Mutagenetix > Incidental Mutation

Incidental Mutation 'R7342:Ms4a6d'

569969

Institutional Source

Beutler Lab

Gene Symbol

Ms4a6d

Ensembl Gene

ENSMUSG00000024679

Gene Name

membrane-spanning 4-domains, subfamily A, member 6D

Synonyms

Ms4a11

MMRRC Submission

045432-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.066) question?

Stock #

R7342 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

11563970-11582150 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

G to A at 11567437 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamine to Stop codon at position 155 (Q155*)

Ref Sequence

ENSEMBL: ENSMUSP00000025582 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000025582] [ENSMUST00000125291]

AlphaFold

no structure available at present

Predicted Effect

probably null
Transcript: ENSMUST00000025582
AA Change: Q155*

SMART Domains

Protein: ENSMUSP00000025582
Gene: ENSMUSG00000024679
AA Change: Q155*

Domain	Start	End	E-Value	Type
Pfam:CD20	47	207	2.8e-42	PFAM
low complexity region	222	235	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000125291
AA Change: Q47*

SMART Domains

Protein: ENSMUSP00000115142
Gene: ENSMUSG00000024679
AA Change: Q47*

Domain	Start	End	E-Value	Type
Pfam:CD20	1	99	3.7e-15	PFAM
low complexity region	114	127	N/A	INTRINSIC

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the membrane-spanning 4A gene family. Members of this nascent protein family are characterized by common structural features and similar intron/exon splice boundaries and display unique expression patterns among hematopoietic cells and nonlymphoid tissues. The gene encoding this protein is localized to 11q12.1, among a cluster of family members. Alternative splicing of this gene results in several transcript variants that encode different protein isoforms. [provided by RefSeq, Oct 2011]

Allele List at MGI

Other mutations in this stock

Total: 65 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aarsd1	T	G	11: 101,308,018 (GRCm39)	T28P	probably benign	Het
Abcc1	C	A	16: 14,283,033 (GRCm39)	R1170S	probably damaging	Het
Adam8	T	C	7: 139,566,304 (GRCm39)	N568S	probably benign	Het
Arhgap17	T	C	7: 122,926,467 (GRCm39)	R65G	probably damaging	Het
Arid4b	A	C	13: 14,310,804 (GRCm39)	I136L	probably benign	Het
Ash1l	G	T	3: 88,873,304 (GRCm39)	G29V	possibly damaging	Het
Atp6v0a2	A	G	5: 124,784,676 (GRCm39)	T320A	probably damaging	Het
B4gat1	G	A	19: 5,089,686 (GRCm39)	V228M	probably benign	Het
Calcr	T	A	6: 3,691,536 (GRCm39)	H450L	probably benign	Het
Cand1	A	T	10: 119,047,692 (GRCm39)	N599K	possibly damaging	Het
Cblif	A	T	19: 11,740,587 (GRCm39)	H407L	probably benign	Het
Cel	A	T	2: 28,450,649 (GRCm39)	Y125*	probably null	Het
Cfi	T	A	3: 129,668,781 (GRCm39)	N602K	probably damaging	Het
Clstn1	G	A	4: 149,713,887 (GRCm39)	A190T	probably damaging	Het
Cmklr1	C	T	5: 113,752,354 (GRCm39)	V216M	probably benign	Het
Cntnap5a	A	G	1: 115,987,852 (GRCm39)	T128A	probably benign	Het
Creld2	A	G	15: 88,710,610 (GRCm39)	T342A	probably benign	Het
Ctbp2	T	C	7: 132,616,041 (GRCm39)	E298G	probably damaging	Het
Ctsh	A	T	9: 89,957,040 (GRCm39)	E307V	probably benign	Het
Cxcl10	T	A	5: 92,496,029 (GRCm39)	D36V	probably benign	Het
Dgkb	A	G	12: 38,150,432 (GRCm39)	T73A	probably benign	Het
Dnah3	T	G	7: 119,629,208 (GRCm39)	E1449A	probably damaging	Het
Dpp6	T	C	5: 27,919,552 (GRCm39)	M683T	probably benign	Het
Foxn4	C	A	5: 114,396,760 (GRCm39)	W241L	probably damaging	Het
Gosr1	T	C	11: 76,621,033 (GRCm39)	I219V	probably benign	Het
Gtf2f2	T	C	14: 76,144,317 (GRCm39)	D179G	probably damaging	Het
Ighg2b	A	G	12: 113,270,050 (GRCm39)	Y323H		Het
Itpr2	A	T	6: 146,228,685 (GRCm39)	H1303Q	probably damaging	Het
Kif1b	A	C	4: 149,298,547 (GRCm39)	Y1040D	possibly damaging	Het
Lbr	C	T	1: 181,653,186 (GRCm39)		probably null	Het
Lrp2	A	G	2: 69,309,634 (GRCm39)	V2755A	possibly damaging	Het
Lrp6	G	T	6: 134,427,781 (GRCm39)	P1604T	probably damaging	Het
Lrrcc1	T	A	3: 14,619,431 (GRCm39)	C606S	probably benign	Het
Macf1	T	C	4: 123,275,917 (GRCm39)	E6217G	probably damaging	Het
Myo9b	T	C	8: 71,808,418 (GRCm39)	V1687A	probably damaging	Het
Naip2	A	T	13: 100,325,864 (GRCm39)	F15I	probably benign	Het
Neb	A	T	2: 52,171,679 (GRCm39)	S1605T	probably damaging	Het
Nuak1	T	C	10: 84,210,831 (GRCm39)	E419G	probably damaging	Het
Or14a260	G	A	7: 85,985,295 (GRCm39)	T103I	probably benign	Het
Or8c18	A	G	9: 38,203,574 (GRCm39)	Y111C	probably damaging	Het
Paip2b	T	A	6: 83,791,808 (GRCm39)	S25C	probably damaging	Het
Pgbd5	G	A	8: 125,160,709 (GRCm39)	R53C	probably benign	Het
Plin4	T	C	17: 56,411,608 (GRCm39)	T808A	probably benign	Het
Pramel11	A	T	4: 143,623,520 (GRCm39)	I218K	probably benign	Het
Prex2	A	G	1: 11,232,549 (GRCm39)	D872G	probably benign	Het
Ptf1a	A	G	2: 19,451,977 (GRCm39)	*325W	probably null	Het
Ptprg	T	C	14: 12,237,151 (GRCm38)	V1390A	possibly damaging	Het
Rhpn2	A	G	7: 35,033,771 (GRCm39)	T2A	probably damaging	Het
Rpl18a	T	C	8: 71,348,042 (GRCm39)	N214D	unknown	Het
Scp2	T	A	4: 107,948,518 (GRCm39)	Y197F	probably benign	Het
Sftpb	G	A	6: 72,286,858 (GRCm39)	R254H	probably benign	Het
Slc17a9	T	C	2: 180,378,555 (GRCm39)	L246P	probably damaging	Het
Slc38a9	G	T	13: 112,806,125 (GRCm39)		probably benign	Het
Slc4a1ap	C	T	5: 31,693,634 (GRCm39)	L523F	possibly damaging	Het
Spats2l	C	A	1: 57,925,106 (GRCm39)	T168K	possibly damaging	Het
Sstr1	A	G	12: 58,260,456 (GRCm39)	S360G	possibly damaging	Het
Taf1b	A	T	12: 24,608,343 (GRCm39)	K581*	probably null	Het
Tfip11	T	A	5: 112,475,838 (GRCm39)	M1K	probably null	Het
Tgoln1	G	C	6: 72,593,261 (GRCm39)	T73R	probably benign	Het
Ttc23l	G	A	15: 10,551,583 (GRCm39)	H48Y	probably benign	Het
Uggt2	T	A	14: 119,232,384 (GRCm39)	H1489L	possibly damaging	Het
Unc13b	T	C	4: 43,258,703 (GRCm39)	L1346P	probably damaging	Het
Vmac	T	C	17: 57,022,644 (GRCm39)	E122G	probably benign	Het
Vmn2r125	T	C	4: 156,703,138 (GRCm39)	V172A	probably damaging	Het
Zfp54	A	G	17: 21,648,014 (GRCm39)		probably benign	Het

