Incidental Mutation 'R7329:Clstn2'
ID 569128
Institutional Source Beutler Lab
Gene Symbol Clstn2
Ensembl Gene ENSMUSG00000032452
Gene Name calsyntenin 2
Synonyms 2900042C18Rik, Cst-2, CS2, CSTN2
MMRRC Submission 045422-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R7329 (G1)
Quality Score 225.009
Status Validated
Chromosome 9
Chromosomal Location 97326448-97915234 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) G to T at 97343422 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Aspartic acid at position 675 (A675D)
Ref Sequence ENSEMBL: ENSMUSP00000035027 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000035027] [ENSMUST00000162295]
AlphaFold Q9ER65
Predicted Effect probably benign
Transcript: ENSMUST00000035027
AA Change: A675D

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000035027
Gene: ENSMUSG00000032452
AA Change: A675D

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
CA 67 160 2e-10 SMART
CA 183 261 1.18e-3 SMART
SCOP:d1a8d_1 358 538 5e-21 SMART
Blast:LamG 380 529 3e-41 BLAST
transmembrane domain 835 857 N/A INTRINSIC
low complexity region 901 935 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000162295
AA Change: A675D

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)
SMART Domains Protein: ENSMUSP00000124081
Gene: ENSMUSG00000032452
AA Change: A675D

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
CA 67 160 2e-10 SMART
CA 183 261 1.18e-3 SMART
Pfam:Laminin_G_3 356 533 1.4e-9 PFAM
transmembrane domain 835 857 N/A INTRINSIC
low complexity region 901 935 N/A INTRINSIC
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 100.0%
  • 10x: 99.8%
  • 20x: 99.4%
Validation Efficiency 100% (78/78)
MGI Phenotype PHENOTYPE: Homozygous KO mice display deficiency in spatial learning and memory in Morris water and Barnes maze tasks and increased locomotor activity in open field test. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 79 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Actb T C 5: 142,890,146 (GRCm39) N252S probably benign Het
Adgrb1 C A 15: 74,411,094 (GRCm39) T330K probably damaging Het
Ahnak A G 19: 8,979,156 (GRCm39) T147A probably damaging Het
Ankfy1 T C 11: 72,603,034 (GRCm39) V21A probably damaging Het
Arrdc4 T A 7: 68,390,775 (GRCm39) N322Y probably damaging Het
Bfsp2 C A 9: 103,327,121 (GRCm39) E205D probably benign Het
C2cd4b T A 9: 67,667,419 (GRCm39) S138R possibly damaging Het
Camkk1 C G 11: 72,917,873 (GRCm39) N147K probably damaging Het
Ckap2l T A 2: 129,127,284 (GRCm39) Q298L possibly damaging Het
Cntnap2 G A 6: 47,248,205 (GRCm39) V1204M possibly damaging Het
Col4a1 C T 8: 11,276,494 (GRCm39) probably null Het
Ctrc T C 4: 141,571,022 (GRCm39) T73A probably benign Het
Cubn A G 2: 13,473,582 (GRCm39) F454L probably damaging Het
Cuedc1 A T 11: 88,060,692 (GRCm39) S12C unknown Het
