Incidental Mutation 'R7413:Magel2'
| ID |
575216 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Magel2
|
| Ensembl Gene |
ENSMUSG00000056972 |
| Gene Name |
MAGE family member L2 |
| Synonyms |
NDNL1, nM15, ns7, Mage-l2 |
| Accession Numbers |
|
| Essential gene? |
Essential
(E-score: 1.000)
|
| Stock # |
R7413 (G1)
|
| Quality Score |
129.467 |
|
Status
|
Not validated
|
| Chromosome |
7 |
| Chromosomal Location |
62026758-62031388 bp(+) (GRCm39) |
| Type of Mutation |
small deletion (1 aa in frame mutation) |
| DNA Base Change (assembly) |
CCCTCCTCCTCCTCCTCCTCCT to CCCTCCTCCTCCTCCTCCT
at 62027592 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000079265
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000080403]
|
| AlphaFold |
Q9QZ04 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000080403
|
| SMART Domains |
Protein: ENSMUSP00000079265
Gene: ENSMUSG00000056972
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
30 |
49 |
N/A |
INTRINSIC |
|
low complexity region
|
51 |
84 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
85 |
131 |
2.45e-10 |
PROSPERO |
|
low complexity region
|
134 |
205 |
N/A |
INTRINSIC |
|
internal_repeat_1
|
222 |
298 |
2.45e-10 |
PROSPERO |
|
internal_repeat_2
|
289 |
332 |
6.32e-5 |
PROSPERO |
|
low complexity region
|
347 |
363 |
N/A |
INTRINSIC |
|
low complexity region
|
467 |
492 |
N/A |
INTRINSIC |
|
internal_repeat_2
|
494 |
535 |
6.32e-5 |
PROSPERO |
|
low complexity region
|
560 |
648 |
N/A |
INTRINSIC |
|
low complexity region
|
675 |
686 |
N/A |
INTRINSIC |
|
low complexity region
|
761 |
785 |
N/A |
INTRINSIC |
|
low complexity region
|
903 |
920 |
N/A |
INTRINSIC |
|
MAGE
|
1059 |
1229 |
6.82e-65 |
SMART |
|
low complexity region
|
1262 |
1284 |
N/A |
INTRINSIC |
|
| Coding Region Coverage |
- 1x: 100.0%
- 3x: 100.0%
- 10x: 99.7%
- 20x: 99.2%
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] Prader-Willi syndrome (PWS) is caused by the loss of expression of imprinted genes in chromosome 15q11-q13 region. Affected individuals exhibit neonatal hypotonia, developmental delay, and childhood-onset obesity. Necdin (NDN), a gene involved in the terminal differentiation of neurons, localizes to this region of the genome and has been implicated as one of the genes responsible for the etiology of PWS. This gene is structurally similar to NDN, is also localized to the PWS chromosomal region, and is paternally imprinted, suggesting a possible role for it in PWS. [provided by RefSeq, Oct 2010]
