Mutagenetix > Incidental Mutation

Incidental Mutation 'R7380:Lrrc8c'

572625

Institutional Source

Beutler Lab

Gene Symbol

Lrrc8c

Ensembl Gene

ENSMUSG00000054720

Gene Name

leucine rich repeat containing 8 family, member C

Synonyms

E430036I04Rik

MMRRC Submission

045462-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7380 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

105667254-105760884 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 105755701 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Asparagine to Serine at position 492 (N492S)

Ref Sequence

ENSEMBL: ENSMUSP00000066015 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000067924] [ENSMUST00000153754]

AlphaFold

Q8R502

Predicted Effect

possibly damaging
Transcript: ENSMUST00000067924
AA Change: N492S

PolyPhen 2 Score 0.714 (Sensitivity: 0.86; Specificity: 0.92)

SMART Domains

Protein: ENSMUSP00000066015
Gene: ENSMUSG00000054720
AA Change: N492S

Domain	Start	End	E-Value	Type
Pfam:Pannexin_like	1	338	5.7e-152	PFAM
low complexity region	398	407	N/A	INTRINSIC
LRR	588	611	3.97e0	SMART
LRR	613	635	1.81e2	SMART
LRR	636	658	2.2e1	SMART
LRR_TYP	659	682	1.45e-2	SMART
LRR	684	703	3.56e2	SMART
LRR	705	728	2.92e1	SMART
LRR	751	774	1.09e1	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000153754

SMART Domains

Protein: ENSMUSP00000114899
Gene: ENSMUSG00000054720

Domain	Start	End	E-Value	Type
Pfam:DUF3733	1	65	4.8e-35	PFAM
low complexity region	78	93	N/A	INTRINSIC
Pfam:DUF3733	99	158	1.7e-26	PFAM

Meta Mutation Damage Score

0.1245

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

98% (79/81)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit a reduction in body weight, white adipose tissue weight, and insulin resistance on a high-fat diet, indicating protection from diet-induced obesity and insulin resistance. [provided by MGI curators]

Allele List at MGI

All alleles(1) : Gene trapped(1)