Cyb561a3 G T 19: 10,565,268 (GRCm39) G211C probably damaging Het
D5Ertd579e A T 5: 36,773,739 (GRCm39) S219T probably benign Het
Dennd4c T A 4: 86,759,318 (GRCm39) Y1783N probably damaging Het
Dennd4c C T 4: 86,698,111 (GRCm39) P200S possibly damaging Het
Dnah6 G A 6: 73,121,705 (GRCm39) Q1426* probably null Het
Dync2h1 T G 9: 7,011,247 (GRCm39) T3649P probably benign Het
E2f8 T C 7: 48,521,858 (GRCm39) S415G probably damaging Het
Fbxo22 A G 9: 55,122,261 (GRCm39) I147V probably benign Het
Gclc A G 9: 77,683,473 (GRCm39) Y110C probably damaging Het
Gstm5 A G 3: 107,803,647 (GRCm39) T27A possibly damaging Het
Heatr4 A G 12: 84,024,856 (GRCm39) S322P probably benign Het
Htt T A 5: 34,987,099 (GRCm39) I1106N probably benign Het
Hunk T C 16: 90,183,570 (GRCm39) V76A probably benign Het
Igkv12-98 C T 6: 68,548,087 (GRCm39) T72I possibly damaging Het
Igkv9-123 A T 6: 67,931,629 (GRCm39) W16R possibly damaging Het
Ipo7 T C 7: 109,648,224 (GRCm39) L674S possibly damaging Het
Kcnh6 T C 11: 105,908,203 (GRCm39) F273S probably benign Het
Lamb3 C A 1: 193,002,848 (GRCm39) Q98K possibly damaging Het
Lingo4 A T 3: 94,310,162 (GRCm39) T367S probably benign Het
Lypd6b A T 2: 49,832,512 (GRCm39) I26F probably benign Het
Maneal T C 4: 124,750,512 (GRCm39) T415A probably benign Het
Mapk1ip1l A G 14: 47,547,920 (GRCm39) T23A unknown Het
Mrps17 T A 5: 129,793,705 (GRCm39) probably benign Het
Mup13 T G 4: 61,183,688 (GRCm39) D45A probably damaging Het
Mycbpap T A 11: 94,400,073 (GRCm39) D408V probably damaging Het
Myh10 A G 11: 68,701,017 (GRCm39) H1742R probably benign Het
Mylk4 A G 13: 32,900,766 (GRCm39) Y255H probably damaging Het
Nbeal1 A G 1: 60,256,355 (GRCm39) Q200R probably benign Het
Nkain2 TTTACTCGTT TTT 10: 32,765,892 (GRCm39) probably null Het
Olfm4 T C 14: 80,249,369 (GRCm39) V162A possibly damaging Het
Or1j15 A G 2: 36,458,708 (GRCm39) T33A probably benign Het
Or51a8 T C 7: 102,550,039 (GRCm39) L155P probably damaging Het
Or5w8 T C 2: 87,687,585 (GRCm39) V22A probably benign Het
Or8c11 C A 9: 38,289,456 (GRCm39) T87K probably benign Het
Ovol3 T A 7: 29,934,677 (GRCm39) R43S probably benign Het
Pcbp1 A G 6: 86,502,098 (GRCm39) V267A probably benign Het
Phf20 T A 2: 156,146,552 (GRCm39) V903E probably damaging Het
Pi4k2b T G 5: 52,914,211 (GRCm39) S316A probably benign Het
Pira1 G A 7: 3,742,875 (GRCm39) probably benign Het
Pkhd1 A T 1: 20,617,743 (GRCm39) H947Q probably damaging Het
Ppip5k2 A C 1: 97,678,478 (GRCm39) probably null Het
Prkca T A 11: 107,905,103 (GRCm39) T212S possibly damaging Het
Psg16 A T 7: 16,824,611 (GRCm39) I41F possibly damaging Het
Rae1 T A 2: 172,851,238 (GRCm39) F204I probably benign Het
Rasef T A 4: 73,662,374 (GRCm39) N192I probably damaging Het
Rfc1 T A 5: 65,420,478 (GRCm39) R1122S unknown Het
Rfx2 A T 17: 57,110,681 (GRCm39) S102T probably benign Het
