Mutagenetix > Incidental Mutation

Incidental Mutation 'R7136:Capn12'

568599

Institutional Source

Beutler Lab

Gene Symbol

Capn12

Ensembl Gene

ENSMUSG00000054083

Gene Name

calpain 12

Synonyms

MMRRC Submission

045220-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7136 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

28580890-28593010 bp(+) (GRCm39)

Type of Mutation

splice site

DNA Base Change (assembly)

T to A at 28582532 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000069055 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000066880]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000066880

SMART Domains

Protein: ENSMUSP00000069055
Gene: ENSMUSG00000054083

Domain	Start	End	E-Value	Type
CysPc	27	349	7.8e-139	SMART
calpain_III	353	529	7.47e-72	SMART
SCOP:d1alva_	552	720	3e-14	SMART

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.1%

Validation Efficiency

100% (68/68)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The calpains, calcium-activated neutral proteases, are nonlysosomal, intracellular cysteine proteases. The mammalian calpains include ubiquitous, stomach-specific, and muscle-specific proteins. The ubiquitous enzymes consist of heterodimers with distinct large, catalytic subunits associated with a common small, regulatory subunit. This gene encodes a member of the calpain large subunit family. [provided by RefSeq, Jun 2012]

Allele List at MGI

All alleles(1) : Targeted(1)

Other mutations in this stock

Total: 68 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700123K08Rik	A	G	5: 138,560,610 (GRCm39)	S262P	probably damaging	Het
Abcc2	A	G	19: 43,825,899 (GRCm39)	E1512G	probably damaging	Het
Abcg2	T	G	6: 58,661,325 (GRCm39)	Y459D	possibly damaging	Het
Amy1	T	C	3: 113,357,248 (GRCm39)	Y197C	probably damaging	Het
Bptf	A	G	11: 106,990,541 (GRCm39)	I516T	probably damaging	Het
Cbln2	T	A	18: 86,734,797 (GRCm39)	L190Q	probably damaging	Het
Ccdc157	C	T	11: 4,098,592 (GRCm39)	E305K	possibly damaging	Het
Ccdc47	A	G	11: 106,095,830 (GRCm39)	S289P	probably benign	Het
Chd3	C	T	11: 69,239,264 (GRCm39)	E1756K	probably null	Het
Chrd	G	T	16: 20,553,272 (GRCm39)	A183S	possibly damaging	Het
Cp	C	T	3: 20,039,822 (GRCm39)	R880*	probably null	Het
Cyp24a1	A	T	2: 170,336,063 (GRCm39)	D191E	probably benign	Het
Dnah1	T	C	14: 31,020,613 (GRCm39)	Y1252C	probably damaging	Het
Eps8l1	A	G	7: 4,480,403 (GRCm39)	D487G	probably damaging	Het
Fam227b	T	G	2: 125,965,948 (GRCm39)	Q159P	probably damaging	Het
Fat3	A	G	9: 16,289,481 (GRCm39)	I14T	probably benign	Het
Fbxl19	C	A	7: 127,349,217 (GRCm39)	T129N	possibly damaging	Het
Fuca2	T	C	10: 13,381,665 (GRCm39)	F193L	probably benign	Het
H2-Q1	T	C	17: 35,539,603 (GRCm39)		probably null	Het
Hgh1	A	G	15: 76,254,631 (GRCm39)	M336V	probably benign	Het
Il12b	T	C	11: 44,298,857 (GRCm39)	L104P	probably benign	Het
Kcnh2	A	T	5: 24,537,989 (GRCm39)	F125I	probably benign	Het
Kcnk7	A	G	19: 5,756,104 (GRCm39)	H110R	probably benign	Het
Kdm3a	G	A	6: 71,588,764 (GRCm39)	P415L	probably benign	Het
Kifc3	T	C	8: 95,830,077 (GRCm39)	T610A	probably benign	Het
Krbox5	A	G	13: 67,991,111 (GRCm39)		probably null	Het
Lmbr1l	C	A	15: 98,809,372 (GRCm39)		probably null	Het
Lmo7	T	A	14: 102,157,975 (GRCm39)	M1436K	unknown	Het
Lrp1	C	T	10: 127,394,491 (GRCm39)	C2574Y	probably damaging	Het
Med13l	A	G	5: 118,859,587 (GRCm39)	E258G	possibly damaging	Het
Mesp1	T	C	7: 79,442,906 (GRCm39)	I124V	probably damaging	Het
Mrgpra2a	A	T	7: 47,076,934 (GRCm39)	I108N	probably benign	Het
Nos1	G	T	5: 118,033,925 (GRCm39)	R349L	possibly damaging	Het
Or5k3	C	T	16: 58,969,327 (GRCm39)	T38I	probably damaging	Het
Or7c70	T	C	10: 78,683,615 (GRCm39)	I45V	probably benign	Het
Osgin1	T	A	8: 120,168,176 (GRCm39)	M1K	probably null	Het
Pde4dip	C	T	3: 97,601,379 (GRCm39)	S2346N	probably benign	Het
Pde7a	T	C	3: 19,285,258 (GRCm39)	M310V	probably benign	Het
Pigw	G	A	11: 84,768,585 (GRCm39)	T248M	probably damaging	Het
Pink1	T	C	4: 138,044,769 (GRCm39)	T323A	probably damaging	Het
Polr3a	C	T	14: 24,511,883 (GRCm39)	R891Q	probably damaging	Het
Prkar1b	C	A	5: 139,094,363 (GRCm39)	C75F	probably benign	Het
Prss58	C	T	6: 40,876,987 (GRCm39)		probably null	Het
Ptk2	G	A	15: 73,093,658 (GRCm39)	P854S	possibly damaging	Het
Pttg1ip2	A	T	5: 5,516,631 (GRCm39)	D63E	possibly damaging	Het
Qars1	T	C	9: 108,389,971 (GRCm39)	I350T	probably damaging	Het
Qprt	T	C	7: 126,707,984 (GRCm39)	K149R	probably damaging	Het
Rasgrf1	T	A	9: 89,873,651 (GRCm39)	D653E	probably damaging	Het
Rbm26	T	C	14: 105,381,703 (GRCm39)	M481V	possibly damaging	Het
Rdx	C	T	9: 51,997,745 (GRCm39)	T573M	probably damaging	Het
Rgs14	A	G	13: 55,527,508 (GRCm39)		probably null	Het
Robo2	T	C	16: 73,753,438 (GRCm39)	E813G	probably damaging	Het
Rrbp1	A	T	2: 143,791,600 (GRCm39)	F1369I	probably benign	Het
Sh2d4b	T	A	14: 40,562,209 (GRCm39)	T319S	probably benign	Het
Slc7a15	G	T	12: 8,588,895 (GRCm39)	N217K	probably damaging	Het
Stmn1	A	G	4: 134,198,088 (GRCm39)	K42E	probably damaging	Het
Tbl2	T	G	5: 135,178,682 (GRCm39)	W31G	probably benign	Het
Tmem8b	T	C	4: 43,669,845 (GRCm39)	C114R	possibly damaging	Het
Tsc2	T	C	17: 24,832,254 (GRCm39)	S711G	probably benign	Het
Ttn	T	C	2: 76,666,904 (GRCm39)	R11531G	unknown	Het
Ube2e3	T	C	2: 78,744,085 (GRCm39)	Y105H	probably benign	Het
Usp16	G	T	16: 87,280,059 (GRCm39)	C753F	probably benign	Het
Vmn1r13	T	C	6: 57,187,239 (GRCm39)	S133P	possibly damaging	Het
Vmn2r76	T	A	7: 85,877,975 (GRCm39)	Q474L	probably benign	Het
Vps52	T	C	17: 34,184,262 (GRCm39)	I601T	probably benign	Het
Wasf1	A	T	10: 40,802,587 (GRCm39)	T81S	possibly damaging	Het
Wdr82	A	G	9: 106,048,532 (GRCm39)	S39G	probably benign	Het
Zdhhc13	A	G	7: 48,451,080 (GRCm39)	I108V	probably benign	Het

