Mutagenetix > Incidental Mutation

Incidental Mutation 'R7392:Lrch3'

573548

Institutional Source

Beutler Lab

Gene Symbol

Lrch3

Ensembl Gene

ENSMUSG00000022801

Gene Name

leucine-rich repeats and calponin homology (CH) domain containing 3

Synonyms

LOC385628, 2210409B11Rik

MMRRC Submission

045474-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.115) question?

Stock #

R7392 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

32734470-32836017 bp(+) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

T to A at 32807125 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Leucine to Stop codon at position 466 (L466*)

Ref Sequence

ENSEMBL: ENSMUSP00000023491 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000023491] [ENSMUST00000135193] [ENSMUST00000165616] [ENSMUST00000165826] [ENSMUST00000170201] [ENSMUST00000170899]

AlphaFold

Q8BVU0

Predicted Effect

probably null
Transcript: ENSMUST00000023491
AA Change: L466*

SMART Domains

Protein: ENSMUSP00000023491
Gene: ENSMUSG00000022801
AA Change: L466*

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	31	44	N/A	INTRINSIC
LRR	104	126	2.54e1	SMART
LRR	127	150	2.86e-1	SMART
LRR	172	194	4.44e0	SMART
LRR	195	218	4.33e1	SMART
LRR	240	263	2.76e1	SMART
low complexity region	482	493	N/A	INTRINSIC
low complexity region	539	554	N/A	INTRINSIC
CH	651	754	9.24e-15	SMART
low complexity region	759	774	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000135193
AA Change: L466*

SMART Domains

Protein: ENSMUSP00000130708
Gene: ENSMUSG00000022801
AA Change: L466*

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	31	44	N/A	INTRINSIC
LRR	104	126	2.54e1	SMART
LRR	127	150	2.86e-1	SMART
LRR	172	194	4.44e0	SMART
LRR	195	218	4.33e1	SMART
LRR	240	263	2.76e1	SMART
low complexity region	482	493	N/A	INTRINSIC
low complexity region	539	554	N/A	INTRINSIC
CH	651	755	6.79e-13	SMART
transmembrane domain	771	793	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000142290
AA Change: L14*

SMART Domains

Protein: ENSMUSP00000117302
Gene: ENSMUSG00000022801
AA Change: L14*

Domain	Start	End	E-Value	Type
low complexity region	31	42	N/A	INTRINSIC
low complexity region	88	103	N/A	INTRINSIC
SCOP:d1h67a_	201	253	1e-11	SMART
Blast:CH	205	253	6e-27	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000163428

SMART Domains

Protein: ENSMUSP00000133034
Gene: ENSMUSG00000022801

Domain	Start	End	E-Value	Type
low complexity region	122	137	N/A	INTRINSIC
SCOP:d1h67a_	230	265	9e-5	SMART
Blast:CH	234	265	7e-14	BLAST

Predicted Effect

probably null
Transcript: ENSMUST00000165616
AA Change: L312*

SMART Domains

Protein: ENSMUSP00000130009
Gene: ENSMUSG00000022801
AA Change: L312*

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	31	44	N/A	INTRINSIC
Blast:LRR	89	113	1e-6	BLAST
Blast:LRR	114	137	3e-7	BLAST
low complexity region	328	339	N/A	INTRINSIC
low complexity region	385	400	N/A	INTRINSIC
CH	497	600	9.24e-15	SMART
low complexity region	605	620	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000165826
AA Change: L89*

SMART Domains

Protein: ENSMUSP00000126308
Gene: ENSMUSG00000022801
AA Change: L89*

Domain	Start	End	E-Value	Type
low complexity region	105	116	N/A	INTRINSIC
low complexity region	162	177	N/A	INTRINSIC

