Incidental Mutation 'R7380:Focad'
ID 572617
Institutional Source Beutler Lab
Gene Symbol Focad
Ensembl Gene ENSMUSG00000038368
Gene Name focadhesin
Synonyms BC057079
MMRRC Submission 045462-MU
Accession Numbers
Essential gene? Possibly essential (E-score: 0.515) question?
Stock # R7380 (G1)
Quality Score 225.009
Status Validated
Chromosome 4
Chromosomal Location 88012866-88329248 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to A at 88192435 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Valine to Aspartic acid at position 588 (V588D)
Ref Sequence ENSEMBL: ENSMUSP00000124298 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000097992] [ENSMUST00000159342]
AlphaFold A2AKG8
Predicted Effect unknown
Transcript: ENSMUST00000097992
AA Change: V674D
SMART Domains Protein: ENSMUSP00000095602
Gene: ENSMUSG00000038368
AA Change: V674D

DomainStartEndE-ValueType
low complexity region 150 161 N/A INTRINSIC
low complexity region 194 203 N/A INTRINSIC
low complexity region 264 273 N/A INTRINSIC
low complexity region 328 338 N/A INTRINSIC
low complexity region 348 361 N/A INTRINSIC
Pfam:DUF3730 490 714 1.5e-71 PFAM
low complexity region 957 969 N/A INTRINSIC
low complexity region 1032 1047 N/A INTRINSIC
low complexity region 1200 1209 N/A INTRINSIC
Pfam:DUF3028 1210 1798 1.5e-291 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000159342
AA Change: V588D
SMART Domains Protein: ENSMUSP00000124298
Gene: ENSMUSG00000038368
AA Change: V588D

DomainStartEndE-ValueType
Pfam:DUF3730 20 250 5.8e-27 PFAM
low complexity region 264 273 N/A INTRINSIC
low complexity region 328 338 N/A INTRINSIC
low complexity region 348 361 N/A INTRINSIC
Pfam:DUF3730 403 633 2.8e-61 PFAM
low complexity region 871 883 N/A INTRINSIC
low complexity region 946 961 N/A INTRINSIC
low complexity region 1114 1123 N/A INTRINSIC
Pfam:DUF3028 1124 1712 N/A PFAM
Meta Mutation Damage Score 0.6114 question?
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.8%
Validation Efficiency 98% (79/81)
Allele List at MGI
Other mutations in this stock
Total: 81 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1700030J22Rik T C 8: 117,700,376 (GRCm39) T9A probably benign Het
Abcc5 A T 16: 20,215,784 (GRCm39) S414R possibly damaging Het
Acads C A 5: 115,249,057 (GRCm39) Q365H probably damaging Het
Ankib1 G T 5: 3,772,576 (GRCm39) Q487K probably benign Het
BC034090 T G 1: 155,108,229 (GRCm39) S11R probably damaging Het
Car12 A G 9: 66,654,945 (GRCm39) N125S probably benign Het
Casq1 A G 1: 172,044,416 (GRCm39) V137A probably benign Het
Cfap54 C A 10: 92,883,840 (GRCm39) V305F probably damaging Het
Clstn3 T C 6: 124,433,948 (GRCm39) E404G probably benign Het
Copg1 T G 6: 87,870,824 (GRCm39) L209R probably damaging Het
Cpb2 A T 14: 75,493,449 (GRCm39) Q42L possibly damaging Het
Cpd G A 11: 76,693,151 (GRCm39) Q712* probably null Het
Csmd3 T A 15: 47,450,361 (GRCm39) Y2690F Het
Dchs1 G T 7: 105,407,835 (GRCm39) T1999K probably benign Het
Ddx10 T A 9: 53,151,786 (GRCm39) T80S probably damaging Het
Dmtn G A 14: 70,854,768 (GRCm39) T69I probably damaging Het
Dnah5 T A 15: 28,370,524 (GRCm39) H2821Q probably damaging Het
Fam162b T A 10: 51,466,572 (GRCm39) probably benign Het
Fam193b A C 13: 55,690,612 (GRCm39) S717A probably benign Het
Far2 T C 6: 148,082,493 (GRCm39) F500L unknown Het
Gm12728 T C 4: 105,651,593 (GRCm39) F68L probably damaging Het
Gm1527 T A 3: 28,974,621 (GRCm39) M478K probably benign Het
