Mutagenetix > Incidental Mutation

Incidental Mutation 'R7421:Prmt2'

575668

Institutional Source

Beutler Lab

Gene Symbol

Prmt2

Ensembl Gene

ENSMUSG00000020230

Gene Name

protein arginine N-methyltransferase 2

Synonyms

Hrmt1l1

MMRRC Submission

045499-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7421 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

76043060-76073699 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 76056912 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 204 (F204L)

Ref Sequence

ENSEMBL: ENSMUSP00000097167 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000020452] [ENSMUST00000099571] [ENSMUST00000099572] [ENSMUST00000128099] [ENSMUST00000137857] [ENSMUST00000217726]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000020452
AA Change: F204L

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000020452
Gene: ENSMUSG00000020230
AA Change: F204L

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
SH3	45	100	4.22e-15	SMART
Pfam:PrmA	122	253	2.5e-8	PFAM
Pfam:PRMT5	123	427	2.4e-13	PFAM
Pfam:Met_10	127	244	5.1e-8	PFAM
Pfam:MTS	134	223	5.7e-11	PFAM
Pfam:Methyltransf_31	147	294	1.5e-8	PFAM
Pfam:Methyltransf_26	150	224	1.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000099571
AA Change: F204L

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000097166
Gene: ENSMUSG00000020230
AA Change: F204L

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
SH3	45	100	4.22e-15	SMART
Pfam:PrmA	122	253	2.5e-8	PFAM
Pfam:PRMT5	123	427	2.4e-13	PFAM
Pfam:Met_10	127	244	5.1e-8	PFAM
Pfam:MTS	134	223	5.7e-11	PFAM
Pfam:Methyltransf_31	147	294	1.5e-8	PFAM
Pfam:Methyltransf_26	150	224	1.2e-9	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000099572
AA Change: F204L

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000097167
Gene: ENSMUSG00000020230
AA Change: F204L

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
SH3	45	100	4.22e-15	SMART
Pfam:PrmA	124	253	3.1e-8	PFAM
Pfam:PRMT5	124	451	1.2e-11	PFAM
Pfam:MTS	137	223	3.3e-10	PFAM
Pfam:Methyltransf_31	147	294	1.7e-8	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000128099
AA Change: F204L

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000137707
Gene: ENSMUSG00000020230
AA Change: F204L

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
SH3	45	100	4.22e-15	SMART
Pfam:PrmA	120	253	1.3e-9	PFAM
Pfam:Met_10	122	235	3.8e-8	PFAM
Pfam:TehB	122	235	6.9e-8	PFAM
Pfam:MTS	133	223	2e-11	PFAM
Pfam:Methyltransf_31	147	243	9.3e-9	PFAM
Pfam:Methyltransf_26	150	224	4.6e-10	PFAM
Pfam:Methyltransf_11	154	238	3.2e-6	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000137857
AA Change: F204L

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000137725
Gene: ENSMUSG00000020230
AA Change: F204L

Domain	Start	End	E-Value	Type
low complexity region	30	43	N/A	INTRINSIC
SH3	45	100	4.22e-15	SMART
Pfam:PrmA	120	253	1.5e-9	PFAM
Pfam:Met_10	129	235	4.2e-7	PFAM
Pfam:MTS	137	223	1.1e-10	PFAM
Pfam:Methyltransf_31	147	243	9.2e-9	PFAM
Pfam:Methyltransf_11	154	237	1.7e-6	PFAM

Predicted Effect

probably benign
Transcript: ENSMUST00000217726

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.8%
20x: 99.2%

Validation Efficiency

100% (60/60)