PHENOTYPE: Mice heterozygous for a null allele that is inherited paternally exhibit some postnatal lethality, reduced male fertility, abnormal circadian rhythm, and hypoactivity. Mice heterozygous for another paternal knock-out allele exhibit 50% neonatal lethalityassociated with weak suckling activity. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 62 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| A1cf |
T |
C |
19: 31,895,524 (GRCm39) |
|
probably null |
Het |
| Agbl4 |
A |
T |
4: 111,514,495 (GRCm39) |
D502V |
probably benign |
Het |
| Akap5 |
T |
A |
12: 76,375,678 (GRCm39) |
V370E |
possibly damaging |
Het |
| Alms1 |
T |
C |
6: 85,605,288 (GRCm39) |
C1844R |
probably benign |
Het |
| Apaf1 |
T |
C |
10: 90,831,542 (GRCm39) |
K1191E |
probably benign |
Het |
| Bsn |
C |
T |
9: 108,016,690 (GRCm39) |
R107Q |
possibly damaging |
Het |
| Catsperb |
G |
T |
12: 101,447,307 (GRCm39) |
R269L |
probably damaging |
Het |
| Ccer1 |
T |
C |
10: 97,529,804 (GRCm39) |
S156P |
unknown |
Het |
| Cdh16 |
C |
T |
8: 105,346,572 (GRCm39) |
A241T |
probably benign |
Het |
| Cdk5rap2 |
A |
G |
4: 70,172,972 (GRCm39) |
S1367P |
probably damaging |
Het |
| Cds2 |
C |
T |
2: 132,135,235 (GRCm39) |
P42L |
probably benign |
Het |
| Col15a1 |
T |
C |
4: 47,245,431 (GRCm39) |
Y61H |
possibly damaging |
Het |
| Dclre1a |
G |
A |
19: 56,531,082 (GRCm39) |
P755S |
probably damaging |
Het |
| Ddi1 |
A |
T |
9: 6,265,670 (GRCm39) |
M233K |
probably damaging |
Het |
| Dpp4 |
T |
C |
2: 62,187,333 (GRCm39) |
Y474C |
probably damaging |
Het |
| Epha7 |
T |
A |
4: 28,871,838 (GRCm39) |
M389K |
probably benign |
Het |
| Ephb3 |
T |
C |
16: 21,033,457 (GRCm39) |
F181S |
probably damaging |
Het |
| Epor |
G |
A |
9: 21,874,776 (GRCm39) |
|
probably benign |
Het |
| Fbp2 |
C |
A |
13: 62,985,067 (GRCm39) |
V285L |
probably benign |
Het |
| Flnc |
A |
T |
6: 29,452,258 (GRCm39) |
D1694V |
probably damaging |
Het |
| Ganab |
T |
A |
19: 8,882,339 (GRCm39) |
M98K |
probably benign |
Het |
| Gcm2 |
A |
G |
13: 41,259,230 (GRCm39) |
S80P |
probably damaging |
Het |
| Gls |
A |
G |
1: 52,254,735 (GRCm39) |
S247P |
probably benign |
Het |
| Gne |
T |
C |
4: 44,044,857 (GRCm39) |
N426D |
probably benign |
Het |
| Ifne |
A |
T |
4: 88,797,840 (GRCm39) |
*193R |
probably null |
Het |
| Igf2r |
G |
T |
17: 12,917,115 (GRCm39) |
S1595* |
probably null |
Het |
| Krt26 |
C |
T |
11: 99,225,887 (GRCm39) |
M226I |
probably benign |
Het |
| Lars2 |
G |
A |
9: 123,288,568 (GRCm39) |
V805I |
probably benign |
Het |
| Lrrc57 |
C |
A |
2: 120,436,577 (GRCm39) |
R177L |
probably damaging |
Het |
| Lrrn1 |
A |
G |
6: 107,546,083 (GRCm39) |
E627G |
probably benign |
Het |
| Mdga1 |
A |
T |
17: 30,069,647 (GRCm39) |
V133E |
probably damaging |
Het |
| Med12l |
A |
G |
3: 58,998,971 (GRCm39) |
T644A |
probably benign |
Het |
| Meis1 |
T |
A |
11: 18,938,357 (GRCm39) |
D218V |