Sez6l A G 5: 112,588,773 (GRCm39) Y647H probably damaging Het
Siglecf A G 7: 43,001,395 (GRCm39) Y121C probably damaging Het
Slc27a5 T C 7: 12,725,089 (GRCm39) T453A possibly damaging Het
Slc44a2 G A 9: 21,254,048 (GRCm39) R171Q probably damaging Het
Slc4a9 A C 18: 36,673,874 (GRCm39) E889A possibly damaging Het
Snx31 C A 15: 36,555,621 (GRCm39) R13L probably benign Het
Spag6l A T 16: 16,584,883 (GRCm39) Y422N probably benign Het
Spmip5 T C 19: 58,777,654 (GRCm39) E52G probably damaging Het
Sulf2 T C 2: 165,959,008 (GRCm39) T67A probably damaging Het
Syne2 G A 12: 76,013,758 (GRCm39) R2983Q probably benign Het
Tmtc3 A G 10: 100,283,281 (GRCm39) I758T probably benign Het
Top2a T A 11: 98,895,072 (GRCm39) I843L possibly damaging Het
Tph1 T C 7: 46,306,285 (GRCm39) probably null Het
Trdmt1 A G 2: 13,520,933 (GRCm39) L323P probably damaging Het
Ush2a A T 1: 188,285,395 (GRCm39) E1977V probably damaging Het
Utp4 A G 8: 107,640,095 (GRCm39) E468G probably benign Het
Uts2r A G 11: 121,051,558 (GRCm39) T141A possibly damaging Het
Vmn1r230 A G 17: 21,066,952 (GRCm39) Y47C probably damaging Het
Other mutations in Clstn2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00562:Clstn2 APN 9 97,464,505 (GRCm39) splice site probably benign
IGL00563:Clstn2 APN 9 97,464,505 (GRCm39) splice site probably benign
IGL00733:Clstn2 APN 9 97,365,102 (GRCm39) missense probably damaging 1.00
IGL01303:Clstn2 APN 9 97,365,128 (GRCm39) nonsense probably null
IGL01935:Clstn2 APN 9 97,345,521 (GRCm39) missense probably damaging 1.00
IGL02157:Clstn2 APN 9 97,423,928 (GRCm39) missense probably benign
IGL02974:Clstn2 APN 9 97,414,760 (GRCm39) missense probably damaging 1.00
IGL03164:Clstn2 APN 9 97,681,462 (GRCm39) missense possibly damaging 0.50
IGL03298:Clstn2 APN 9 97,338,625 (GRCm39) missense probably damaging 1.00
R0653:Clstn2 UTSW 9 97,340,257 (GRCm39) missense probably damaging 1.00
R0845:Clstn2 UTSW 9 97,452,681 (GRCm39) missense probably benign 0.39
R0992:Clstn2 UTSW 9 97,327,765 (GRCm39) missense probably benign 0.00
R1105:Clstn2 UTSW 9 97,465,552 (GRCm39) splice site probably null
R1112:Clstn2 UTSW 9 97,340,281 (GRCm39) missense possibly damaging 0.92
R1264:Clstn2 UTSW 9 97,339,662 (GRCm39) missense probably benign 0.28
R1275:Clstn2 UTSW 9 97,339,483 (GRCm39) missense probably benign 0.00
R1329:Clstn2 UTSW 9 97,340,227 (GRCm39) missense probably damaging 1.00
R1396:Clstn2 UTSW 9 97,343,446 (GRCm39) missense probably benign 0.02
R1556:Clstn2 UTSW 9 97,338,558 (GRCm39) missense probably benign 0.41
R1703:Clstn2 UTSW 9 97,340,290 (GRCm39) missense possibly damaging 0.90
R1837:Clstn2 UTSW 9 97,465,593 (GRCm39) missense probably benign 0.00
R2911:Clstn2 UTSW 9 97,414,775 (GRCm39) missense probably damaging 1.00
R3434:Clstn2 UTSW 9 97,336,768 (GRCm39) missense probably benign 0.17
R3771:Clstn2 UTSW 9 97,464,615 (GRCm39) missense probably damaging 1.00