Other mutations in this stock

Total: 81 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700030J22Rik	T	C	8: 117,700,376 (GRCm39)	T9A	probably benign	Het
Abcc5	A	T	16: 20,215,784 (GRCm39)	S414R	possibly damaging	Het
Acads	C	A	5: 115,249,057 (GRCm39)	Q365H	probably damaging	Het
Ankib1	G	T	5: 3,772,576 (GRCm39)	Q487K	probably benign	Het
BC034090	T	G	1: 155,108,229 (GRCm39)	S11R	probably damaging	Het
Car12	A	G	9: 66,654,945 (GRCm39)	N125S	probably benign	Het
Casq1	A	G	1: 172,044,416 (GRCm39)	V137A	probably benign	Het
Cfap54	C	A	10: 92,883,840 (GRCm39)	V305F	probably damaging	Het
Clstn3	T	C	6: 124,433,948 (GRCm39)	E404G	probably benign	Het
Copg1	T	G	6: 87,870,824 (GRCm39)	L209R	probably damaging	Het
Cpb2	A	T	14: 75,493,449 (GRCm39)	Q42L	possibly damaging	Het
Cpd	G	A	11: 76,693,151 (GRCm39)	Q712*	probably null	Het
Csmd3	T	A	15: 47,450,361 (GRCm39)	Y2690F		Het
Dchs1	G	T	7: 105,407,835 (GRCm39)	T1999K	probably benign	Het
Ddx10	T	A	9: 53,151,786 (GRCm39)	T80S	probably damaging	Het
Dmtn	G	A	14: 70,854,768 (GRCm39)	T69I	probably damaging	Het
Dnah5	T	A	15: 28,370,524 (GRCm39)	H2821Q	probably damaging	Het
Fam162b	T	A	10: 51,466,572 (GRCm39)		probably benign	Het
Fam193b	A	C	13: 55,690,612 (GRCm39)	S717A	probably benign	Het
Far2	T	C	6: 148,082,493 (GRCm39)	F500L	unknown	Het
Focad	T	A	4: 88,192,435 (GRCm39)	V588D	unknown	Het
Gm12728	T	C	4: 105,651,593 (GRCm39)	F68L	probably damaging	Het
Gm1527	T	A	3: 28,974,621 (GRCm39)	M478K	probably benign	Het
Gm57858	T	A	3: 36,080,070 (GRCm39)	D229V	possibly damaging	Het
Gpd2	A	T	2: 57,230,171 (GRCm39)	I308F	probably damaging	Het
Igf2bp3	T	C	6: 49,085,933 (GRCm39)	T249A	probably benign	Het
Igfn1	C	A	1: 135,889,746 (GRCm39)	V2434F	probably damaging	Het
Inhca	G	A	9: 103,156,680 (GRCm39)	Q127*	probably null	Het
Kdm5a	C	A	6: 120,382,879 (GRCm39)	Q737K	probably benign	Het
Khdrbs2	T	C	1: 32,372,685 (GRCm39)	S120P	unknown	Het
Lmx1a	T	C	1: 167,519,609 (GRCm39)	F46L	probably damaging	Het
Lrba	C	G	3: 86,232,381 (GRCm39)	T776R	probably damaging	Het
Mapk3	A	T	7: 126,363,967 (GRCm39)	I365F		Het
Mcee	A	G	7: 64,061,657 (GRCm39)	I153M	possibly damaging	Het
Mllt3	T	C	4: 87,710,180 (GRCm39)	D415G	possibly damaging	Het
Muc4	A	T	16: 32,575,740 (GRCm39)	T1747S	unknown	Het
Myh14	A	T	7: 44,310,466 (GRCm39)	V139E	probably damaging	Het
Myo10	A	T	15: 25,779,706 (GRCm39)	I772L	probably benign	Het
Naa15	T	G	3: 51,367,268 (GRCm39)		probably null	Het
Nbeal1	T	A	1: 60,283,969 (GRCm39)	I841N	probably damaging	Het