Gm57858 T A 3: 36,080,070 (GRCm39) D229V possibly damaging Het
Gpd2 A T 2: 57,230,171 (GRCm39) I308F probably damaging Het
Igf2bp3 T C 6: 49,085,933 (GRCm39) T249A probably benign Het
Igfn1 C A 1: 135,889,746 (GRCm39) V2434F probably damaging Het
Inhca G A 9: 103,156,680 (GRCm39) Q127* probably null Het
Kdm5a C A 6: 120,382,879 (GRCm39) Q737K probably benign Het
Khdrbs2 T C 1: 32,372,685 (GRCm39) S120P unknown Het
Lmx1a T C 1: 167,519,609 (GRCm39) F46L probably damaging Het
Lrba C G 3: 86,232,381 (GRCm39) T776R probably damaging Het
Lrrc8c A G 5: 105,755,701 (GRCm39) N492S possibly damaging Het
Mapk3 A T 7: 126,363,967 (GRCm39) I365F Het
Mcee A G 7: 64,061,657 (GRCm39) I153M possibly damaging Het
Mllt3 T C 4: 87,710,180 (GRCm39) D415G possibly damaging Het
Muc4 A T 16: 32,575,740 (GRCm39) T1747S unknown Het
Myh14 A T 7: 44,310,466 (GRCm39) V139E probably damaging Het
Myo10 A T 15: 25,779,706 (GRCm39) I772L probably benign Het
Naa15 T G 3: 51,367,268 (GRCm39) probably null Het
Nbeal1 T A 1: 60,283,969 (GRCm39) I841N probably damaging Het
Nf1 C T 11: 79,437,102 (GRCm39) T2006I probably damaging Het
Npr2 T A 4: 43,641,254 (GRCm39) W427R probably damaging Het
Nr1h3 A T 2: 91,020,540 (GRCm39) F324L possibly damaging Het
Obscn T C 11: 58,947,740 (GRCm39) K4430E Het
Or1e1d-ps1 T A 11: 73,819,013 (GRCm39) Y61N possibly damaging Het
Or5ac21 A G 16: 59,124,391 (GRCm39) R292G probably damaging Het
Or6c2 A T 10: 129,362,530 (GRCm39) T145S probably benign Het
Or6d13 T C 6: 116,517,894 (GRCm39) L160P probably benign Het
Osgin1 T A 8: 120,172,170 (GRCm39) H321Q probably benign Het
P4ha1 A G 10: 59,186,273 (GRCm39) I251V probably benign Het
Padi2 G A 4: 140,644,997 (GRCm39) W77* probably null Het
Pkd1 T A 17: 24,800,616 (GRCm39) I3086N probably damaging Het
Plk3 T C 4: 116,988,350 (GRCm39) N360S probably benign Het
Prr14 A T 7: 127,075,614 (GRCm39) S541C probably null Het
Ptch2 C A 4: 116,971,843 (GRCm39) Q1122K possibly damaging Het
Rab3gap1 T C 1: 127,865,727 (GRCm39) V764A possibly damaging Het
Rad50 T C 11: 53,586,223 (GRCm39) I258V probably benign Het
Rapgef3 G T 15: 97,664,672 (GRCm39) R64S probably benign Het
Rbm44 A G 1: 91,079,938 (GRCm39) N42S possibly damaging Het
Ring1 T C 17: 34,240,694 (GRCm39) Y361C probably damaging Het
Robo3 T C 9: 37,329,852 (GRCm39) T1155A probably damaging Het
Rsf1 GGCGG GGCGGTGGCCGCGG 7: 97,229,122 (GRCm39) probably benign Het
Ryr3 T C 2: 112,470,502 (GRCm39) T4682A probably damaging Het
Scart1 A T 7: 139,804,790 (GRCm39) N598Y possibly damaging Het
Sema7a T C 9: 57,868,847 (GRCm39) V653A unknown Het
Slc16a13 T C 11: 70,110,105 (GRCm39) Y132C probably damaging Het
Slc24a1 A G 9: 64,855,815 (GRCm39) V364A unknown Het
Slc8a2 C T 7: 15,868,278 (GRCm39) A170V probably damaging Het
Slfn8 C T 11: 82,894,566 (GRCm39) R691Q not run Het
Snx2 T C 18: 53,327,640 (GRCm39) V122A probably benign Het
Sstr1 A T 12: 58,260,066 (GRCm39) M230L probably benign Het
Themis2 C T 4: 132,513,528 (GRCm39) V233I possibly damaging Het
Tmem106b T C 6: 13,078,167 (GRCm39) S121P probably damaging Het
Tmem63c A G 12: 87,124,722 (GRCm39) I529V probably benign Het
Tmem94 T C 11: 115,686,971 (GRCm39) probably null Het
Trmt10c A T 16: 55,854,619 (GRCm39) W339R probably damaging Het
Ugt2b1 A T 5: 87,065,578 (GRCm39) F487Y not run Het
Vmn2r91 T A 17: 18,356,838 (GRCm39) L835* probably null Het
Vps52 C A 17: 34,177,283 (GRCm39) N108K possibly damaging Het
