Incidental Mutation 'R7320:Rtn4rl1'
ID 568158
Institutional Source Beutler Lab
Gene Symbol Rtn4rl1
Ensembl Gene ENSMUSG00000045287
Gene Name reticulon 4 receptor-like 1
Synonyms Ngr3, Ngrl2, Ngrh2
MMRRC Submission 045370-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.145) question?
Stock # R7320 (G1)
Quality Score 225.009
Status Not validated
Chromosome 11
Chromosomal Location 75084819-75158595 bp(+) (GRCm39)
Type of Mutation critical splice donor site (2 bp from exon)
DNA Base Change (assembly) T to C at 75085122 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000099572 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000044949] [ENSMUST00000102514] [ENSMUST00000139958]
AlphaFold Q8K0S5
Predicted Effect probably benign
Transcript: ENSMUST00000044949
SMART Domains Protein: ENSMUSP00000042162
Gene: ENSMUSG00000078789

DomainStartEndE-ValueType
Pfam:Diphthamide_syn 76 377 5.3e-123 PFAM
Predicted Effect probably null
Transcript: ENSMUST00000102514
SMART Domains Protein: ENSMUSP00000099572
Gene: ENSMUSG00000045287

DomainStartEndE-ValueType
LRRNT 24 58 2.74e-2 SMART
LRR 76 98 5.57e1 SMART
LRR 99 123 1.73e0 SMART
LRR 124 147 2.14e0 SMART
LRR_TYP 148 171 1.1e-2 SMART
LRR_TYP 172 195 6.88e-4 SMART
LRR 196 219 2.49e-1 SMART
LRR 220 243 5.72e0 SMART
LRRCT 255 305 8.21e-2 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000139958
SMART Domains Protein: ENSMUSP00000116537
Gene: ENSMUSG00000078789

DomainStartEndE-ValueType
Pfam:Diphthamide_syn 62 276 1.1e-79 PFAM
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency
MGI Phenotype PHENOTYPE: Mice homozygous for disruptions in this gene display fatty change in the liver, bile duct lesions in females and hepatocytes with enlarged vacuoles and nuclei in the male. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 84 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcc3 A G 11: 94,258,471 (GRCm39) I458T probably benign Het
Adam29 A G 8: 56,325,749 (GRCm39) I235T possibly damaging Het
Afap1 G A 5: 36,105,567 (GRCm39) V174I probably damaging Het
Ak8 A T 2: 28,703,004 (GRCm39) D456V probably damaging Het
Alb T C 5: 90,612,846 (GRCm39) probably null Het
Alox12 C T 11: 70,145,298 (GRCm39) A92T probably benign Het
Arhgap23 T C 11: 97,342,371 (GRCm39) S218P probably benign Het
Blm G A 7: 80,105,102 (GRCm39) Q1389* probably null Het
C1ql4 A T 15: 98,985,605 (GRCm39) V2E unknown Het
Casp12 A G 9: 5,348,897 (GRCm39) probably null Het
Ccdc73 A T 2: 104,829,521 (GRCm39) I1065F possibly damaging Het
Ccdc83 C T 7: 89,873,242 (GRCm39) G371D probably damaging Het
Cfap65 A G 1: 74,965,763 (GRCm39) S416P probably damaging Het
Cftr T A 6: 18,319,012 (GRCm39) C1351S probably damaging Het
Clcn4 A T 7: 7,294,827 (GRCm39) H311Q probably benign Het
Cldn13 T G 5: 134,943,874 (GRCm39) I104L probably benign Het
Cul9 A G 17: 46,821,835 (GRCm39) V1880A possibly damaging Het
Ddx17 A T 15: 79,416,105 (GRCm39) D407E probably damaging Het
Ddx28 G A 8: 106,737,957 (GRCm39) P34S probably damaging Het
Dnah5 A T 15: 28,270,616 (GRCm39) N973Y probably null Het
Dnai4 A T 4: 102,907,384 (GRCm39) I634N possibly damaging Het