Nf1	C	T	11: 79,437,102 (GRCm39)	T2006I	probably damaging	Het
Npr2	T	A	4: 43,641,254 (GRCm39)	W427R	probably damaging	Het
Nr1h3	A	T	2: 91,020,540 (GRCm39)	F324L	possibly damaging	Het
Obscn	T	C	11: 58,947,740 (GRCm39)	K4430E		Het
Or1e1d-ps1	T	A	11: 73,819,013 (GRCm39)	Y61N	possibly damaging	Het
Or5ac21	A	G	16: 59,124,391 (GRCm39)	R292G	probably damaging	Het
Or6c2	A	T	10: 129,362,530 (GRCm39)	T145S	probably benign	Het
Or6d13	T	C	6: 116,517,894 (GRCm39)	L160P	probably benign	Het
Osgin1	T	A	8: 120,172,170 (GRCm39)	H321Q	probably benign	Het
P4ha1	A	G	10: 59,186,273 (GRCm39)	I251V	probably benign	Het
Padi2	G	A	4: 140,644,997 (GRCm39)	W77*	probably null	Het
Pkd1	T	A	17: 24,800,616 (GRCm39)	I3086N	probably damaging	Het
Plk3	T	C	4: 116,988,350 (GRCm39)	N360S	probably benign	Het
Prr14	A	T	7: 127,075,614 (GRCm39)	S541C	probably null	Het
Ptch2	C	A	4: 116,971,843 (GRCm39)	Q1122K	possibly damaging	Het
Rab3gap1	T	C	1: 127,865,727 (GRCm39)	V764A	possibly damaging	Het
Rad50	T	C	11: 53,586,223 (GRCm39)	I258V	probably benign	Het
Rapgef3	G	T	15: 97,664,672 (GRCm39)	R64S	probably benign	Het
Rbm44	A	G	1: 91,079,938 (GRCm39)	N42S	possibly damaging	Het
Ring1	T	C	17: 34,240,694 (GRCm39)	Y361C	probably damaging	Het
Robo3	T	C	9: 37,329,852 (GRCm39)	T1155A	probably damaging	Het
Rsf1	GGCGG	GGCGGTGGCCGCGG	7: 97,229,122 (GRCm39)		probably benign	Het
Ryr3	T	C	2: 112,470,502 (GRCm39)	T4682A	probably damaging	Het
Scart1	A	T	7: 139,804,790 (GRCm39)	N598Y	possibly damaging	Het
Sema7a	T	C	9: 57,868,847 (GRCm39)	V653A	unknown	Het
Slc16a13	T	C	11: 70,110,105 (GRCm39)	Y132C	probably damaging	Het
Slc24a1	A	G	9: 64,855,815 (GRCm39)	V364A	unknown	Het
Slc8a2	C	T	7: 15,868,278 (GRCm39)	A170V	probably damaging	Het
Slfn8	C	T	11: 82,894,566 (GRCm39)	R691Q	not run	Het
Snx2	T	C	18: 53,327,640 (GRCm39)	V122A	probably benign	Het
Sstr1	A	T	12: 58,260,066 (GRCm39)	M230L	probably benign	Het
Themis2	C	T	4: 132,513,528 (GRCm39)	V233I	possibly damaging	Het
Tmem106b	T	C	6: 13,078,167 (GRCm39)	S121P	probably damaging	Het
Tmem63c	A	G	12: 87,124,722 (GRCm39)	I529V	probably benign	Het
Tmem94	T	C	11: 115,686,971 (GRCm39)		probably null	Het
Trmt10c	A	T	16: 55,854,619 (GRCm39)	W339R	probably damaging	Het
Ugt2b1	A	T	5: 87,065,578 (GRCm39)	F487Y	not run	Het
Vmn2r91	T	A	17: 18,356,838 (GRCm39)	L835*	probably null	Het
Vps52	C	A	17: 34,177,283 (GRCm39)	N108K	possibly damaging	Het
Wdpcp	T	A	11: 21,661,585 (GRCm39)	C286S	possibly damaging	Het
Zfp959	T	A	17: 56,205,551 (GRCm39)	H529Q	possibly damaging	Het