Wdpcp T A 11: 21,661,585 (GRCm39) C286S possibly damaging Het
Zfp959 T A 17: 56,205,551 (GRCm39) H529Q possibly damaging Het
Other mutations in Focad
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00326:Focad APN 4 88,275,711 (GRCm39) missense unknown
IGL00562:Focad APN 4 88,267,046 (GRCm39) missense unknown
IGL00563:Focad APN 4 88,267,046 (GRCm39) missense unknown
IGL00900:Focad APN 4 88,047,260 (GRCm39) missense probably damaging 0.99
IGL00984:Focad APN 4 88,263,022 (GRCm39) missense unknown
IGL01016:Focad APN 4 88,310,252 (GRCm39) missense possibly damaging 0.51
IGL01069:Focad APN 4 88,244,383 (GRCm39) missense unknown
IGL01305:Focad APN 4 88,311,784 (GRCm39) missense probably benign 0.32
IGL01409:Focad APN 4 88,260,542 (GRCm39) missense unknown
IGL01447:Focad APN 4 88,244,465 (GRCm39) missense unknown
IGL01521:Focad APN 4 88,328,927 (GRCm39) makesense probably null
IGL01672:Focad APN 4 88,278,827 (GRCm39) critical splice donor site probably null
IGL01739:Focad APN 4 88,289,043 (GRCm39) missense unknown
IGL02082:Focad APN 4 88,148,815 (GRCm39) nonsense probably null
IGL02139:Focad APN 4 88,047,291 (GRCm39) critical splice donor site probably null
IGL02381:Focad APN 4 88,192,327 (GRCm39) splice site probably benign
IGL02898:Focad APN 4 88,310,234 (GRCm39) missense probably benign 0.02
certitude UTSW 4 88,096,370 (GRCm39) missense probably damaging 1.00
impression UTSW 4 88,196,479 (GRCm39) missense unknown
Microscope UTSW 4 88,260,441 (GRCm39) missense unknown
Nuance UTSW 4 88,115,083 (GRCm39) intron probably benign
Objective UTSW 4 88,319,305 (GRCm39) nonsense probably null
ANU22:Focad UTSW 4 88,311,784 (GRCm39) missense probably benign 0.32
R0025:Focad UTSW 4 88,327,196 (GRCm39) missense probably benign 0.02
R0554:Focad UTSW 4 88,267,126 (GRCm39) missense unknown
R0617:Focad UTSW 4 88,039,525 (GRCm39) unclassified probably benign
R0688:Focad UTSW 4 88,192,450 (GRCm39) missense unknown
R0746:Focad UTSW 4 88,315,451 (GRCm39) missense possibly damaging 0.84
R0907:Focad UTSW 4 88,196,498 (GRCm39) critical splice donor site probably null
R1109:Focad UTSW 4 88,114,984 (GRCm39) intron probably benign
R1136:Focad UTSW 4 88,244,417 (GRCm39) missense unknown
R1185:Focad UTSW 4 88,096,424 (GRCm39) missense probably benign 0.40
R1185:Focad UTSW 4 88,096,424 (GRCm39) missense probably benign 0.40
R1185:Focad UTSW 4 88,096,424 (GRCm39) missense probably benign 0.40
R1412:Focad UTSW 4 88,196,498 (GRCm39) critical splice donor site probably null
R1453:Focad UTSW 4 88,275,679 (GRCm39) critical splice acceptor site probably null
R1697:Focad UTSW 4 88,327,225 (GRCm39) missense probably damaging 0.98
R1739:Focad UTSW 4 88,316,128 (GRCm39) missense probably benign 0.05
R1767:Focad UTSW 4 88,275,705 (GRCm39) missense unknown
R1827:Focad UTSW 4 88,147,620 (GRCm39) missense probably benign 0.03
R1866:Focad UTSW 4 88,325,402 (GRCm39) missense possibly damaging 0.92
R1867:Focad UTSW 4 88,096,326 (GRCm39) missense probably damaging 0.99
R1929:Focad UTSW 4 88,260,449 (GRCm39) missense unknown
R1929:Focad UTSW 4 88,315,416 (GRCm39) missense probably benign 0.32
R1937:Focad UTSW 4 88,319,318 (GRCm39) start codon destroyed probably null
R1989:Focad UTSW 4 88,151,021 (GRCm39) critical splice donor site probably null
R2176:Focad UTSW 4 88,197,481 (GRCm39) missense unknown
R2393:Focad UTSW 4 88,039,567 (GRCm39) missense probably damaging 0.96
R2431:Focad UTSW 4 88,249,264 (GRCm39) missense unknown
