Mutagenetix > Incidental Mutation

Incidental Mutation 'IGL00427:Vmn1r238'

5734

Institutional Source

Australian Phenomics Network (link to record)

Gene Symbol

Vmn1r238

Ensembl Gene

ENSMUSG00000091539

Gene Name

vomeronasal 1 receptor, 238

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.058) question?

Stock #

IGL00427

Quality Score

Status

Chromosome

Chromosomal Location

3122492-3123412 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 3123243 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tyrosine to Phenylalanine at position 57 (Y57F)

Ref Sequence

ENSEMBL: ENSMUSP00000129804 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000165255]

AlphaFold

E9Q373

Predicted Effect

probably benign
Transcript: ENSMUST00000165255
AA Change: Y57F

PolyPhen 2 Score 0.007 (Sensitivity: 0.96; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000129804
Gene: ENSMUSG00000091539
AA Change: Y57F

Domain	Start	End	E-Value	Type
Pfam:TAS2R	7	302	5.3e-8	PFAM
Pfam:7tm_1	27	292	8.8e-7	PFAM
Pfam:V1R	34	298	1.9e-33	PFAM

Coding Region Coverage

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 42 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adcy3	A	G	12: 4,244,357 (GRCm39)	D289G	probably damaging	Het
Adnp	C	T	2: 168,024,482 (GRCm39)	D938N	probably benign	Het
Arpin	T	A	7: 79,577,423 (GRCm39)	N208I	probably benign	Het
Cby3	A	G	11: 50,248,638 (GRCm39)		probably benign	Het
Cmklr2	A	T	1: 63,222,497 (GRCm39)	I246N	probably damaging	Het
Cnih4	T	A	1: 180,981,312 (GRCm39)	S28T	probably damaging	Het
D130052B06Rik	G	T	11: 33,573,558 (GRCm39)	V97L	possibly damaging	Het
Dchs1	T	C	7: 105,407,631 (GRCm39)	E2067G	probably damaging	Het
Dennd6a	C	T	14: 26,329,768 (GRCm39)	T113I	probably damaging	Het
Dock4	T	A	12: 40,882,305 (GRCm39)	F1590L	possibly damaging	Het
Dop1a	G	T	9: 86,403,553 (GRCm39)	Q1582H	probably benign	Het
Dop1a	A	T	9: 86,403,552 (GRCm39)	Q1582L	probably damaging	Het
Dop1a	C	A	9: 86,403,551 (GRCm39)	Q1582K	possibly damaging	Het
Ebna1bp2	A	T	4: 118,483,018 (GRCm39)	K291M	probably damaging	Het
Evpl	G	T	11: 116,125,331 (GRCm39)	Q73K	probably benign	Het
Fam131b	G	T	6: 42,295,895 (GRCm39)	T139K	probably damaging	Het
Golga3	A	G	5: 110,368,753 (GRCm39)	T1358A	probably damaging	Het
Hgf	G	A	5: 16,783,484 (GRCm39)	D265N	probably benign	Het
Homer1	A	G	13: 93,538,622 (GRCm39)	N333S	probably benign	Het
Igkv17-134	A	T	6: 67,697,968 (GRCm39)		probably benign	Het
Il16	T	C	7: 83,301,666 (GRCm39)	D152G	probably benign	Het
Ireb2	T	C	9: 54,806,766 (GRCm39)		probably benign	Het
Itgb2	C	T	10: 77,393,790 (GRCm39)	T410I	probably benign	Het
Kctd14	C	A	7: 97,106,919 (GRCm39)	A111E	possibly damaging	Het
Lmod3	A	C	6: 97,229,258 (GRCm39)	V92G	probably damaging	Het
Lmtk2	A	G	5: 144,070,973 (GRCm39)	D83G	probably damaging	Het
Myh1	A	G	11: 67,111,691 (GRCm39)	E1682G	probably damaging	Het
Myo9a	T	A	9: 59,750,342 (GRCm39)		probably benign	Het
Nlrc4	T	C	17: 74,754,087 (GRCm39)	N99D	probably benign	Het
P2rx3	A	G	2: 84,865,616 (GRCm39)	Y10H	probably damaging	Het
Pcsk7	C	A	9: 45,838,958 (GRCm39)	D623E	probably benign	Het
Plxna1	A	G	6: 89,297,980 (GRCm39)	I1766T	probably damaging	Het
Ptk7	T	C	17: 46,885,353 (GRCm39)	Y691C	probably damaging	Het
Rec8	A	T	14: 55,856,108 (GRCm39)	T17S	probably damaging	Het
Rtraf-ps	A	C	3: 88,484,230 (GRCm39)		probably benign	Het
Ryr1	T	C	7: 28,804,162 (GRCm39)		probably benign	Het
Scg3	T	G	9: 75,570,519 (GRCm39)	K345T	probably damaging	Het
Serpina3b	A	T	12: 104,099,200 (GRCm39)	K238N	probably benign	Het
Slc38a9	T	A	13: 112,838,152 (GRCm39)	S306T	probably damaging	Het
Txndc16	A	G	14: 45,382,547 (GRCm39)		probably benign	Het
Vmn2r104	A	T	17: 20,258,501 (GRCm39)	S548T	probably damaging	Het
Xrcc1	T	A	7: 24,247,309 (GRCm39)		probably null	Het