Other mutations in Lrrc8c

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00538:Lrrc8c	APN	5	105,755,076 (GRCm39)	missense	probably damaging	0.99
IGL00736:Lrrc8c	APN	5	105,754,980 (GRCm39)	missense	probably damaging	1.00
IGL00822:Lrrc8c	APN	5	105,756,174 (GRCm39)	missense	probably benign	0.04
IGL02009:Lrrc8c	APN	5	105,755,257 (GRCm39)	missense	probably damaging	1.00
IGL02156:Lrrc8c	APN	5	105,755,359 (GRCm39)	missense	probably damaging	1.00
IGL02266:Lrrc8c	APN	5	105,756,114 (GRCm39)	missense	probably benign	0.30
IGL02268:Lrrc8c	APN	5	105,755,764 (GRCm39)	missense	probably damaging	1.00
IGL02487:Lrrc8c	APN	5	105,754,457 (GRCm39)	missense	probably benign
IGL02536:Lrrc8c	APN	5	105,755,038 (GRCm39)	missense	probably benign	0.00
IGL02672:Lrrc8c	APN	5	105,755,224 (GRCm39)	missense	possibly damaging	0.85
IGL02860:Lrrc8c	APN	5	105,727,481 (GRCm39)	splice site	probably benign
IGL03395:Lrrc8c	APN	5	105,754,495 (GRCm39)	missense	probably benign
Hand_grenade	UTSW	5	105,754,954 (GRCm39)	missense	probably damaging	1.00
Horseshoe	UTSW	5	105,755,488 (GRCm39)	missense	probably damaging	1.00
P0014:Lrrc8c	UTSW	5	105,755,110 (GRCm39)	missense	probably benign	0.06
PIT4504001:Lrrc8c	UTSW	5	105,756,403 (GRCm39)	missense	probably benign
PIT4651001:Lrrc8c	UTSW	5	105,756,189 (GRCm39)	missense	probably benign	0.04
R0196:Lrrc8c	UTSW	5	105,754,636 (GRCm39)	missense	probably benign	0.18
R0454:Lrrc8c	UTSW	5	105,754,965 (GRCm39)	missense	probably damaging	1.00
R0565:Lrrc8c	UTSW	5	105,754,894 (GRCm39)	missense	probably damaging	0.98
R0673:Lrrc8c	UTSW	5	105,755,544 (GRCm39)	missense	probably damaging	0.99
R0722:Lrrc8c	UTSW	5	105,727,414 (GRCm39)	missense	probably damaging	1.00
R0815:Lrrc8c	UTSW	5	105,756,400 (GRCm39)	missense	probably damaging	1.00
R1177:Lrrc8c	UTSW	5	105,754,702 (GRCm39)	missense	probably benign	0.40
R1411:Lrrc8c	UTSW	5	105,756,045 (GRCm39)	missense	probably damaging	0.96
R1486:Lrrc8c	UTSW	5	105,755,395 (GRCm39)	missense	probably damaging	1.00
R1551:Lrrc8c	UTSW	5	105,756,090 (GRCm39)	missense	probably damaging	1.00
R1662:Lrrc8c	UTSW	5	105,754,623 (GRCm39)	missense	probably benign	0.22
R1714:Lrrc8c	UTSW	5	105,755,157 (GRCm39)	missense	possibly damaging	0.93
R1770:Lrrc8c	UTSW	5	105,754,603 (GRCm39)	missense	probably damaging	1.00
R2104:Lrrc8c	UTSW	5	105,755,224 (GRCm39)	missense	possibly damaging	0.85
R2139:Lrrc8c	UTSW	5	105,754,558 (GRCm39)	missense	probably damaging	1.00
R4425:Lrrc8c	UTSW	5	105,755,755 (GRCm39)	missense	probably benign	0.22
R4670:Lrrc8c	UTSW	5	105,756,240 (GRCm39)	missense	probably benign
R4897:Lrrc8c	UTSW	5	105,755,955 (GRCm39)	missense	probably benign	0.01
R4968:Lrrc8c	UTSW	5	105,754,993 (GRCm39)	missense	probably damaging	1.00
R5114:Lrrc8c	UTSW	5	105,755,349 (GRCm39)	missense	probably damaging	1.00
R5580:Lrrc8c	UTSW	5	105,755,553 (GRCm39)	missense	probably benign	0.00
R5804:Lrrc8c	UTSW	5	105,727,423 (GRCm39)	missense	possibly damaging	0.88
R5918:Lrrc8c	UTSW	5	105,756,117 (GRCm39)	missense	possibly damaging	0.68
R6293:Lrrc8c	UTSW	5	105,754,612 (GRCm39)	missense	probably damaging	1.00
R6303:Lrrc8c	UTSW	5	105,756,475 (GRCm39)	missense	probably benign	0.31
R6304:Lrrc8c	UTSW	5	105,756,475 (GRCm39)	missense	probably benign	0.31
R7271:Lrrc8c	UTSW	5	105,755,853 (GRCm39)	missense	probably benign	0.02
R7341:Lrrc8c	UTSW	5	105,755,133 (GRCm39)	missense	probably damaging	1.00
R7630:Lrrc8c	UTSW	5	105,755,568 (GRCm39)	missense	probably damaging	0.99
R7789:Lrrc8c	UTSW	5	105,755,066 (GRCm39)	missense	probably damaging	1.00
R8128:Lrrc8c	UTSW	5	105,755,488 (GRCm39)	missense	probably damaging	1.00
R8229:Lrrc8c	UTSW	5	105,754,402 (GRCm39)	missense	probably benign	0.00
R8247:Lrrc8c	UTSW	5	105,756,310 (GRCm39)	missense	probably damaging	1.00
R8248:Lrrc8c	UTSW	5	105,755,733 (GRCm39)	missense	probably benign
R8890:Lrrc8c	UTSW	5	105,754,954 (GRCm39)	missense	probably damaging	1.00
R9254:Lrrc8c	UTSW	5	105,756,356 (GRCm39)	nonsense	probably null
R9379:Lrrc8c	UTSW	5	105,756,356 (GRCm39)	nonsense	probably null
R9416:Lrrc8c	UTSW	5	105,756,163 (GRCm39)	missense	possibly damaging	0.95

Predicted Primers

PCR Primer
(F):5'- GAAGCTGCAGACAAATGCC -3'
(R):5'- ACGTTGCTCTTGATGGAAAGG -3'

Sequencing Primer
(F):5'- TGCCGCTGATCATGCTG -3'
(R):5'- CTCTTGATGGAAAGGATTTTAAGGC -3'

Posted On

2019-09-13