R3195:Focad UTSW 4 88,325,588 (GRCm39) missense possibly damaging 0.85
R3196:Focad UTSW 4 88,325,588 (GRCm39) missense possibly damaging 0.85
R3730:Focad UTSW 4 88,327,162 (GRCm39) missense possibly damaging 0.52
R3772:Focad UTSW 4 88,254,398 (GRCm39) splice site probably benign
R4391:Focad UTSW 4 88,104,195 (GRCm39) missense probably damaging 1.00
R4491:Focad UTSW 4 88,278,142 (GRCm39) critical splice donor site probably null
R4492:Focad UTSW 4 88,278,142 (GRCm39) critical splice donor site probably null
R4703:Focad UTSW 4 88,260,558 (GRCm39) critical splice donor site probably null
R4788:Focad UTSW 4 88,275,706 (GRCm39) missense unknown
R4923:Focad UTSW 4 88,115,083 (GRCm39) intron probably benign
R5026:Focad UTSW 4 88,262,819 (GRCm39) missense unknown
R5122:Focad UTSW 4 88,325,602 (GRCm39) critical splice donor site probably null
R5153:Focad UTSW 4 88,278,121 (GRCm39) missense unknown
R5369:Focad UTSW 4 88,039,610 (GRCm39) splice site probably benign
R5414:Focad UTSW 4 88,328,939 (GRCm39) utr 3 prime probably benign
R5839:Focad UTSW 4 88,115,083 (GRCm39) intron probably benign
R5916:Focad UTSW 4 88,275,778 (GRCm39) missense unknown
R5953:Focad UTSW 4 88,147,572 (GRCm39) missense probably benign 0.01
R5991:Focad UTSW 4 88,319,256 (GRCm39) missense possibly damaging 0.91
R6230:Focad UTSW 4 88,260,441 (GRCm39) missense unknown
R6247:Focad UTSW 4 88,325,377 (GRCm39) missense possibly damaging 0.92
R6324:Focad UTSW 4 88,319,305 (GRCm39) nonsense probably null
R6543:Focad UTSW 4 88,197,493 (GRCm39) missense unknown
R6639:Focad UTSW 4 88,196,479 (GRCm39) missense unknown
R6802:Focad UTSW 4 88,262,921 (GRCm39) missense unknown
R6802:Focad UTSW 4 88,192,440 (GRCm39) missense unknown
R6866:Focad UTSW 4 88,321,623 (GRCm39) missense probably benign 0.34
R6902:Focad UTSW 4 88,148,713 (GRCm39) missense unknown
R6928:Focad UTSW 4 88,267,112 (GRCm39) missense unknown
R7036:Focad UTSW 4 88,042,874 (GRCm39) missense probably benign 0.05
R7057:Focad UTSW 4 88,192,342 (GRCm39) missense unknown
R7077:Focad UTSW 4 88,328,914 (GRCm39) missense unknown
R7242:Focad UTSW 4 88,228,143 (GRCm39) missense unknown
R7357:Focad UTSW 4 88,147,572 (GRCm39) missense probably benign 0.19
R7427:Focad UTSW 4 88,286,988 (GRCm39) missense unknown
R7582:Focad UTSW 4 88,147,615 (GRCm39) missense probably benign 0.00
R7661:Focad UTSW 4 88,221,772 (GRCm39) missense unknown
R7688:Focad UTSW 4 88,096,370 (GRCm39) missense probably damaging 1.00
R7789:Focad UTSW 4 88,147,643 (GRCm39) missense unknown
R7880:Focad UTSW 4 88,319,407 (GRCm39) missense unknown
R7887:Focad UTSW 4 88,100,853 (GRCm39) missense probably damaging 1.00
R8024:Focad UTSW 4 88,315,237 (GRCm39) missense unknown
R8129:Focad UTSW 4 88,151,000 (GRCm39) missense unknown
R8369:Focad UTSW 4 88,150,905 (GRCm39) missense unknown
R8837:Focad UTSW 4 88,072,905 (GRCm39) missense probably damaging 0.96
R9014:Focad UTSW 4 88,275,763 (GRCm39) missense unknown
R9282:Focad UTSW 4 88,115,059 (GRCm39) missense unknown
R9431:Focad UTSW 4 88,321,583 (GRCm39) missense unknown
R9435:Focad UTSW 4 88,267,076 (GRCm39) missense unknown
R9676:Focad UTSW 4 88,273,682 (GRCm39) missense unknown
X0035:Focad UTSW 4 88,316,159 (GRCm39) missense possibly damaging 0.86
Predicted Primers PCR Primer
(F):5'- GCATGGGGTACTTTCTGCC -3'
(R):5'- GCTTTTAAAGTCTTGACAATTCTCG -3'

Sequencing Primer
(F):5'- AGACAGGGTATTGCTACATTGCCC -3'
(R):5'- CGAAAAGCGGTCATCATA -3'
Posted On 2019-09-13