Mutagenetix > Incidental Mutation

Incidental Mutation 'R7471:Scg3'

579205

Institutional Source

Beutler Lab

Gene Symbol

Scg3

Ensembl Gene

ENSMUSG00000032181

Gene Name

secretogranin III

Synonyms

SgIII, 1B1075, Chgd

MMRRC Submission

045545-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R7471 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

75550471-75591338 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 75589374 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Glycine at position 93 (E93G)

Ref Sequence

ENSEMBL: ENSMUSP00000034699 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034699] [ENSMUST00000213324] [ENSMUST00000214244]

AlphaFold

P47867

Predicted Effect

probably damaging
Transcript: ENSMUST00000034699
AA Change: E93G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000034699
Gene: ENSMUSG00000032181
AA Change: E93G

Domain	Start	End	E-Value	Type
Pfam:SGIII	20	471	1.3e-215	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000213324
AA Change: E93G

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

possibly damaging
Transcript: ENSMUST00000214244
AA Change: E60G

PolyPhen 2 Score 0.491 (Sensitivity: 0.88; Specificity: 0.90)

Predicted Effect

probably benign
Transcript: ENSMUST00000215603

Meta Mutation Damage Score

0.0672

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.7%

Validation Efficiency

100% (73/73)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is a member of the chromogranin/secretogranin family of neuroendocrine secretory proteins. Granins may serve as precursors for biologically active peptides. Some granins have been shown to function as helper proteins in sorting and proteolytic processing of prohormones; however, the function of this protein is unknown. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Sep 2009]
PHENOTYPE: Homozygous knockout causes dysregulation of the secretion of active peptide hormones from endocrine cells, exacerbating the adverse effects of inadequate diet (obesity, diabetes) and stress conditions. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 72 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Acaca	T	A	11: 84,168,608 (GRCm39)		probably null	Het
Ace	T	C	11: 105,864,308 (GRCm39)	V483A	probably damaging	Het
Akap13	G	A	7: 75,380,213 (GRCm39)	R462H	probably damaging	Het
Angptl2	A	T	2: 33,133,751 (GRCm39)	T358S	possibly damaging	Het
Apoh	C	T	11: 108,298,131 (GRCm39)	P144S	probably damaging	Het
Arid1a	A	G	4: 133,408,355 (GRCm39)	W1666R	unknown	Het
Asap3	A	G	4: 135,960,957 (GRCm39)	H223R	possibly damaging	Het
Bcl2l12	A	G	7: 44,645,977 (GRCm39)	S81P	possibly damaging	Het
Brd10	A	C	19: 29,707,139 (GRCm39)		probably null	Het
C8a	A	G	4: 104,674,822 (GRCm39)	S550P	probably benign	Het
Cacna2d1	C	G	5: 16,139,973 (GRCm39)		probably benign	Het
Ccdc170	A	G	10: 4,470,803 (GRCm39)	T216A	probably benign	Het
Chd7	A	T	4: 8,859,197 (GRCm39)	K2429I	probably damaging	Het
Chd8	T	C	14: 52,441,569 (GRCm39)	N2181S	probably benign	Het
Cimap1c	C	T	9: 56,759,783 (GRCm39)		probably null	Het
Clip3	T	C	7: 30,001,377 (GRCm39)	V342A	possibly damaging	Het
Cst5	C	T	2: 149,247,496 (GRCm39)	L71F	probably benign	Het
Cyp20a1	T	C	1: 60,393,799 (GRCm39)	F139S	probably damaging	Het