probably damaging |
Het |
| Myo15b |
A |
G |
11: 115,768,970 (GRCm39) |
E1439G |
|
Het |
| Naa12 |
T |
C |
18: 80,254,874 (GRCm39) |
V56A |
possibly damaging |
Het |
| Nckipsd |
G |
A |
9: 108,691,280 (GRCm39) |
V401I |
probably benign |
Het |
| Nrg3 |
T |
C |
14: 38,092,669 (GRCm39) |
I655V |
probably damaging |
Het |
| Oprm1 |
A |
T |
10: 6,778,919 (GRCm39) |
I107F |
probably damaging |
Het |
| Or4k42 |
A |
C |
2: 111,319,933 (GRCm39) |
I190R |
probably benign |
Het |
| Or52n3 |
A |
T |
7: 104,530,057 (GRCm39) |
I48F |
probably benign |
Het |
| Or5p51 |
T |
C |
7: 107,444,721 (GRCm39) |
D73G |
probably damaging |
Het |
| Osbpl7 |
T |
C |
11: 96,945,704 (GRCm39) |
|
probably null |
Het |
| Pcdh18 |
T |
G |
3: 49,699,232 (GRCm39) |
S1077R |
possibly damaging |
Het |
| Pcdhb16 |
A |
T |
18: 37,611,975 (GRCm39) |
K312* |
probably null |
Het |
| Plekhh2 |
A |
T |
17: 84,873,724 (GRCm39) |
E336D |
probably benign |
Het |
| Ptprd |
A |
T |
4: 76,165,076 (GRCm39) |
S49T |
probably benign |
Het |
| Pxdn |
A |
G |
12: 30,052,927 (GRCm39) |
I1035V |
probably benign |
Het |
| Rlf |
C |
T |
4: 121,007,297 (GRCm39) |
G671D |
probably damaging |
Het |
| Rsf1 |
GGCGGCGGC |
GGCGGCGGCCGCGGCGGC |
7: 97,229,128 (GRCm39) |
|
probably benign |
Het |
| Selenbp2 |
A |
G |
3: 94,607,404 (GRCm39) |
Q275R |
probably benign |
Het |
| Slc10a1 |
G |
T |
12: 81,007,396 (GRCm39) |
F128L |
probably benign |
Het |
| Slitrk1 |
A |
T |
14: 109,149,357 (GRCm39) |
Y451* |
probably null |
Het |
| Spata31f3 |
TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG |
TCATTCAACACTTTGGAGAGCTCTGAACTCTGGCCATTCAACACTTTGGAGAGCTCTGAACTCTGGTCATTCAACACTTTGG |
4: 42,871,823 (GRCm39) |
|
probably benign |
Het |
| Stambpl1 |
G |
C |
19: 34,204,116 (GRCm39) |
G69R |
probably damaging |
Het |
| Surf4 |
G |
T |
2: 26,814,455 (GRCm39) |
R149S |
probably benign |
Het |
| Tmem151a |
T |
C |
19: 5,132,702 (GRCm39) |
Y168C |
probably damaging |
Het |
| Ttc39c |
A |
G |
18: 12,861,746 (GRCm39) |
K416R |
possibly damaging |
Het |
| Tut4 |
T |
C |
4: 108,406,533 (GRCm39) |
I1367T |
possibly damaging |
Het |
| Vit |
T |
C |
17: 78,932,309 (GRCm39) |
I472T |
probably damaging |
Het |
| Vmn1r212 |
A |
C |
13: 23,067,718 (GRCm39) |
L205R |
probably damaging |
Het |
| Wscd2 |
T |
C |
5: 113,715,402 (GRCm39) |
I414T |
probably benign |
Het |
| Zfp1005 |
A |
C |
2: 150,108,081 (GRCm39) |
T14P |
possibly damaging |
Het |
|
| Other mutations in Magel2 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00948:Magel2
|
APN |
7 |
62,029,070 (GRCm39) |
missense |
unknown |
|
|
IGL01391:Magel2
|
APN |
7 |
62,030,632 (GRCm39) |
missense |
unknown |
|
|
IGL01876:Magel2
|
APN |
7 |
62,028,575 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