Dock10 A G 1: 80,527,421 (GRCm39) probably null Het
Dock3 T C 9: 106,772,723 (GRCm39) D510G probably benign Het
Dst T A 1: 34,230,175 (GRCm39) D2589E probably benign Het
E2f7 T C 10: 110,599,991 (GRCm39) Y249H not run Het
Eef2kmt T C 16: 5,068,373 (GRCm39) Y69C possibly damaging Het
Elapor1 T A 3: 108,371,619 (GRCm39) K650* probably null Het
Erlin1 T C 19: 44,047,504 (GRCm39) Y139C probably damaging Het
Exog G T 9: 119,291,544 (GRCm39) V274L possibly damaging Het
Fam83e G A 7: 45,371,896 (GRCm39) V98M probably benign Het
Fras1 C T 5: 96,857,745 (GRCm39) T2013I probably benign Het
Gart G T 16: 91,418,569 (GRCm39) A970E probably benign Het
Gga2 T A 7: 121,601,326 (GRCm39) H259L probably benign Het
Glis3 C A 19: 28,508,998 (GRCm39) V329F probably damaging Het
Gm6356 T A 14: 6,972,923 (GRCm38) N53I probably damaging Het
Golgb1 C A 16: 36,736,313 (GRCm39) C1894* probably null Het
Ifi203 T C 1: 173,756,733 (GRCm39) N350S unknown Het
Isy1 T A 6: 87,810,688 (GRCm39) R55S unknown Het
Itsn1 A T 16: 91,636,587 (GRCm39) D678V unknown Het
Lhcgr T A 17: 89,049,506 (GRCm39) R673S probably benign Het
Lnx2 C A 5: 146,956,943 (GRCm39) R601L possibly damaging Het
Map4 A G 9: 109,910,585 (GRCm39) T1093A probably benign Het
Minar1 A G 9: 89,483,679 (GRCm39) S573P probably benign Het
Mink1 A G 11: 70,489,899 (GRCm39) K92E probably benign Het
Moxd1 A G 10: 24,177,363 (GRCm39) I560V probably benign Het
Mrc2 C A 11: 105,220,061 (GRCm39) D327E possibly damaging Het
Notch2 A G 3: 98,038,643 (GRCm39) E1262G possibly damaging Het
Or2g1 T A 17: 38,107,248 (GRCm39) N304K probably benign Het
Or4k48 A G 2: 111,476,297 (GRCm39) L15S probably benign Het
Or52d3 C A 7: 104,229,645 (GRCm39) S264* probably null Het
Or5an1 G A 19: 12,261,180 (GRCm39) G256D possibly damaging Het
Or5b120 T A 19: 13,480,544 (GRCm39) M279K possibly damaging Het
Or5j3 GTACTTTTT GT 2: 86,128,338 (GRCm39) probably null Het
Or5m13 A T 2: 85,748,718 (GRCm39) I150F probably benign Het
Or6c5b A T 10: 129,245,654 (GRCm39) T140S possibly damaging Het
Pcbp2 T A 15: 102,381,782 (GRCm39) V5E probably damaging Het
Pcp4l1 G A 1: 171,002,034 (GRCm39) A42V possibly damaging Het
Pgghg A T 7: 140,522,953 (GRCm39) Y104F probably benign Het
Plscr2 T C 9: 92,173,193 (GRCm39) probably null Het
Ppfibp1 C T 6: 146,879,551 (GRCm39) A25V probably damaging Het
Ptgfr C T 3: 151,541,034 (GRCm39) G158D probably benign Het
Ptgs2 T C 1: 149,978,446 (GRCm39) F186S probably damaging Het
Ptpn14 A G 1: 189,564,956 (GRCm39) E181G probably benign Het
Rpgrip1 A G 14: 52,368,673 (GRCm39) K291E possibly damaging Het
Sema3b T A 9: 107,478,141 (GRCm39) M415L probably benign Het
Sh3bp4 A G 1: 89,073,216 (GRCm39) E688G probably damaging Het
Slco6c1 G A 1: 97,055,887 (GRCm39) R5C possibly damaging Het
Slmap A G 14: 26,181,227 (GRCm39) F369L possibly damaging Het
Sphk2 T C 7: 45,361,894 (GRCm39) N181S possibly damaging Het
Sqor A G 2: 122,641,730 (GRCm39) T235A probably benign Het
St13 A G 15: 81,273,854 (GRCm39) L80P probably damaging Het
St3gal6 A G 16: 58,314,074 (GRCm39) Y20H probably benign Het