Other mutations in Ms4a6d

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00495:Ms4a6d	APN	19	11,579,249 (GRCm39)	missense	probably damaging	0.99
IGL01638:Ms4a6d	APN	19	11,564,532 (GRCm39)	missense	probably damaging	0.99
IGL01799:Ms4a6d	APN	19	11,567,499 (GRCm39)	missense	probably damaging	1.00
IGL02304:Ms4a6d	APN	19	11,580,505 (GRCm39)	splice site	probably benign
R1873:Ms4a6d	UTSW	19	11,579,223 (GRCm39)	missense	probably damaging	1.00
R1993:Ms4a6d	UTSW	19	11,567,523 (GRCm39)	missense	probably damaging	1.00
R2443:Ms4a6d	UTSW	19	11,567,557 (GRCm39)	missense	possibly damaging	0.93
R2900:Ms4a6d	UTSW	19	11,567,508 (GRCm39)	missense	probably damaging	1.00
R5288:Ms4a6d	UTSW	19	11,564,500 (GRCm39)	missense	possibly damaging	0.78
R6251:Ms4a6d	UTSW	19	11,564,504 (GRCm39)	missense	probably damaging	0.99
R7339:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R7340:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R7341:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R7347:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R7348:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R7350:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R7368:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R7393:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R7394:Ms4a6d	UTSW	19	11,567,437 (GRCm39)	nonsense	probably null
R8020:Ms4a6d	UTSW	19	11,567,472 (GRCm39)	missense	probably benign	0.00
R8181:Ms4a6d	UTSW	19	11,580,653 (GRCm39)	missense	probably damaging	0.99
R8785:Ms4a6d	UTSW	19	11,570,400 (GRCm39)	critical splice donor site	probably benign
R9262:Ms4a6d	UTSW	19	11,579,216 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- TGAACAGAGTTTTGAATCAGGGAAC -3'
(R):5'- GCAGACACTAGAGGGCATTG -3'

Sequencing Primer
(F):5'- TCAGGGAACAGAAGAAATATGCTGTC -3'
(R):5'- CAAGCAGCTGGGCCTATTATAGTG -3'

Posted On

2019-09-13