Predicted Effect

probably null
Transcript: ENSMUST00000170201
AA Change: L466*

SMART Domains

Protein: ENSMUSP00000126964
Gene: ENSMUSG00000022801
AA Change: L466*

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	31	44	N/A	INTRINSIC
LRR	104	126	2.54e1	SMART
LRR	127	150	2.86e-1	SMART
LRR	172	194	4.44e0	SMART
LRR	195	218	4.33e1	SMART
LRR	240	263	2.76e1	SMART
low complexity region	482	493	N/A	INTRINSIC
low complexity region	539	554	N/A	INTRINSIC
CH	615	718	9.24e-15	SMART
low complexity region	723	738	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000170899

SMART Domains

Protein: ENSMUSP00000127547
Gene: ENSMUSG00000022801

Domain	Start	End	E-Value	Type
low complexity region	2	13	N/A	INTRINSIC
low complexity region	31	44	N/A	INTRINSIC
LRR	104	126	2.54e1	SMART
LRR	127	150	2.86e-1	SMART
LRR	172	194	4.44e0	SMART
LRR	195	218	4.33e1	SMART
LRR	240	263	2.76e1	SMART
low complexity region	489	504	N/A	INTRINSIC
CH	565	668	9.24e-15	SMART
low complexity region	673	688	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.8%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 83 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2610021A01Rik	T	A	7: 41,275,990 (GRCm39)	F564L	probably damaging	Het
Abcc2	T	C	19: 43,797,126 (GRCm39)	I499T	probably damaging	Het
Adamts13	C	T	2: 26,879,336 (GRCm39)	R630C	probably damaging	Het
Adgrv1	A	T	13: 81,708,808 (GRCm39)	F1199I	probably damaging	Het
Agbl5	G	A	5: 31,048,115 (GRCm39)		probably null	Het
Anks1b	A	G	10: 90,516,648 (GRCm39)	D881G	possibly damaging	Het
Arap2	A	T	5: 62,855,728 (GRCm39)	S569R	possibly damaging	Het
Arhgap15	T	C	2: 43,953,786 (GRCm39)	S171P	possibly damaging	Het
Arhgef11	G	A	3: 87,624,482 (GRCm39)		probably null	Het
Baz1a	C	A	12: 54,945,550 (GRCm39)	L1271F	probably damaging	Het
Bdnf	A	C	2: 109,554,275 (GRCm39)	K216N	probably benign	Het
Bmp7	C	T	2: 172,711,998 (GRCm39)	D409N	probably damaging	Het
Bnip5	A	T	17: 29,127,351 (GRCm39)	D219E	probably benign	Het
Cacna1c	T	A	6: 118,718,881 (GRCm39)	I390F		Het
Chd8	A	G	14: 52,470,312 (GRCm39)	S433P	probably benign	Het
Clrn2	A	G	5: 45,621,251 (GRCm39)	E215G	possibly damaging	Het
Col19a1	T	G	1: 24,573,115 (GRCm39)	D219A	unknown	Het
Col2a1	G	A	15: 97,878,032 (GRCm39)	R1036*	probably null	Het
Copg1	T	A	6: 87,867,257 (GRCm39)	V110D	probably benign	Het
Cpd	C	T	11: 76,692,605 (GRCm39)	G744D	probably damaging	Het
Crygs	G	A	16: 22,625,252 (GRCm39)	P63L	probably benign	Het
Dcn	A	G	10: 97,345,860 (GRCm39)	D224G	probably damaging	Het
Dnah7a	T	C	1: 53,540,820 (GRCm39)	E2518G	probably benign	Het
Efcab6	C	A	15: 83,873,152 (GRCm39)	R197L	probably benign	Het
Efr3b	T	A	12: 4,019,588 (GRCm39)	Y723F	probably benign	Het
Enam	A	G	5: 88,649,523 (GRCm39)	N344S	probably damaging	Het
Erich4	A	G	7: 25,315,101 (GRCm39)	I58T	possibly damaging	Het
Esrp1	A	G	4: 11,338,809 (GRCm39)	V665A	probably benign	Het
Etf1	G	A	18: 35,039,103 (GRCm39)	T388I	probably benign	Het
Faf1	A	G	4: 109,652,040 (GRCm39)	T244A	probably benign	Het
Fbn1	T	C	2: 125,185,844 (GRCm39)	D1610G	probably damaging	Het
Fcgbpl1	C	T	7: 27,863,797 (GRCm39)	T2523M	possibly damaging	Het
