579 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Methionine to Lysine at position 188 (M188K)

Ref Sequence

ENSEMBL: ENSMUSP00000138462 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029508] [ENSMUST00000149225] [ENSMUST00000183271]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000029508
AA Change: M178K

PolyPhen 2 Score 0.329 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000029508
Gene: ENSMUSG00000027901
AA Change: M178K

Domain	Start	End	E-Value	Type
low complexity region	3	17	N/A	INTRINSIC
uDENN	47	139	4.15e-27	SMART
DENN	146	330	8.1e-71	SMART
dDENN	368	435	3.38e-18	SMART
low complexity region	447	461	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000149225

Predicted Effect

probably benign
Transcript: ENSMUST00000183271
AA Change: M188K

PolyPhen 2 Score 0.380 (Sensitivity: 0.90; Specificity: 0.89)

SMART Domains

Protein: ENSMUSP00000138462
Gene: ENSMUSG00000027901
AA Change: M188K

Domain	Start	End	E-Value	Type
low complexity region	15	28	N/A	INTRINSIC
uDENN	57	149	4.15e-27	SMART
DENN	156	340	8.1e-71	SMART
dDENN	378	445	3.38e-18	SMART
low complexity region	457	471	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (60/60)

Allele List at MGI

Other mutations in this stock

Total: 62 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933434E20Rik	T	C	3: 89,969,021 (GRCm39)	S215P	probably benign	Het
Ano2	C	T	6: 126,016,460 (GRCm39)	Q998*	probably null	Het
Atg9a	A	T	1: 75,164,736 (GRCm39)	V76E	probably damaging	Het
Cacna1c	T	C	6: 119,034,172 (GRCm39)	I118M		Het
Cacna1g	T	A	11: 94,323,383 (GRCm39)	I1274F	probably damaging	Het
Cd300lg	C	T	11: 101,937,767 (GRCm39)	A199V	probably benign	Het
Cfap61	C	T	2: 145,887,390 (GRCm39)	R612*	probably null	Het
Cpeb4	A	T	11: 31,881,417 (GRCm39)	Y692F	probably damaging	Het
Dcun1d1	A	G	3: 35,951,940 (GRCm39)		probably null	Het
Dmgdh	A	G	13: 93,845,354 (GRCm39)		probably null	Het
Efl1	T	A	7: 82,330,652 (GRCm39)	M275K	probably benign	Het
Erp29	G	T	5: 121,583,392 (GRCm39)	A178D	probably benign	Het
Fbn1	T	C	2: 125,308,594 (GRCm39)	N156S	possibly damaging	Het
Frrs1	C	T	3: 116,675,426 (GRCm39)	T118I	probably damaging	Het
Frrs1l	A	G	4: 56,968,230 (GRCm39)	W181R	probably benign	Het
Gprc5b	C	A	7: 118,583,482 (GRCm39)	W129L	probably damaging	Het
Hoxc9	A	G	15: 102,890,593 (GRCm39)	H170R	probably benign	Het
Il12rb2	C	T	6: 67,333,617 (GRCm39)	D221N	probably benign	Het
Lmo1	T	C	7: 108,742,819 (GRCm39)	N28S	probably benign	Het
Lrrfip2	T	A	9: 111,006,525 (GRCm39)		probably null	Het
Macf1	A	T	4: 123,400,130 (GRCm39)	F722I	probably damaging	Het
Mical1	T	C	10: 41,355,772 (GRCm39)		probably null	Het
Mtcl3	A	G	10: 29,073,240 (GRCm39)	Y844C	probably damaging	Het
Mtmr11	C	T	3: 96,071,855 (GRCm39)	T223M	possibly damaging	Het
Mup21	A	G	4: 62,068,468 (GRCm39)	V66A	probably benign	Het
Nav2	C	A	7: 49,111,672 (GRCm39)	A726D	possibly damaging	Het
Nbeal1	G	C	1: 60,276,310 (GRCm39)	V684L	probably benign	Het
Nudt21	A	T	8: 94,746,227 (GRCm39)	V157D	probably benign	Het
Numa1	T	C	7: 101,639,806 (GRCm39)	I52T	possibly damaging	Het
Obscn	T	C	11: 58,946,442 (GRCm39)	D4421G	probably benign	Het
Oog3	T	C	4: 143,886,801 (GRCm39)	I106M	probably benign	Het
Or10g9	A	T	9: 39,912,106 (GRCm39)	V139E	probably benign	Het
Or2g25	T	C	17: 37,970,403 (GRCm39)	T274A	possibly damaging	Het
Or2z9	T	C	8: 72,853,793 (GRCm39)	L63P	probably damaging	Het
Or51f1	T	A	7: 102,505,706 (GRCm39)	Y261F	probably damaging	Het
Or5w20	T	G	2: 87,726,755 (GRCm39)	C71G	possibly damaging	Het
Orai2	T	A	5: 136,179,437 (GRCm39)	I199F	probably damaging	Het
P2rx5	C	A	11: 73,055,692 (GRCm39)	L50M	probably damaging	Het
Pdia2	T	C	17: 26,416,634 (GRCm39)	E215G	possibly damaging	Het
Pds5a	A	T	5: 65,823,570 (GRCm39)	S74T	possibly damaging	Het
Phlpp2	A	G	8: 110,666,785 (GRCm39)	S1105G	probably damaging	Het
Pi4kb	T	A	3: 94,891,888 (GRCm39)	D189E	probably benign	Het
Pigw	G	A	11: 84,768,585 (GRCm39)	T248M	probably damaging	Het
Pnlip	T	A	19: 58,670,134 (GRCm39)	V458D	probably damaging	Het
Ppm1l	G	A	3: 69,225,044 (GRCm39)	V49I	probably benign	Het
Prl3b1	T	A	13: 27,426,473 (GRCm39)	M1K	probably null	Het
Rad1	T	A	15: 10,493,367 (GRCm39)	C265S	probably benign	Het
Rnaset2b	C	T	17: 7,265,427 (GRCm39)	S237F	probably benign	Het
Rtl1	C	T	12: 109,561,672 (GRCm39)	A56T	unknown	Het
S1pr2	T	C	9: 20,879,238 (GRCm39)	I197V	probably benign	Het
Smyd4	A	G	11: 75,281,082 (GRCm39)	Q185R	probably benign	Het
Sox5	T	A	6: 144,100,759 (GRCm39)	T77S	probably benign	Het
Sox7	A	G	14: 64,185,291 (GRCm39)	Y109C	probably damaging	Het
Styxl2	C	T	1: 165,954,676 (GRCm39)	V25I	probably damaging	Het
Tln1	G	A	4: 43,545,922 (GRCm39)	R898C	probably damaging	Het
Tmprss11b	T	A	5: 86,812,173 (GRCm39)	E158V	probably damaging	Het
Tnpo3	C	A	6: 29,562,875 (GRCm39)	R614L	possibly damaging	Het
Vmn2r100	T	A	17: 19,742,296 (GRCm39)	D223E	probably benign	Het
Zc3h12d	A	T	10: 7,743,345 (GRCm39)	M372L	probably benign	Het
Zfp28	G	T	7: 6,386,593 (GRCm39)		probably benign	Het
Zfp963	A	T	8: 70,195,759 (GRCm39)	H231Q	probably damaging	Het
Zscan4b	A	G	7: 10,634,867 (GRCm39)	S459P	probably benign	Het