R3772:Clstn2 UTSW 9 97,464,615 (GRCm39) missense probably damaging 1.00
R3854:Clstn2 UTSW 9 97,345,648 (GRCm39) nonsense probably null
R4049:Clstn2 UTSW 9 97,339,613 (GRCm39) missense possibly damaging 0.59
R4334:Clstn2 UTSW 9 97,345,581 (GRCm39) missense probably damaging 1.00
R4705:Clstn2 UTSW 9 97,345,612 (GRCm39) missense possibly damaging 0.95
R4755:Clstn2 UTSW 9 97,327,726 (GRCm39) missense probably benign 0.01
R4884:Clstn2 UTSW 9 97,681,448 (GRCm39) missense probably damaging 1.00
R5017:Clstn2 UTSW 9 97,365,139 (GRCm39) missense probably damaging 1.00
R5076:Clstn2 UTSW 9 97,365,132 (GRCm39) missense probably damaging 1.00
R5122:Clstn2 UTSW 9 97,343,474 (GRCm39) missense probably damaging 1.00
R5155:Clstn2 UTSW 9 97,338,484 (GRCm39) missense probably benign 0.02
R5560:Clstn2 UTSW 9 97,351,872 (GRCm39) missense possibly damaging 0.95
R6009:Clstn2 UTSW 9 97,338,579 (GRCm39) missense probably benign 0.05
R6011:Clstn2 UTSW 9 97,338,579 (GRCm39) missense probably benign 0.05
R6029:Clstn2 UTSW 9 97,338,634 (GRCm39) missense probably benign 0.00
R6093:Clstn2 UTSW 9 97,340,263 (GRCm39) missense probably damaging 1.00
R6284:Clstn2 UTSW 9 97,336,727 (GRCm39) missense probably benign
R6676:Clstn2 UTSW 9 97,343,584 (GRCm39) missense probably damaging 1.00
R6902:Clstn2 UTSW 9 97,351,875 (GRCm39) missense probably damaging 1.00
R6946:Clstn2 UTSW 9 97,351,875 (GRCm39) missense probably damaging 1.00
R6966:Clstn2 UTSW 9 97,408,459 (GRCm39) nonsense probably null
R7330:Clstn2 UTSW 9 97,343,422 (GRCm39) missense probably benign 0.00
R7382:Clstn2 UTSW 9 97,681,451 (GRCm39) nonsense probably null
R7410:Clstn2 UTSW 9 97,423,920 (GRCm39) missense probably benign 0.06
R7549:Clstn2 UTSW 9 97,464,597 (GRCm39) missense probably benign 0.01
R7879:Clstn2 UTSW 9 97,351,817 (GRCm39) missense possibly damaging 0.90
R8070:Clstn2 UTSW 9 97,681,523 (GRCm39) missense possibly damaging 0.79
R8193:Clstn2 UTSW 9 97,465,683 (GRCm39) missense probably damaging 1.00
R8422:Clstn2 UTSW 9 97,340,239 (GRCm39) missense probably benign 0.39
R9190:Clstn2 UTSW 9 97,414,815 (GRCm39) missense probably damaging 1.00
R9221:Clstn2 UTSW 9 97,343,395 (GRCm39) missense probably benign 0.00
R9305:Clstn2 UTSW 9 97,343,537 (GRCm39) missense probably damaging 1.00
R9347:Clstn2 UTSW 9 97,464,654 (GRCm39) missense probably damaging 1.00
R9520:Clstn2 UTSW 9 97,414,763 (GRCm39) missense probably damaging 1.00
R9751:Clstn2 UTSW 9 97,339,703 (GRCm39) missense probably damaging 0.98
X0027:Clstn2 UTSW 9 97,408,452 (GRCm39) missense probably damaging 1.00
Z1177:Clstn2 UTSW 9 97,343,409 (GRCm39) missense probably benign
Predicted Primers PCR Primer
(F):5'- CCTGCTACTAACATGGGTGTC -3'
(R):5'- GCATCAGCATCCCAGATGTG -3'

Sequencing Primer
(F):5'- ACACTTGGTTAAGCTGTCTGC -3'
(R):5'- CTGCCCAGTTTGAAAGTG -3'
Posted On 2019-09-13