Frem1	G	T	4: 82,932,064 (GRCm39)	F212L	probably benign	Het
Fuom	T	A	7: 139,681,073 (GRCm39)	D85V	probably damaging	Het
Gcfc2	T	C	6: 81,919,993 (GRCm39)		probably null	Het
Gpr37	C	T	6: 25,688,786 (GRCm39)	A104T	probably benign	Het
Hsp90ab1	G	C	17: 45,879,974 (GRCm39)	T514S	probably benign	Het
Ifnl2	A	G	7: 28,209,094 (GRCm39)	F74L	probably benign	Het
Ipo11	G	A	13: 107,028,199 (GRCm39)	R367*	probably null	Het
Itpr2	T	C	6: 146,260,838 (GRCm39)	D963G	possibly damaging	Het
Krt15	A	T	11: 100,026,386 (GRCm39)	V100E	possibly damaging	Het
Lrfn5	A	T	12: 61,887,090 (GRCm39)	T293S	probably benign	Het
Lrp5	A	G	19: 3,660,199 (GRCm39)	I955T	probably damaging	Het
Lrrc4b	C	T	7: 44,111,439 (GRCm39)	T437M	probably damaging	Het
Man1a	A	G	10: 53,795,283 (GRCm39)	Y657H	probably damaging	Het
Mapkap1	G	T	2: 34,325,166 (GRCm39)	R94L	probably damaging	Het
Mtmr4	T	A	11: 87,495,383 (GRCm39)	L480Q	probably damaging	Het
Mycbp2	T	C	14: 103,389,627 (GRCm39)	I3504M	probably damaging	Het
Mycbp2	A	T	14: 103,480,564 (GRCm39)	C1169S	probably damaging	Het
Myo15a	T	C	11: 60,396,802 (GRCm39)	S1455P		Het
Niban1	A	G	1: 151,571,975 (GRCm39)	T307A	probably damaging	Het
Nid2	A	G	14: 19,818,724 (GRCm39)	D406G	probably benign	Het
Nrip2	A	G	6: 128,381,913 (GRCm39)	I69V	probably benign	Het
Nthl1	G	A	17: 24,857,598 (GRCm39)	V266I	probably benign	Het
Or2ag16	T	C	7: 106,352,589 (GRCm39)	E2G	possibly damaging	Het
Or5an6	G	T	19: 12,371,829 (GRCm39)	L67F	probably damaging	Het
Or5b21	A	G	19: 12,839,951 (GRCm39)	T271A	probably benign	Het
Or5g23	A	C	2: 85,438,832 (GRCm39)	C141G	possibly damaging	Het
Or5p75-ps1	C	A	7: 108,107,291 (GRCm39)	H9Q	possibly damaging	Het
Or8k25	A	G	2: 86,243,496 (GRCm39)	V300A	probably benign	Het
Or8s5	A	G	15: 98,238,192 (GRCm39)	V226A	probably benign	Het
Pcdhb1	A	C	18: 37,398,171 (GRCm39)	S41R	possibly damaging	Het
Pdcd11	T	A	19: 47,116,436 (GRCm39)	F1529I	probably damaging	Het
Plcd3	C	A	11: 102,992,383 (GRCm39)		probably benign	Het
Qdpr	T	C	5: 45,596,718 (GRCm39)	M149V	probably benign	Het
R3hcc1	T	A	14: 69,943,329 (GRCm39)		probably null	Het
Rasgrf2	T	C	13: 92,041,856 (GRCm39)	Y392C		Het
Slc8a3	A	C	12: 81,361,577 (GRCm39)	V414G	probably damaging	Het
Slco1a6	A	G	6: 142,103,003 (GRCm39)	S54P	probably benign	Het
Sos1	C	A	17: 80,731,629 (GRCm39)	V624F	probably damaging	Het
Spdef	T	C	17: 27,936,262 (GRCm39)	D227G	probably benign	Het
Sptb	G	T	12: 76,671,003 (GRCm39)	Q447K	probably damaging	Het
Srsf12	A	T	4: 33,209,265 (GRCm39)	R62W	unknown	Het
Stag3	T	C	5: 138,289,628 (GRCm39)	L266P	probably damaging	Het
Sult2b1	T	C	7: 45,391,862 (GRCm39)		probably benign	Het
Taf1a	A	G	1: 183,190,095 (GRCm39)	T66A		Het
Tfg	A	T	16: 56,532,972 (GRCm39)		probably null	Het
Trim34b	A	G	7: 103,985,604 (GRCm39)	N413S	probably benign	Het
Txndc15	T	A	13: 55,869,399 (GRCm39)	M184K	probably damaging	Het
Umodl1	A	C	17: 31,201,306 (GRCm39)	S412R	probably damaging	Het
Zbtb8b	T	A	4: 129,326,683 (GRCm39)	M161L	probably benign	Het
Zfp597	A	T	16: 3,684,369 (GRCm39)	V129E	probably benign	Het
Zfp790	T	C	7: 29,528,050 (GRCm39)	I245T	possibly damaging	Het