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele display a hyperplastic response to vascular injury while mutant mouse embryonic fibroblasts show an earlier S phase entry following release of serum starvation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 59 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Aar2	T	C	2: 156,397,915 (GRCm39)	I309T	possibly damaging	Het
Abca12	A	C	1: 71,286,295 (GRCm39)	L2513*	probably null	Het
Abca13	G	C	11: 9,460,463 (GRCm39)	V4158L	probably benign	Het
Acaca	A	G	11: 84,254,562 (GRCm39)	T1880A	possibly damaging	Het
Arhgap5	C	T	12: 52,564,783 (GRCm39)	R585C	probably benign	Het
Arsk	A	C	13: 76,210,634 (GRCm39)	I471S	possibly damaging	Het
Asb7	T	C	7: 66,309,868 (GRCm39)	D116G	probably damaging	Het
Atad2	A	G	15: 57,998,322 (GRCm39)	S17P	probably benign	Het
Atf5	T	C	7: 44,464,562 (GRCm39)	E10G	probably damaging	Het
B3gntl1	G	T	11: 121,515,004 (GRCm39)	P255T	probably benign	Het
Cacna1s	A	G	1: 136,014,540 (GRCm39)	N649S	probably damaging	Het
Ccnc	A	G	4: 21,743,291 (GRCm39)	Y192C	probably damaging	Het
Cd28	A	G	1: 60,802,459 (GRCm39)	N126S	probably benign	Het
Cep57	A	G	9: 13,721,969 (GRCm39)	S360P	possibly damaging	Het
Ces1e	C	T	8: 93,941,703 (GRCm39)	V257I	probably benign	Het
Chd1	A	G	17: 15,969,660 (GRCm39)	K913R	probably benign	Het
Cluap1	A	T	16: 3,758,657 (GRCm39)	D373V	probably damaging	Het
Cnmd	T	C	14: 79,882,947 (GRCm39)	I160V	probably benign	Het
Col6a4	G	A	9: 105,897,994 (GRCm39)	P1686S	probably damaging	Het
Coro7	G	T	16: 4,486,615 (GRCm39)	A186E	probably benign	Het
Cuta	T	C	17: 27,158,431 (GRCm39)		probably benign	Het
Dnah2	G	A	11: 69,383,631 (GRCm39)	H1098Y	probably benign	Het
Duox1	T	A	2: 122,153,711 (GRCm39)	C345S	probably damaging	Het
Ephb4	T	A	5: 137,352,687 (GRCm39)	I90K	possibly damaging	Het
Erich3	T	A	3: 154,439,198 (GRCm39)	M280K	probably damaging	Het
Fcer2a	T	A	8: 3,740,335 (GRCm39)	H4L	probably benign	Het
Grk1	A	T	8: 13,455,316 (GRCm39)	I67F	probably damaging	Het
Grm8	A	C	6: 27,762,476 (GRCm39)	S250A	possibly damaging	Het
H2-Q6	A	G	17: 35,644,204 (GRCm39)	E62G	possibly damaging	Het
Inppl1	C	T	7: 101,482,144 (GRCm39)	R144H	probably damaging	Het
Itga3	G	T	11: 94,959,681 (GRCm39)	P33Q	probably benign	Het
Itgax	G	A	7: 127,739,604 (GRCm39)	S672N	probably damaging	Het
Itpk1	A	T	12: 102,540,324 (GRCm39)	V253E	possibly damaging	Het
Krt15	A	T	11: 100,026,386 (GRCm39)	V100E	possibly damaging	Het
Mrps7	T	C	11: 115,495,717 (GRCm39)	V85A	probably benign	Het
Muc2	T	C	7: 141,301,863 (GRCm39)	L427P		Het
Myef2	G	T	2: 124,952,537 (GRCm39)	Q185K	probably benign	Het
Or1e1b-ps1	G	T	11: 73,846,335 (GRCm39)	C273F	unknown	Het
Or4a76	T	A	2: 89,460,915 (GRCm39)	D109V	probably damaging	Het
Pcdh15	G	A	10: 74,289,897 (GRCm39)	M905I	possibly damaging	Het
Pgm5	C	T	19: 24,686,663 (GRCm39)	V515M	probably benign	Het
Pik3r1	A	G	13: 101,825,644 (GRCm39)	I381T	probably damaging	Het
Pla2g4f	A	G	2: 120,137,737 (GRCm39)	M341T	probably benign	Het
Pwwp3a	T	A	10: 80,068,587 (GRCm39)	S244T	probably benign	Het
Rasa2	A	G	9: 96,493,500 (GRCm39)	V50A	unknown	Het
Scn7a	A	C	2: 66,505,876 (GRCm39)	I1671S	probably benign	Het
Sco2	G	A	15: 89,255,923 (GRCm39)	R244C	possibly damaging	Het
Skic3	A	T	13: 76,296,944 (GRCm39)	K1100N	probably benign	Het
Slfn1	A	G	11: 83,011,967 (GRCm39)	M28V	possibly damaging	Het
Slfn9	A	T	11: 82,872,197 (GRCm39)	C846*	probably null	Het
Slfn9	A	G	11: 82,878,562 (GRCm39)	I189T	probably damaging	Het
Svil	T	A	18: 5,056,109 (GRCm39)	S327R	probably benign	Het
Tcaf3	A	T	6: 42,573,776 (GRCm39)	N145K	probably benign	Het
Trarg1	G	A	11: 76,585,051 (GRCm39)	R147Q	unknown	Het
Trgv6	G	T	13: 19,374,814 (GRCm39)	G40W	possibly damaging	Het
Upp2	G	T	2: 58,661,586 (GRCm39)	V130F	possibly damaging	Het
Vnn3	G	A	10: 23,741,666 (GRCm39)	A324T	probably benign	Het
Wasf2	A	G	4: 132,912,412 (GRCm39)	E88G	unknown	Het
Zfp39	A	T	11: 58,780,933 (GRCm39)	C610S	probably damaging	Het

