Mutagenetix > Incidental Mutation

Incidental Mutation 'R7457:Cdyl2'

578205

Institutional Source

Beutler Lab

Gene Symbol

Cdyl2

Ensembl Gene

ENSMUSG00000031758

Gene Name

chromodomain protein, Y chromosome-like 2

Synonyms

1700029M19Rik, 4930453I21Rik

MMRRC Submission

045531-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.127) question?

Stock #

R7457 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

117301139-117459730 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 117305935 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Glutamic Acid at position 442 (V442E)

Ref Sequence

ENSEMBL: ENSMUSP00000104730 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000109102]

AlphaFold

Q9D5D8

Predicted Effect

probably damaging
Transcript: ENSMUST00000109102
AA Change: V442E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000104730
Gene: ENSMUSG00000031758
AA Change: V442E

Domain	Start	End	E-Value	Type
CHROMO	6	60	1.25e-17	SMART
Pfam:ECH_1	252	499	5e-33	PFAM
Pfam:ECH_2	258	501	1.6e-14	PFAM

Meta Mutation Damage Score

0.6467

Coding Region Coverage

1x: 100.0%
3x: 100.0%
10x: 99.7%
20x: 99.0%

Validation Efficiency

100% (61/61)

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam32	A	T	8: 25,374,635 (GRCm39)	H452Q	probably damaging	Het
Adcy8	A	T	15: 64,792,529 (GRCm39)	N142K	possibly damaging	Het
Alkbh8	T	A	9: 3,343,056 (GRCm39)	S57R	probably damaging	Het
Atp4a	A	G	7: 30,420,192 (GRCm39)	T780A	probably benign	Het
Atp9b	A	T	18: 80,960,833 (GRCm39)		probably null	Het
Ces2a	C	T	8: 105,464,021 (GRCm39)	R218C	possibly damaging	Het
Cfap57	A	T	4: 118,446,198 (GRCm39)	V688E	probably damaging	Het
Clec11a	T	C	7: 43,955,379 (GRCm39)	T139A	probably benign	Het
Clstn1	A	T	4: 149,719,373 (GRCm39)	T411S	probably benign	Het
Commd5	A	T	15: 76,784,824 (GRCm39)	S74C	probably damaging	Het
Cyp3a59	C	A	5: 146,041,560 (GRCm39)	P368Q	probably damaging	Het
Dennd4b	A	G	3: 90,176,622 (GRCm39)	M309V	probably benign	Het
Dhrs9	T	A	2: 69,231,611 (GRCm39)	V257E	probably benign	Het
Dhx16	T	C	17: 36,201,952 (GRCm39)	V993A	probably damaging	Het
Dok5	A	T	2: 170,712,735 (GRCm39)	Q247L	probably benign	Het
E330034G19Rik	A	T	14: 24,359,582 (GRCm39)	E331V	unknown	Het
Efs	A	G	14: 55,157,451 (GRCm39)	S287P	probably benign	Het
Fbn1	T	C	2: 125,193,667 (GRCm39)	N1384S	possibly damaging	Het
Flt4	A	G	11: 49,521,155 (GRCm39)	E388G	possibly damaging	Het
Fmn2	T	A	1: 174,331,303 (GRCm39)		probably null	Het
Fmo4	T	C	1: 162,621,672 (GRCm39)	Y513C	probably benign	Het
Gbp4	T	C	5: 105,267,419 (GRCm39)	E500G	probably damaging	Het
Gm29106	T	C	1: 118,126,982 (GRCm39)	S225P	probably damaging	Het
Gstt2	G	A	10: 75,668,354 (GRCm39)	R134W	probably damaging	Het
Gucy1b2	T	C	14: 62,630,401 (GRCm39)	T782A	probably benign	Het
Gzf1	G	T	2: 148,532,002 (GRCm39)	R543L	probably damaging	Het
H2-Eb2	G	A	17: 34,553,321 (GRCm39)	G169E	probably damaging	Het
Hdhd3	T	A	4: 62,418,027 (GRCm39)	R50W	probably damaging	Het
Hdlbp	T	C	1: 93,355,944 (GRCm39)	K407E	probably benign	Het
Isl2	A	G	9: 55,452,240 (GRCm39)	T271A	probably benign	Het
Kbtbd7	GTCTCTC	GTC	14: 79,665,364 (GRCm39)		probably null	Het
Kdm4b	T	A	17: 56,703,319 (GRCm39)	N671K	probably damaging	Het
Lats1	T	A	10: 7,586,655 (GRCm39)	L939H	probably damaging	Het
Map3k1	A	T	13: 111,892,789 (GRCm39)	M822K	probably damaging	Het
Mettl18	C	A	1: 163,824,330 (GRCm39)	T217N	probably damaging	Het
Nav3	A	T	10: 109,532,189 (GRCm39)	Y2083*	probably null	Het
Nckap1l	T	C	15: 103,362,233 (GRCm39)		probably benign	Het
Nkx2-3	A	G	19: 43,600,986 (GRCm39)	D16G	probably damaging	Het
Nlrx1	A	G	9: 44,167,807 (GRCm39)	S697P	probably benign	Het
Or14j4	T	C	17: 37,921,456 (GRCm39)	K62R	possibly damaging	Het
Or1e29	G	C	11: 73,667,652 (GRCm39)	S167C	probably benign	Het
Or4k6	A	T	14: 50,475,825 (GRCm39)	N172K	probably damaging	Het
Or6c75	T	C	10: 129,337,575 (GRCm39)	V266A	probably damaging	Het
Pappa	A	T	4: 65,107,503 (GRCm39)	D638V	probably damaging	Het
Pot1a	T	C	6: 25,771,621 (GRCm39)	D200G	probably benign	Het
Ptprs	G	T	17: 56,726,502 (GRCm39)	T1366K	probably damaging	Het
Sass6	A	T	3: 116,413,813 (GRCm39)	R505S	probably benign	Het
Slc30a6	T	C	17: 74,714,233 (GRCm39)	I84T	probably benign	Het
Sox10	A	T	15: 79,040,339 (GRCm39)	F400L	probably benign	Het
Spata31d1b	A	T	13: 59,864,723 (GRCm39)	I624F	probably damaging	Het
Stpg4	A	G	17: 87,735,006 (GRCm39)		probably null	Het
Tbc1d9	G	T	8: 83,963,309 (GRCm39)	K340N	probably damaging	Het
Tspan12	T	A	6: 21,772,682 (GRCm39)	H289L	probably benign	Het
Ubr1	T	A	2: 120,748,309 (GRCm39)	T809S	probably benign	Het
Vmn1r43	C	T	6: 89,847,172 (GRCm39)	V105M	probably damaging	Het
Vmn1r49	A	G	6: 90,049,534 (GRCm39)	V156A	probably benign	Het
Wnt5a	A	G	14: 28,240,236 (GRCm39)		probably null	Het
Wwp2	T	A	8: 108,244,592 (GRCm39)	S255T	probably benign	Het
Zbtb10	A	G	3: 9,316,538 (GRCm39)	T117A	possibly damaging	Het
Zfp800	C	T	6: 28,244,228 (GRCm39)	V246I	probably benign	Het
Zfp955a	G	T	17: 33,463,025 (GRCm39)	Y35*	probably null	Het