Other mutations in Lrch3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01129:Lrch3	APN	16	32,815,335 (GRCm39)	missense	probably benign	0.10
IGL01400:Lrch3	APN	16	32,799,911 (GRCm39)	missense	probably damaging	1.00
IGL02565:Lrch3	APN	16	32,826,084 (GRCm39)	missense	probably benign	0.00
IGL03076:Lrch3	APN	16	32,802,223 (GRCm39)	missense	possibly damaging	0.52
IGL03103:Lrch3	APN	16	32,772,507 (GRCm39)	missense	probably damaging	1.00
IGL03125:Lrch3	APN	16	32,734,647 (GRCm39)	missense	possibly damaging	0.83
IGL03349:Lrch3	APN	16	32,775,694 (GRCm39)	missense	probably damaging	1.00
eluted	UTSW	16	32,806,377 (GRCm39)	missense	probably null
leached	UTSW	16	32,779,833 (GRCm39)	missense	probably damaging	1.00
R0054:Lrch3	UTSW	16	32,816,222 (GRCm39)	intron	probably benign
R0123:Lrch3	UTSW	16	32,782,124 (GRCm39)	splice site	probably benign
R0225:Lrch3	UTSW	16	32,782,124 (GRCm39)	splice site	probably benign
R0326:Lrch3	UTSW	16	32,799,870 (GRCm39)	missense	probably damaging	1.00
R0455:Lrch3	UTSW	16	32,807,250 (GRCm39)	missense	probably damaging	0.99
R0734:Lrch3	UTSW	16	32,817,853 (GRCm39)	nonsense	probably null
R1204:Lrch3	UTSW	16	32,829,584 (GRCm39)	missense	probably damaging	1.00
R1470:Lrch3	UTSW	16	32,808,865 (GRCm39)	splice site	probably benign
R1526:Lrch3	UTSW	16	32,770,746 (GRCm39)	missense	probably damaging	1.00
R1597:Lrch3	UTSW	16	32,770,781 (GRCm39)	nonsense	probably null
R1850:Lrch3	UTSW	16	32,807,163 (GRCm39)	missense	probably benign	0.01
R1966:Lrch3	UTSW	16	32,734,755 (GRCm39)	missense	possibly damaging	0.94
R2241:Lrch3	UTSW	16	32,816,211 (GRCm39)	missense	probably damaging	0.99
R2313:Lrch3	UTSW	16	32,782,045 (GRCm39)	missense	probably damaging	1.00
R2902:Lrch3	UTSW	16	32,770,766 (GRCm39)	missense	probably damaging	1.00
R4723:Lrch3	UTSW	16	32,808,854 (GRCm39)	splice site	probably null
R4795:Lrch3	UTSW	16	32,826,074 (GRCm39)	missense	probably damaging	1.00
R4970:Lrch3	UTSW	16	32,818,883 (GRCm39)	missense	probably damaging	1.00
R5223:Lrch3	UTSW	16	32,734,767 (GRCm39)	missense	probably damaging	0.99
R5292:Lrch3	UTSW	16	32,796,177 (GRCm39)	missense	probably damaging	1.00
