Mutagenetix > Incidental Mutation

Incidental Mutation 'R0644:Osbpl6'

56986

Institutional Source

Beutler Lab

Gene Symbol

Osbpl6

Ensembl Gene

ENSMUSG00000042359

Gene Name

oxysterol binding protein-like 6

Synonyms

1110062M20Rik, ORP-6

MMRRC Submission

038829-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.520) question?

Stock #

R0644 (G1)

Quality Score

223

Status

Not validated

Chromosome

Chromosomal Location

76236852-76430991 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to T at 76425184 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Cysteine at position 878 (R878C)

Ref Sequence

ENSEMBL: ENSMUSP00000107561 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000077972] [ENSMUST00000111929] [ENSMUST00000111930] [ENSMUST00000184442]

AlphaFold

Q8BXR9

Predicted Effect

probably damaging
Transcript: ENSMUST00000077972
AA Change: R917C

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000077123
Gene: ENSMUSG00000042359
AA Change: R917C

Domain	Start	End	E-Value	Type
low complexity region	14	35	N/A	INTRINSIC
PH	87	183	3.65e-7	SMART
low complexity region	200	211	N/A	INTRINSIC
coiled coil region	255	285	N/A	INTRINSIC
low complexity region	537	550	N/A	INTRINSIC
Pfam:Oxysterol_BP	603	951	1.4e-135	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000111929
AA Change: R909C

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000107560
Gene: ENSMUSG00000042359
AA Change: R909C

Domain	Start	End	E-Value	Type
low complexity region	14	35	N/A	INTRINSIC
PH	87	183	3.65e-7	SMART
low complexity region	200	211	N/A	INTRINSIC
coiled coil region	255	285	N/A	INTRINSIC
coiled coil region	441	472	N/A	INTRINSIC
low complexity region	529	542	N/A	INTRINSIC
Pfam:Oxysterol_BP	595	944	1.1e-139	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000111930
AA Change: R878C

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000107561
Gene: ENSMUSG00000042359
AA Change: R878C

Domain	Start	End	E-Value	Type
low complexity region	14	35	N/A	INTRINSIC
PH	87	183	3.65e-7	SMART
low complexity region	200	211	N/A	INTRINSIC
coiled coil region	255	285	N/A	INTRINSIC
coiled coil region	410	441	N/A	INTRINSIC
low complexity region	498	511	N/A	INTRINSIC
Pfam:Oxysterol_BP	564	913	1e-139	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000184442
AA Change: R771C

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000139363
Gene: ENSMUSG00000042359
AA Change: R771C

Domain	Start	End	E-Value	Type
Blast:PH	1	70	8e-41	BLAST
low complexity region	87	98	N/A	INTRINSIC
coiled coil region	142	172	N/A	INTRINSIC
coiled coil region	303	334	N/A	INTRINSIC
low complexity region	391	404	N/A	INTRINSIC
Pfam:Oxysterol_BP	457	794	2.6e-135	PFAM

Coding Region Coverage

1x: 99.2%
3x: 98.7%
10x: 97.4%
20x: 95.7%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the oxysterol-binding protein (OSBP) family, a group of intracellular lipid receptors. Most members contain an N-terminal pleckstrin homology domain and a highly conserved C-terminal OSBP-like sterol-binding domain. Transcript variants encoding different isoforms have been identified. [provided by RefSeq, Jul 2008]

Allele List at MGI

All alleles(2) : Gene trapped(2)