Other mutations in Prmt2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01642:Prmt2	APN	10	76,058,327 (GRCm39)	missense	probably damaging	1.00
IGL01663:Prmt2	APN	10	76,053,143 (GRCm39)	splice site	probably null
IGL02015:Prmt2	APN	10	76,062,089 (GRCm39)	nonsense	probably null
IGL03094:Prmt2	APN	10	76,046,224 (GRCm39)	splice site	probably benign
R0352:Prmt2	UTSW	10	76,044,337 (GRCm39)	missense	possibly damaging	0.89
R0617:Prmt2	UTSW	10	76,044,517 (GRCm39)	intron	probably benign
R0831:Prmt2	UTSW	10	76,043,641 (GRCm39)	unclassified	probably benign
R0885:Prmt2	UTSW	10	76,058,399 (GRCm39)	missense	probably damaging	1.00
R1882:Prmt2	UTSW	10	76,058,302 (GRCm39)	missense	probably benign	0.00
R2022:Prmt2	UTSW	10	76,061,292 (GRCm39)	nonsense	probably null
R2312:Prmt2	UTSW	10	76,062,089 (GRCm39)	nonsense	probably null
R2401:Prmt2	UTSW	10	76,061,249 (GRCm39)	nonsense	probably null
R2408:Prmt2	UTSW	10	76,044,301 (GRCm39)	missense	probably damaging	0.98
R3753:Prmt2	UTSW	10	76,061,137 (GRCm39)	missense	probably benign	0.01
R4707:Prmt2	UTSW	10	76,062,055 (GRCm39)	missense	probably damaging	0.96
R4785:Prmt2	UTSW	10	76,062,055 (GRCm39)	missense	probably damaging	0.96
R4937:Prmt2	UTSW	10	76,056,842 (GRCm39)	missense	probably damaging	1.00
R5072:Prmt2	UTSW	10	76,058,390 (GRCm39)	missense	probably damaging	1.00
R5073:Prmt2	UTSW	10	76,058,390 (GRCm39)	missense	probably damaging	1.00
R5074:Prmt2	UTSW	10	76,058,390 (GRCm39)	missense	probably damaging	1.00
R5851:Prmt2	UTSW	10	76,072,574 (GRCm39)	missense	possibly damaging	0.61
R6084:Prmt2	UTSW	10	76,046,278 (GRCm39)	missense	probably benign	0.23
R6120:Prmt2	UTSW	10	76,045,280 (GRCm39)	missense	possibly damaging	0.51
R6239:Prmt2	UTSW	10	76,058,425 (GRCm39)	nonsense	probably null
R6317:Prmt2	UTSW	10	76,058,351 (GRCm39)	missense	probably benign	0.15
R6659:Prmt2	UTSW	10	76,053,208 (GRCm39)	missense	possibly damaging	0.85
R7174:Prmt2	UTSW	10	76,061,173 (GRCm39)	missense	probably benign	0.00
R7485:Prmt2	UTSW	10	76,056,838 (GRCm39)	nonsense	probably null
R8326:Prmt2	UTSW	10	76,053,247 (GRCm39)	missense	probably benign	0.00
R9490:Prmt2	UTSW	10	76,053,227 (GRCm39)	missense	probably damaging	0.98
R9620:Prmt2	UTSW	10	76,061,213 (GRCm39)	missense	probably damaging	1.00
R9694:Prmt2	UTSW	10	76,061,213 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- AAGATTCCTCAGATGGGCCC -3'
(R):5'- TTTGAGAACAGAGGTCACATGC -3'

Sequencing Primer
(F):5'- CCCAGGGTGCTAGGTTCAGAAG -3'
(R):5'- CAGAGGTCACATGCCTCTC -3'

Posted On

2019-10-07