IGL02613:Magel2
|
APN |
7 |
62,029,946 (GRCm39) |
missense |
unknown |
|
|
IGL02617:Magel2
|
APN |
7 |
62,029,946 (GRCm39) |
missense |
unknown |
|
|
IGL03256:Magel2
|
APN |
7 |
62,030,162 (GRCm39) |
missense |
unknown |
|
|
IGL03382:Magel2
|
APN |
7 |
62,028,461 (GRCm39) |
missense |
probably benign |
0.00 |
|
astroclast2
|
UTSW |
7 |
62,029,907 (GRCm39) |
missense |
unknown |
|
|
IGL02837:Magel2
|
UTSW |
7 |
62,028,008 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R0398:Magel2
|
UTSW |
7 |
62,030,299 (GRCm39) |
nonsense |
probably null |
|
|
R0463:Magel2
|
UTSW |
7 |
62,027,778 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R1033:Magel2
|
UTSW |
7 |
62,029,798 (GRCm39) |
missense |
unknown |
|
|
R1271:Magel2
|
UTSW |
7 |
62,030,762 (GRCm39) |
missense |
unknown |
|
|
R1518:Magel2
|
UTSW |
7 |
62,030,188 (GRCm39) |
missense |
unknown |
|
|
R1539:Magel2
|
UTSW |
7 |
62,028,557 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
R1682:Magel2
|
UTSW |
7 |
62,029,983 (GRCm39) |
missense |
unknown |
|
|
R1686:Magel2
|
UTSW |
7 |
62,027,988 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R1782:Magel2
|
UTSW |
7 |
62,030,605 (GRCm39) |
nonsense |
probably null |
|
|
R1785:Magel2
|
UTSW |
7 |
62,027,486 (GRCm39) |
missense |
unknown |
|
|
R1786:Magel2
|
UTSW |
7 |
62,027,486 (GRCm39) |
missense |
unknown |
|
|
R1950:Magel2
|
UTSW |
7 |
62,028,163 (GRCm39) |
missense |
possibly damaging |
0.48 |
|
R2001:Magel2
|
UTSW |
7 |
62,028,844 (GRCm39) |
missense |
unknown |
|
|
R2002:Magel2
|
UTSW |
7 |
62,028,844 (GRCm39) |
missense |
unknown |
|
|
R2018:Magel2
|
UTSW |
7 |
62,028,844 (GRCm39) |
missense |
unknown |
|
|
R2019:Magel2
|
UTSW |
7 |
62,028,844 (GRCm39) |
missense |
unknown |
|
|
R2029:Magel2
|
UTSW |
7 |
62,030,342 (GRCm39) |
missense |
unknown |
|
|
R2070:Magel2
|
UTSW |
7 |
62,028,844 (GRCm39) |
missense |
unknown |
|
|
R2131:Magel2
|
UTSW |
7 |
62,027,486 (GRCm39) |
missense |
unknown |
|
|
R2132:Magel2
|
UTSW |
7 |
62,027,486 (GRCm39) |
missense |
unknown |
|
|
R2133:Magel2
|
UTSW |
7 |
62,027,486 (GRCm39) |
missense |
unknown |
|
|
R2134:Magel2
|
UTSW |
7 |
62,028,844 (GRCm39) |
missense |
unknown |
|
|
R2155:Magel2
|
UTSW |
7 |
62,030,540 (GRCm39) |
missense |
unknown |
|
|
R4294:Magel2
|
UTSW |
7 |
62,028,515 (GRCm39) |
missense |
possibly damaging |
0.86 |
|
R4591:Magel2
|
UTSW |
7 |
62,030,837 (GRCm39) |
missense |
unknown |
|
|
R4621:Magel2
|
UTSW |
7 |
62,027,486 (GRCm39) |
missense |
unknown |
|
|
R4816:Magel2
|
UTSW |
7 |
62,030,840 (GRCm39) |
missense |
unknown |
|
|
R4931:Magel2
|
UTSW |
7 |
62,030,372 (GRCm39) |
missense |
unknown |
|
|
R5031:Magel2
|
UTSW |
7 |
62,029,852 (GRCm39) |