Other mutations in this stock

Total: 30 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abcg4	A	T	9: 44,185,996 (GRCm39)	I625N	possibly damaging	Het
Accs	A	G	2: 93,669,574 (GRCm39)	L282P	probably damaging	Het
Acsbg1	T	A	9: 54,517,110 (GRCm39)	I568F	probably damaging	Het
Ass1	A	T	2: 31,404,831 (GRCm39)	N371Y	probably damaging	Het
Atp5po	A	T	16: 91,723,372 (GRCm39)	V73E	probably damaging	Het
Bcl9	T	C	3: 97,117,813 (GRCm39)	S294G	probably benign	Het
C2cd5	A	T	6: 142,958,950 (GRCm39)	M1003K	probably damaging	Het
Col6a5	A	G	9: 105,825,523 (GRCm39)		probably null	Het
Dera	A	T	6: 137,760,046 (GRCm39)	T165S	probably benign	Het
Elf2	C	T	3: 51,215,552 (GRCm39)	V53M	probably damaging	Het
Entpd5	A	T	12: 84,432,915 (GRCm39)	F212L	probably benign	Het
Fndc3c1	T	A	X: 105,478,568 (GRCm39)	T761S	probably benign	Het
Fsip2	A	G	2: 82,807,241 (GRCm39)	T1187A	probably benign	Het
Golga2	T	C	2: 32,187,533 (GRCm39)	S95P	probably damaging	Het
Hfm1	A	T	5: 107,046,122 (GRCm39)		probably null	Het
Impdh2	G	T	9: 108,440,836 (GRCm39)	V112L	possibly damaging	Het
Kbtbd3	A	T	9: 4,329,868 (GRCm39)	M81L	probably damaging	Het
Lactb	T	C	9: 66,863,172 (GRCm39)	R481G	possibly damaging	Het
Nacad	C	T	11: 6,549,486 (GRCm39)	C1235Y	possibly damaging	Het
Or5d37	T	A	2: 87,923,633 (GRCm39)	M216L	probably benign	Het
Or5h26	G	A	16: 58,987,979 (GRCm39)	H176Y	probably damaging	Het
Polr3a	G	A	14: 24,534,232 (GRCm39)	P91L	probably damaging	Het
Rab27a	T	A	9: 73,002,705 (GRCm39)	S211R	probably benign	Het
Scn9a	C	T	2: 66,363,405 (GRCm39)		probably null	Het
Shank2	T	C	7: 143,965,586 (GRCm39)	S1065P	probably benign	Het
Tent5d	T	C	X: 106,914,251 (GRCm39)	F111S	probably damaging	Het
Tgm4	A	T	9: 122,880,523 (GRCm39)	D308V	probably damaging	Het
Vps26c	A	G	16: 94,303,054 (GRCm39)	L182P	probably damaging	Het
Ythdf3	T	C	3: 16,259,056 (GRCm39)	I412T	possibly damaging	Het
Zfp831	T	C	2: 174,487,656 (GRCm39)	V777A	probably benign	Het