Dclre1b	T	A	3: 103,710,430 (GRCm39)	R494W	probably benign	Het
Dicer1	A	G	12: 104,660,969 (GRCm39)	I1695T	probably damaging	Het
Dnah7a	A	G	1: 53,458,858 (GRCm39)	L3760P	probably damaging	Het
Dock1	A	G	7: 134,765,072 (GRCm39)	D1688G	possibly damaging	Het
Drosha	G	A	15: 12,889,742 (GRCm39)	R870Q	probably damaging	Het
Dsg2	G	T	18: 20,713,675 (GRCm39)	M215I	probably benign	Het
Dst	A	T	1: 34,233,651 (GRCm39)	D3453V	possibly damaging	Het
Epha10	A	T	4: 124,796,365 (GRCm39)	Y358F		Het
Ermp1	A	T	19: 29,590,054 (GRCm39)	M853K	probably benign	Het
Hace1	T	G	10: 45,577,075 (GRCm39)	I823S	probably benign	Het
Hectd3	A	T	4: 116,853,785 (GRCm39)	Y227F	probably benign	Het
Hells	A	G	19: 38,945,501 (GRCm39)	N580S	probably benign	Het
Igkv12-44	A	G	6: 69,791,718 (GRCm39)	F82L	probably damaging	Het
Inpp5d	A	G	1: 87,623,122 (GRCm39)	D405G	probably damaging	Het
Itsn2	G	A	12: 4,758,198 (GRCm39)	R1508H	probably benign	Het
Limk1	A	T	5: 134,686,825 (GRCm39)		probably null	Het
Lingo1	T	A	9: 56,528,167 (GRCm39)	K147*	probably null	Het
Ltn1	T	C	16: 87,194,787 (GRCm39)	S1371G	probably benign	Het
Mab21l1	A	G	3: 55,691,307 (GRCm39)	D298G	possibly damaging	Het
Macf1	A	T	4: 123,366,082 (GRCm39)	V2893E	probably benign	Het
Mapk8ip1	T	C	2: 92,219,489 (GRCm39)	D114G	probably benign	Het
Med15	A	T	16: 17,540,729 (GRCm39)	W6R	probably benign	Het
Mrps34	T	C	17: 25,114,431 (GRCm39)	L97P	probably damaging	Het
Myrfl	A	T	10: 116,697,417 (GRCm39)	F36I	possibly damaging	Het
Nifk	G	A	1: 118,260,204 (GRCm39)	S253N	probably damaging	Het
Nmnat1	T	A	4: 149,557,758 (GRCm39)	T95S	probably damaging	Het
Oasl1	T	A	5: 115,073,985 (GRCm39)	I298N	probably damaging	Het
Or51a8	A	G	7: 102,549,760 (GRCm39)	Y62C	probably benign	Het
Or56b35	T	G	7: 104,963,712 (GRCm39)	L167R	probably damaging	Het
Or8g37	A	T	9: 39,731,423 (GRCm39)	M163L	probably benign	Het
Polr2b	C	T	5: 77,468,913 (GRCm39)	R230*	probably null	Het
Prkra	T	A	2: 76,477,545 (GRCm39)	E53D	probably benign	Het
Rasgrp4	T	A	7: 28,845,405 (GRCm39)	L376Q	probably damaging	Het
Rwdd3	A	G	3: 120,964,961 (GRCm39)	S65P	probably benign	Het
Satb1	G	A	17: 52,090,029 (GRCm39)	P273S	probably damaging	Het
Sf3a1	T	C	11: 4,117,724 (GRCm39)	F162S	possibly damaging	Het
Sorcs1	A	G	19: 50,250,701 (GRCm39)	Y377H	probably damaging	Het
Sptbn4	G	A	7: 27,108,439 (GRCm39)	A661V	possibly damaging	Het
Stk36	A	G	1: 74,673,479 (GRCm39)	N996S	unknown	Het
Tbca	A	T	13: 94,968,923 (GRCm39)	I37F	probably damaging	Het
Tc2n	A	T	12: 101,672,716 (GRCm39)	V75E	probably damaging	Het
Tdrkh	A	T	3: 94,333,263 (GRCm39)	S243C	probably damaging	Het
Tjp1	T	C	7: 64,964,438 (GRCm39)	D911G	probably damaging	Het
Tmbim6	A	G	15: 99,299,324 (GRCm39)		probably benign	Het
Tob1	T	A	11: 94,104,708 (GRCm39)	D81E	probably benign	Het
Ttpal	T	A	2: 163,448,945 (GRCm39)		probably null	Het
Usp37	A	T	1: 74,534,787 (GRCm39)		probably null	Het
Vmn1r235	A	G	17: 21,482,658 (GRCm39)	I328V	probably benign	Het
Vmn1r28	T	A	6: 58,242,850 (GRCm39)	L231*	probably null	Het
Xirp1	G	A	9: 119,848,176 (GRCm39)	Q236*	probably null	Het
Zc3h7b	A	G	15: 81,664,682 (GRCm39)	T514A	probably damaging	Het
Zfp524	A	G	7: 5,021,200 (GRCm39)	I243V	probably benign	Het
Zfp655	T	A	5: 145,181,542 (GRCm39)	Y467N	possibly damaging	Het
Zfp985	A	T	4: 147,667,388 (GRCm39)	K85N	possibly damaging	Het