missense |
unknown |
|
|
R5034:Magel2
|
UTSW |
7 |
62,029,616 (GRCm39) |
missense |
unknown |
|
|
R5042:Magel2
|
UTSW |
7 |
62,029,354 (GRCm39) |
missense |
unknown |
|
|
R5600:Magel2
|
UTSW |
7 |
62,029,514 (GRCm39) |
missense |
unknown |
|
|
R5769:Magel2
|
UTSW |
7 |
62,027,861 (GRCm39) |
missense |
probably benign |
0.02 |
|
R5980:Magel2
|
UTSW |
7 |
62,030,344 (GRCm39) |
missense |
unknown |
|
|
R5987:Magel2
|
UTSW |
7 |
62,028,515 (GRCm39) |
missense |
probably benign |
0.33 |
|
R6187:Magel2
|
UTSW |
7 |
62,027,389 (GRCm39) |
missense |
unknown |
|
|
R6267:Magel2
|
UTSW |
7 |
62,028,427 (GRCm39) |
missense |
probably damaging |
0.98 |
|
R6270:Magel2
|
UTSW |
7 |
62,030,406 (GRCm39) |
nonsense |
probably null |
|
|
R6316:Magel2
|
UTSW |
7 |
62,028,467 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R6444:Magel2
|
UTSW |
7 |
62,029,747 (GRCm39) |
missense |
unknown |
|
|
R6452:Magel2
|
UTSW |
7 |
62,030,132 (GRCm39) |
missense |
unknown |
|
|
R6797:Magel2
|
UTSW |
7 |
62,029,907 (GRCm39) |
missense |
unknown |
|
|
R6917:Magel2
|
UTSW |
7 |
62,027,592 (GRCm39) |
small deletion |
probably benign |
|
|
R7011:Magel2
|
UTSW |
7 |
62,028,281 (GRCm39) |
missense |
possibly damaging |
0.92 |
|
R7025:Magel2
|
UTSW |
7 |
62,029,535 (GRCm39) |
missense |
unknown |
|
|
R7335:Magel2
|
UTSW |
7 |
62,030,524 (GRCm39) |
missense |
unknown |
|
|
R7353:Magel2
|
UTSW |
7 |
62,029,079 (GRCm39) |
missense |
unknown |
|
|
R7570:Magel2
|
UTSW |
7 |
62,028,658 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
R7714:Magel2
|
UTSW |
7 |
62,028,130 (GRCm39) |
missense |
probably benign |
0.08 |
|
R7836:Magel2
|
UTSW |
7 |
62,028,116 (GRCm39) |
missense |
possibly damaging |
0.73 |
|
R8289:Magel2
|
UTSW |
7 |
62,028,875 (GRCm39) |
missense |
unknown |
|
|
R8717:Magel2
|
UTSW |
7 |
62,027,420 (GRCm39) |
missense |
unknown |
|
|
R8903:Magel2
|
UTSW |
7 |
62,029,441 (GRCm39) |
missense |
unknown |
|
|
R8911:Magel2
|
UTSW |
7 |
62,029,537 (GRCm39) |
missense |
unknown |
|
|
R8971:Magel2
|
UTSW |
7 |
62,029,999 (GRCm39) |
missense |
unknown |
|
|
R9096:Magel2
|
UTSW |
7 |
62,030,297 (GRCm39) |
missense |
unknown |
|
|
R9264:Magel2
|
UTSW |
7 |
62,028,344 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
RF022:Magel2
|
UTSW |
7 |
62,029,841 (GRCm39) |
missense |
unknown |
|
|
Z1088:Magel2
|
UTSW |
7 |
62,028,725 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
Z1177:Magel2
|
UTSW |
7 |
62,029,355 (GRCm39) |
missense |
unknown |
|
|
| Predicted Primers |
PCR Primer
(F):5'- ACTCCTGGAGTCTTGATGGTCC -3'
(R):5'- TAATCGAAGGTGCAGGCTG -3'
Sequencing Primer
(F):5'- TGATGGTCCATCAGCCCC -3'
(R):5'- AACATGCGGCATTGGAGTTCC -3'
|
| Posted On |
2019-10-07 |
Incidental Mutation