Other mutations in Vmn1r238

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01385:Vmn1r238	APN	18	3,122,770 (GRCm39)	missense	possibly damaging	0.83
IGL02716:Vmn1r238	APN	18	3,123,124 (GRCm39)	missense	probably damaging	1.00
R1219:Vmn1r238	UTSW	18	3,123,135 (GRCm39)	missense	possibly damaging	0.81
R1568:Vmn1r238	UTSW	18	3,123,358 (GRCm39)	missense	probably benign	0.00
R1864:Vmn1r238	UTSW	18	3,123,040 (GRCm39)	nonsense	probably null
R3024:Vmn1r238	UTSW	18	3,123,305 (GRCm39)	missense	probably benign	0.13
R4291:Vmn1r238	UTSW	18	3,123,214 (GRCm39)	nonsense	probably null
R4304:Vmn1r238	UTSW	18	3,123,040 (GRCm39)	nonsense	probably null
R4586:Vmn1r238	UTSW	18	3,123,294 (GRCm39)	missense	probably damaging	1.00
R4664:Vmn1r238	UTSW	18	3,123,300 (GRCm39)	missense	probably damaging	0.99
R5123:Vmn1r238	UTSW	18	3,123,243 (GRCm39)	missense	probably benign
R5430:Vmn1r238	UTSW	18	3,122,521 (GRCm39)	missense	possibly damaging	0.63
R5834:Vmn1r238	UTSW	18	3,123,168 (GRCm39)	missense	probably benign
R7186:Vmn1r238	UTSW	18	3,122,661 (GRCm39)	missense	probably damaging	0.99
R7206:Vmn1r238	UTSW	18	3,122,623 (GRCm39)	missense	possibly damaging	0.94
R7308:Vmn1r238	UTSW	18	3,122,875 (GRCm39)	missense	probably benign	0.09
R7346:Vmn1r238	UTSW	18	3,123,151 (GRCm39)	missense	probably damaging	1.00
R7467:Vmn1r238	UTSW	18	3,123,393 (GRCm39)	missense	probably benign	0.10
R7571:Vmn1r238	UTSW	18	3,122,721 (GRCm39)	missense	probably damaging	1.00
R7808:Vmn1r238	UTSW	18	3,123,033 (GRCm39)	missense	probably benign	0.03
R8085:Vmn1r238	UTSW	18	3,123,151 (GRCm39)	missense	probably damaging	1.00
R8086:Vmn1r238	UTSW	18	3,123,250 (GRCm39)	missense	probably damaging	1.00
R8325:Vmn1r238	UTSW	18	3,122,529 (GRCm39)	missense	probably benign	0.00
R8423:Vmn1r238	UTSW	18	3,123,365 (GRCm39)	nonsense	probably null
R8747:Vmn1r238	UTSW	18	3,123,232 (GRCm39)	missense	possibly damaging	0.87
R8930:Vmn1r238	UTSW	18	3,123,127 (GRCm39)	missense	probably benign	0.03
R8932:Vmn1r238	UTSW	18	3,123,127 (GRCm39)	missense	probably benign	0.03
R9279:Vmn1r238	UTSW	18	3,122,994 (GRCm39)	missense	probably damaging	0.99
R9382:Vmn1r238	UTSW	18	3,122,676 (GRCm39)	missense	probably damaging	0.99
R9644:Vmn1r238	UTSW	18	3,122,635 (GRCm39)	missense	probably benign	0.10
R9725:Vmn1r238	UTSW	18	3,122,577 (GRCm39)	missense	probably benign	0.00
Z1177:Vmn1r238	UTSW	18	3,122,505 (GRCm39)	missense	probably benign	0.00

Posted On

2012-04-20