Sun1 T G 5: 139,234,239 (GRCm39) Y899D probably damaging Het
Synm C T 7: 67,385,128 (GRCm39) E845K possibly damaging Het
Tg A T 15: 66,566,633 (GRCm39) D1227V possibly damaging Het
Thbs1 A G 2: 117,945,438 (GRCm39) N306D possibly damaging Het
Tmcc3 A T 10: 94,414,357 (GRCm39) N51Y possibly damaging Het
Usp4 A G 9: 108,265,505 (GRCm39) D856G probably benign Het
Vil1 G A 1: 74,457,603 (GRCm39) A79T probably damaging Het
Vmn1r119 T A 7: 20,746,271 (GRCm39) H37L probably damaging Het
Vmn2r110 A T 17: 20,816,316 (GRCm39) M69K probably benign Het
Ywhaq A G 12: 21,444,982 (GRCm39) L221P probably damaging Het
Zfp142 G A 1: 74,609,167 (GRCm39) Q1543* probably null Het
Zfp384 T A 6: 125,001,793 (GRCm39) M146K possibly damaging Het
Other mutations in Rtn4rl1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01479:Rtn4rl1 APN 11 75,156,168 (GRCm39) missense probably damaging 1.00
IGL02161:Rtn4rl1 APN 11 75,156,666 (GRCm39) missense probably damaging 0.98
IGL02420:Rtn4rl1 APN 11 75,156,645 (GRCm39) missense probably damaging 0.98
IGL02641:Rtn4rl1 APN 11 75,156,650 (GRCm39) missense probably damaging 1.00
IGL02984:Rtn4rl1 UTSW 11 75,156,087 (GRCm39) missense probably benign 0.10
R0699:Rtn4rl1 UTSW 11 75,156,050 (GRCm39) missense probably benign 0.15
R0699:Rtn4rl1 UTSW 11 75,156,048 (GRCm39) missense possibly damaging 0.56
R1669:Rtn4rl1 UTSW 11 75,156,753 (GRCm39) missense probably benign
R1925:Rtn4rl1 UTSW 11 75,156,864 (GRCm39) missense probably benign 0.17
R2679:Rtn4rl1 UTSW 11 75,156,552 (GRCm39) missense probably benign 0.21
R4205:Rtn4rl1 UTSW 11 75,156,818 (GRCm39) missense probably damaging 1.00
R4205:Rtn4rl1 UTSW 11 75,156,809 (GRCm39) missense probably damaging 0.97
R6326:Rtn4rl1 UTSW 11 75,156,828 (GRCm39) missense possibly damaging 0.83
R6703:Rtn4rl1 UTSW 11 75,156,354 (GRCm39) missense probably benign 0.02
R7085:Rtn4rl1 UTSW 11 75,156,050 (GRCm39) missense probably benign 0.03
R7203:Rtn4rl1 UTSW 11 75,156,576 (GRCm39) missense possibly damaging 0.47
R7754:Rtn4rl1 UTSW 11 75,155,871 (GRCm39) missense probably benign
R8038:Rtn4rl1 UTSW 11 75,156,707 (GRCm39) missense possibly damaging 0.81
R8244:Rtn4rl1 UTSW 11 75,156,276 (GRCm39) missense probably damaging 1.00
R8306:Rtn4rl1 UTSW 11 75,156,147 (GRCm39) missense probably damaging 1.00
R8679:Rtn4rl1 UTSW 11 75,156,099 (GRCm39) missense probably damaging 0.99
R9240:Rtn4rl1 UTSW 11 75,156,082 (GRCm39) missense probably damaging 0.97
Z1186:Rtn4rl1 UTSW 11 75,156,863 (GRCm39) missense probably benign
Z1187:Rtn4rl1 UTSW 11 75,156,863 (GRCm39) missense probably benign
Z1188:Rtn4rl1 UTSW 11 75,156,863 (GRCm39) missense probably benign
Z1189:Rtn4rl1 UTSW 11 75,156,863 (GRCm39) missense probably benign
Z1190:Rtn4rl1 UTSW 11 75,156,863 (GRCm39) missense probably benign
Z1191:Rtn4rl1 UTSW 11 75,156,863 (GRCm39) missense probably benign
Z1192:Rtn4rl1 UTSW 11 75,156,863 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- ACCGCCTGCAAAGTGTTTG -3'
(R):5'- CATGTCTCTCAACAGGCCAC -3'

Sequencing Primer
(F):5'- TTTGGGGCGGCAGAATCAG -3'
(R):5'- ACCAACGGGAGCTCAGC -3'
Posted On 2019-06-26