Other mutations in Capn12

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01717:Capn12	APN	7	28,588,530 (GRCm39)	missense	probably benign
IGL01758:Capn12	APN	7	28,586,048 (GRCm39)	splice site	probably null
IGL02381:Capn12	APN	7	28,585,880 (GRCm39)	splice site	probably benign
IGL02863:Capn12	APN	7	28,582,581 (GRCm39)	missense	probably damaging	1.00
IGL03237:Capn12	APN	7	28,590,366 (GRCm39)	missense	probably damaging	1.00
PIT4418001:Capn12	UTSW	7	28,585,961 (GRCm39)	missense	probably benign	0.06
R0027:Capn12	UTSW	7	28,581,385 (GRCm39)	missense	probably benign	0.01
R0047:Capn12	UTSW	7	28,589,812 (GRCm39)	critical splice donor site	probably null
R0047:Capn12	UTSW	7	28,589,812 (GRCm39)	critical splice donor site	probably null
R0070:Capn12	UTSW	7	28,588,551 (GRCm39)	unclassified	probably benign
R0070:Capn12	UTSW	7	28,588,551 (GRCm39)	unclassified	probably benign
R0533:Capn12	UTSW	7	28,587,108 (GRCm39)	missense	possibly damaging	0.48
R0932:Capn12	UTSW	7	28,587,123 (GRCm39)	missense	possibly damaging	0.91
R1524:Capn12	UTSW	7	28,582,189 (GRCm39)	splice site	probably benign
R4758:Capn12	UTSW	7	28,592,148 (GRCm39)	missense	possibly damaging	0.66
R4793:Capn12	UTSW	7	28,592,094 (GRCm39)	missense	probably benign	0.23
R4983:Capn12	UTSW	7	28,589,795 (GRCm39)	missense	probably benign	0.00
R5560:Capn12	UTSW	7	28,582,285 (GRCm39)	missense	probably benign	0.01
R5835:Capn12	UTSW	7	28,581,383 (GRCm39)	missense	probably benign	0.05
R5886:Capn12	UTSW	7	28,587,030 (GRCm39)	missense	probably benign	0.01
R6247:Capn12	UTSW	7	28,588,077 (GRCm39)	missense	probably benign	0.05
R6441:Capn12	UTSW	7	28,587,427 (GRCm39)	missense	probably benign	0.00
R7757:Capn12	UTSW	7	28,582,246 (GRCm39)	missense	probably damaging	1.00
R8329:Capn12	UTSW	7	28,582,626 (GRCm39)	missense	probably damaging	1.00
R8888:Capn12	UTSW	7	28,585,949 (GRCm39)	splice site	probably benign
R8924:Capn12	UTSW	7	28,582,628 (GRCm39)	missense	probably damaging	1.00
R9150:Capn12	UTSW	7	28,590,378 (GRCm39)	missense	probably benign	0.11
R9209:Capn12	UTSW	7	28,581,243 (GRCm39)	missense	probably damaging	1.00
Z1177:Capn12	UTSW	7	28,587,253 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GCATGATGACATAGGCTTCAC -3'
(R):5'- TCAGTACTCCACGTGGCTTG -3'

Sequencing Primer
(F):5'- GATGACATAGGCTTCACAGTTACC -3'
(R):5'- CATGTTCTTGGGGCTGCAGC -3'

Posted On

2019-08-29