Other mutations in Osbpl6

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00391:Osbpl6	APN	2	76,420,783 (GRCm39)	missense	probably damaging	1.00
IGL01109:Osbpl6	APN	2	76,379,871 (GRCm39)	missense	probably damaging	1.00
IGL01288:Osbpl6	APN	2	76,395,167 (GRCm39)	missense	probably damaging	0.98
IGL01717:Osbpl6	APN	2	76,418,938 (GRCm39)	missense	probably damaging	1.00
IGL02146:Osbpl6	APN	2	76,380,094 (GRCm39)	missense	possibly damaging	0.90
IGL02597:Osbpl6	APN	2	76,386,318 (GRCm39)	nonsense	probably null
IGL02652:Osbpl6	APN	2	76,423,798 (GRCm39)	missense	probably damaging	1.00
IGL02867:Osbpl6	APN	2	76,426,214 (GRCm39)	splice site	probably benign
IGL03143:Osbpl6	APN	2	76,378,716 (GRCm39)	missense	probably damaging	1.00
3-1:Osbpl6	UTSW	2	76,416,495 (GRCm39)	missense	probably damaging	1.00
R0085:Osbpl6	UTSW	2	76,423,758 (GRCm39)	missense	probably benign	0.30
R0201:Osbpl6	UTSW	2	76,376,386 (GRCm39)	missense	possibly damaging	0.92
R0573:Osbpl6	UTSW	2	76,420,735 (GRCm39)	missense	probably damaging	1.00
R0855:Osbpl6	UTSW	2	76,422,183 (GRCm39)	missense	probably damaging	1.00
R0855:Osbpl6	UTSW	2	76,415,477 (GRCm39)	missense	probably damaging	1.00
R1017:Osbpl6	UTSW	2	76,380,063 (GRCm39)	missense	probably damaging	1.00
R1459:Osbpl6	UTSW	2	76,385,409 (GRCm39)	missense	probably benign	0.01
R1505:Osbpl6	UTSW	2	76,409,586 (GRCm39)	missense	probably damaging	1.00
R1588:Osbpl6	UTSW	2	76,409,560 (GRCm39)	missense	probably benign
R1786:Osbpl6	UTSW	2	76,416,558 (GRCm39)	missense	probably damaging	1.00
R1863:Osbpl6	UTSW	2	76,415,402 (GRCm39)	missense	probably damaging	1.00
R2131:Osbpl6	UTSW	2	76,416,558 (GRCm39)	missense	probably damaging	1.00
R2132:Osbpl6	UTSW	2	76,416,558 (GRCm39)	missense	probably damaging	1.00
R2133:Osbpl6	UTSW	2	76,416,558 (GRCm39)	missense	probably damaging	1.00
R2233:Osbpl6	UTSW	2	76,417,113 (GRCm39)	missense	probably damaging	0.99
R2235:Osbpl6	UTSW	2	76,417,113 (GRCm39)	missense	probably damaging	0.99
R2256:Osbpl6	UTSW	2	76,414,818 (GRCm39)	missense	probably damaging	1.00
R2294:Osbpl6	UTSW	2	76,407,423 (GRCm39)	missense	possibly damaging	0.81
R3023:Osbpl6	UTSW	2	76,417,077 (GRCm39)	missense	probably damaging	1.00
R4192:Osbpl6	UTSW	2	76,415,573 (GRCm39)	missense	probably damaging	1.00
R4544:Osbpl6	UTSW	2	76,414,836 (GRCm39)	missense	possibly damaging	0.84
R4546:Osbpl6	UTSW	2	76,414,836 (GRCm39)	missense	possibly damaging	0.84
R4664:Osbpl6	UTSW	2	76,398,552 (GRCm39)	missense	probably benign	0.02
R4764:Osbpl6	UTSW	2	76,376,344 (GRCm39)	missense	probably damaging	1.00
R4884:Osbpl6	UTSW	2	76,379,883 (GRCm39)	missense	probably damaging	1.00
R5080:Osbpl6	UTSW	2	76,354,429 (GRCm39)	missense	probably benign	0.31
R5430:Osbpl6	UTSW	2	76,416,482 (GRCm39)	missense	probably damaging	1.00
R5614:Osbpl6	UTSW	2	76,398,453 (GRCm39)	missense	probably damaging	1.00
R5807:Osbpl6	UTSW	2	76,414,857 (GRCm39)	missense	probably damaging	0.98
R5956:Osbpl6	UTSW	2	76,379,856 (GRCm39)	missense	probably damaging	1.00
R6394:Osbpl6	UTSW	2	76,386,298 (GRCm39)	missense	probably benign	0.00
R6430:Osbpl6	UTSW	2	76,409,620 (GRCm39)	missense	probably damaging	1.00
R6450:Osbpl6	UTSW	2	76,395,174 (GRCm39)	missense	possibly damaging	0.90
R7116:Osbpl6	UTSW	2	76,426,225 (GRCm39)	missense	probably benign	0.06
R7385:Osbpl6	UTSW	2	76,379,794 (GRCm39)	missense	probably damaging	1.00
R7422:Osbpl6	UTSW	2	76,423,730 (GRCm39)	missense	probably damaging	1.00
R7561:Osbpl6	UTSW	2	76,416,498 (GRCm39)	missense	probably damaging	1.00
R7829:Osbpl6	UTSW	2	76,423,731 (GRCm39)	missense	probably damaging	1.00
R7921:Osbpl6	UTSW	2	76,415,441 (GRCm39)	missense	probably damaging	1.00
R8183:Osbpl6	UTSW	2	76,415,404 (GRCm39)	missense	probably damaging	1.00
R8219:Osbpl6	UTSW	2	76,386,247 (GRCm39)	missense	probably damaging	0.98
R8548:Osbpl6	UTSW	2	76,409,566 (GRCm39)	missense	possibly damaging	0.88
R8682:Osbpl6	UTSW	2	76,407,425 (GRCm39)	missense	probably benign	0.00
R8935:Osbpl6	UTSW	2	76,379,800 (GRCm39)	missense	possibly damaging	0.60
R9157:Osbpl6	UTSW	2	76,382,468 (GRCm39)	missense	probably benign	0.00
R9303:Osbpl6	UTSW	2	76,378,716 (GRCm39)	missense	probably damaging	1.00
R9305:Osbpl6	UTSW	2	76,378,716 (GRCm39)	missense	probably damaging	1.00
R9526:Osbpl6	UTSW	2	76,415,603 (GRCm39)	missense	probably damaging	0.98
R9536:Osbpl6	UTSW	2	76,416,554 (GRCm39)	missense	probably benign	0.00
R9564:Osbpl6	UTSW	2	76,426,321 (GRCm39)	missense	probably damaging	1.00
R9571:Osbpl6	UTSW	2	76,425,191 (GRCm39)	missense	probably benign	0.03
R9585:Osbpl6	UTSW	2	76,354,438 (GRCm39)	missense	probably benign
R9771:Osbpl6	UTSW	2	76,423,771 (GRCm39)	missense	possibly damaging	0.89
R9790:Osbpl6	UTSW	2	76,385,361 (GRCm39)	missense	probably damaging	1.00
R9791:Osbpl6	UTSW	2	76,385,361 (GRCm39)	missense	probably damaging	1.00
Z1177:Osbpl6	UTSW	2	76,370,523 (GRCm39)	missense	probably benign	0.01
Z31818:Osbpl6	UTSW	2	76,385,426 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- ACAGATTGAGAACACATGGCCTGG -3'
(R):5'- CTCACTGTCTGATGCAAAGCTACCC -3'

Sequencing Primer
(F):5'- CAGTAATGTAACCACAGTTCAGG -3'
(R):5'- CAAAGCTACCCACATTTGCTTATG -3'

Posted On

2013-07-11