Other mutations in Dennd2d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00513:Dennd2d	APN	3	106,407,861 (GRCm39)	missense	possibly damaging	0.45
IGL01397:Dennd2d	APN	3	106,394,365 (GRCm39)	critical splice donor site	probably null	0.00
IGL01410:Dennd2d	APN	3	106,398,542 (GRCm39)	missense	probably damaging	1.00
IGL02022:Dennd2d	APN	3	106,407,220 (GRCm39)	missense	probably benign	0.00
IGL02032:Dennd2d	APN	3	106,398,543 (GRCm39)	missense	probably damaging	1.00
IGL02309:Dennd2d	APN	3	106,402,284 (GRCm39)	missense	probably benign
R0140:Dennd2d	UTSW	3	106,399,799 (GRCm39)	missense	probably benign	0.08
R0648:Dennd2d	UTSW	3	106,407,871 (GRCm39)	missense	probably damaging	0.97
R1519:Dennd2d	UTSW	3	106,399,875 (GRCm39)	missense	probably damaging	1.00
R1539:Dennd2d	UTSW	3	106,394,236 (GRCm39)	missense	probably benign	0.00
R1652:Dennd2d	UTSW	3	106,394,317 (GRCm39)	missense	probably benign	0.00
R1674:Dennd2d	UTSW	3	106,399,833 (GRCm39)	missense	probably benign	0.17
R2179:Dennd2d	UTSW	3	106,399,776 (GRCm39)	missense	probably benign	0.00
R3731:Dennd2d	UTSW	3	106,407,271 (GRCm39)	missense	probably damaging	1.00
R4077:Dennd2d	UTSW	3	106,389,939 (GRCm39)	unclassified	probably benign
R4134:Dennd2d	UTSW	3	106,389,977 (GRCm39)	missense	probably benign	0.34
R4135:Dennd2d	UTSW	3	106,389,977 (GRCm39)	missense	probably benign	0.34
R5214:Dennd2d	UTSW	3	106,393,637 (GRCm39)	critical splice donor site	probably null
R5767:Dennd2d	UTSW	3	106,395,131 (GRCm39)	intron	probably benign
R6001:Dennd2d	UTSW	3	106,399,776 (GRCm39)	missense	probably benign	0.00
R6239:Dennd2d	UTSW	3	106,402,193 (GRCm39)	missense	probably damaging	1.00
R7593:Dennd2d	UTSW	3	106,407,244 (GRCm39)	missense	probably damaging	1.00
R8841:Dennd2d	UTSW	3	106,393,580 (GRCm39)	missense	probably benign
R9103:Dennd2d	UTSW	3	106,397,684 (GRCm39)	missense
R9341:Dennd2d	UTSW	3	106,397,730 (GRCm39)	critical splice donor site	probably null
R9343:Dennd2d	UTSW	3	106,397,730 (GRCm39)	critical splice donor site	probably null
R9388:Dennd2d	UTSW	3	106,395,915 (GRCm39)	missense	possibly damaging	0.93
Z1088:Dennd2d	UTSW	3	106,407,190 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- TTGTCCAGGAGATGAAAGCC -3'
(R):5'- GTGGGCATCAGGTACAGTAC -3'

Sequencing Primer
(F):5'- GCCAGTTATAGAGGGGCCTAG -3'
(R):5'- GCCAATAATTCTAATGCCTGGCTCAG -3'

Posted On

2019-06-26