R5414:Lrch3	UTSW	16	32,806,335 (GRCm39)	splice site	probably null
R5470:Lrch3	UTSW	16	32,818,960 (GRCm39)	missense	probably damaging	1.00
R5594:Lrch3	UTSW	16	32,734,554 (GRCm39)	missense	probably damaging	0.99
R5843:Lrch3	UTSW	16	32,818,896 (GRCm39)	missense	probably damaging	1.00
R5862:Lrch3	UTSW	16	32,816,179 (GRCm39)	missense	probably damaging	1.00
R5911:Lrch3	UTSW	16	32,779,833 (GRCm39)	missense	probably damaging	1.00
R5932:Lrch3	UTSW	16	32,796,106 (GRCm39)	missense	probably damaging	1.00
R6519:Lrch3	UTSW	16	32,815,367 (GRCm39)	critical splice donor site	probably benign
R6731:Lrch3	UTSW	16	32,770,790 (GRCm39)	missense	probably damaging	1.00
R7182:Lrch3	UTSW	16	32,814,149 (GRCm39)	missense	probably benign	0.05
R7197:Lrch3	UTSW	16	32,810,665 (GRCm39)	missense	probably damaging	1.00
R7319:Lrch3	UTSW	16	32,815,363 (GRCm39)	missense	probably benign	0.19
R7408:Lrch3	UTSW	16	32,807,113 (GRCm39)	nonsense	probably null
R7414:Lrch3	UTSW	16	32,818,883 (GRCm39)	missense	probably damaging	1.00
R7425:Lrch3	UTSW	16	32,826,077 (GRCm39)	missense	probably damaging	1.00
R7909:Lrch3	UTSW	16	32,829,663 (GRCm39)	missense	probably benign	0.00
R7956:Lrch3	UTSW	16	32,806,377 (GRCm39)	missense	probably null
R8009:Lrch3	UTSW	16	32,826,083 (GRCm39)	missense	possibly damaging	0.72
R8247:Lrch3	UTSW	16	32,829,713 (GRCm39)	nonsense	probably null
R8408:Lrch3	UTSW	16	32,775,750 (GRCm39)	missense	probably damaging	1.00
R8686:Lrch3	UTSW	16	32,802,223 (GRCm39)	missense	possibly damaging	0.52
R8756:Lrch3	UTSW	16	32,808,810 (GRCm39)	missense	probably benign	0.33
R8947:Lrch3	UTSW	16	32,802,199 (GRCm39)	missense	possibly damaging	0.66
R9459:Lrch3	UTSW	16	32,799,775 (GRCm39)	missense	probably damaging	0.99
R9710:Lrch3	UTSW	16	32,796,108 (GRCm39)	nonsense	probably null
Z1176:Lrch3	UTSW	16	32,734,686 (GRCm39)	missense	possibly damaging	0.89

Predicted Primers

PCR Primer
(F):5'- CATGCAAGAACATCGTGAGG -3'
(R):5'- TCCAGACTGCTCTACAATGC -3'

Sequencing Primer
(F):5'- CATCGTGAGGGAGAAAGGTTAAC -3'
(R):5'- CTGCTCTACAATGCATAGATGGG -3'

Posted On

2019-09-13