Other mutations in Cdyl2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00953:Cdyl2	APN	8	117,321,928 (GRCm39)	splice site	probably benign
IGL01670:Cdyl2	APN	8	117,351,092 (GRCm39)	missense	probably damaging	1.00
IGL01964:Cdyl2	APN	8	117,350,768 (GRCm39)	missense	probably benign	0.00
IGL02148:Cdyl2	APN	8	117,315,983 (GRCm39)	splice site	probably benign
IGL02186:Cdyl2	APN	8	117,306,025 (GRCm39)	missense	possibly damaging	0.78
Allein	UTSW	8	117,305,935 (GRCm39)	missense	probably damaging	1.00
R0449:Cdyl2	UTSW	8	117,309,931 (GRCm39)	missense	probably damaging	1.00
R0630:Cdyl2	UTSW	8	117,350,774 (GRCm39)	missense	probably benign	0.03
R1430:Cdyl2	UTSW	8	117,306,056 (GRCm39)	splice site	probably benign
R1883:Cdyl2	UTSW	8	117,321,902 (GRCm39)	missense	probably damaging	1.00
R2326:Cdyl2	UTSW	8	117,350,537 (GRCm39)	missense	probably benign
R4194:Cdyl2	UTSW	8	117,305,903 (GRCm39)	splice site	probably null
R4916:Cdyl2	UTSW	8	117,305,926 (GRCm39)	missense	probably damaging	1.00
R4977:Cdyl2	UTSW	8	117,302,008 (GRCm39)	missense	probably damaging	0.99
R5092:Cdyl2	UTSW	8	117,350,679 (GRCm39)	missense	possibly damaging	0.50
R5320:Cdyl2	UTSW	8	117,321,794 (GRCm39)	nonsense	probably null
R5727:Cdyl2	UTSW	8	117,309,907 (GRCm39)	missense	probably damaging	1.00
R5830:Cdyl2	UTSW	8	117,321,823 (GRCm39)	missense	probably benign	0.23
R6077:Cdyl2	UTSW	8	117,316,129 (GRCm39)	missense	probably damaging	1.00
R6086:Cdyl2	UTSW	8	117,316,035 (GRCm39)	missense	probably damaging	1.00
R6145:Cdyl2	UTSW	8	117,321,717 (GRCm39)	missense	probably damaging	1.00
R6380:Cdyl2	UTSW	8	117,309,923 (GRCm39)	missense	probably damaging	1.00
R7152:Cdyl2	UTSW	8	117,351,066 (GRCm39)	missense	probably damaging	1.00
R7193:Cdyl2	UTSW	8	117,350,733 (GRCm39)	missense	probably benign	0.09
R7244:Cdyl2	UTSW	8	117,301,999 (GRCm39)	nonsense	probably null
R7394:Cdyl2	UTSW	8	117,350,790 (GRCm39)	missense	not run
R8770:Cdyl2	UTSW	8	117,321,822 (GRCm39)	missense	probably damaging	1.00
R9574:Cdyl2	UTSW	8	117,350,669 (GRCm39)	missense	probably benign	0.00

Predicted Primers

PCR Primer
(F):5'- TTGGCCTCAGAATTTTATTTGCACG -3'
(R):5'- GACATTGGAGGAGCTCTGTG -3'

Sequencing Primer
(F):5'- CACGTGTATGTGCGCATGC -3'
(R):5'- AGGAGCTCTGTGCCCTCAG -3'

Posted On

2019-10-07