Other mutations in Scg3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00427:Scg3	APN	9	75,570,519 (GRCm39)	missense	probably damaging	1.00
IGL02221:Scg3	APN	9	75,590,939 (GRCm39)	missense	probably damaging	0.99
IGL03391:Scg3	APN	9	75,568,533 (GRCm39)	critical splice donor site	probably null
R0137:Scg3	UTSW	9	75,570,462 (GRCm39)	unclassified	probably benign
R0366:Scg3	UTSW	9	75,582,620 (GRCm39)	splice site	probably benign
R0650:Scg3	UTSW	9	75,576,617 (GRCm39)	missense	probably damaging	1.00
R0654:Scg3	UTSW	9	75,573,017 (GRCm39)	missense	probably damaging	1.00
R0666:Scg3	UTSW	9	75,551,222 (GRCm39)	nonsense	probably null
R0827:Scg3	UTSW	9	75,590,979 (GRCm39)	missense	possibly damaging	0.81
R1317:Scg3	UTSW	9	75,576,622 (GRCm39)	missense	probably damaging	1.00
R1553:Scg3	UTSW	9	75,576,586 (GRCm39)	missense	probably null	1.00
R1751:Scg3	UTSW	9	75,576,622 (GRCm39)	missense	probably damaging	1.00
R1761:Scg3	UTSW	9	75,584,040 (GRCm39)	missense	probably damaging	1.00
R1850:Scg3	UTSW	9	75,589,449 (GRCm39)	missense	possibly damaging	0.56
R2059:Scg3	UTSW	9	75,572,998 (GRCm39)	missense	probably damaging	1.00
R2137:Scg3	UTSW	9	75,584,092 (GRCm39)	missense	probably damaging	0.96
R2384:Scg3	UTSW	9	75,573,008 (GRCm39)	missense	probably damaging	1.00
R3870:Scg3	UTSW	9	75,582,781 (GRCm39)	splice site	probably benign
R4260:Scg3	UTSW	9	75,558,979 (GRCm39)	missense	probably damaging	1.00
R5371:Scg3	UTSW	9	75,568,583 (GRCm39)	missense	probably damaging	1.00
R5417:Scg3	UTSW	9	75,576,538 (GRCm39)	missense	probably benign	0.02
R6013:Scg3	UTSW	9	75,584,090 (GRCm39)	missense	probably damaging	1.00
R7052:Scg3	UTSW	9	75,568,664 (GRCm39)	nonsense	probably null
R7202:Scg3	UTSW	9	75,590,992 (GRCm39)	missense	probably benign	0.06
R7211:Scg3	UTSW	9	75,589,366 (GRCm39)	missense	probably benign	0.00
R7490:Scg3	UTSW	9	75,576,559 (GRCm39)	missense	possibly damaging	0.94
R7651:Scg3	UTSW	9	75,589,332 (GRCm39)	missense	probably benign	0.03
R7904:Scg3	UTSW	9	75,551,149 (GRCm39)	missense	probably damaging	1.00
R9045:Scg3	UTSW	9	75,570,522 (GRCm39)	missense	probably damaging	1.00
R9228:Scg3	UTSW	9	75,558,955 (GRCm39)	missense	probably damaging	1.00
R9785:Scg3	UTSW	9	75,589,322 (GRCm39)	missense	probably damaging	1.00
Z1176:Scg3	UTSW	9	75,576,598 (GRCm39)	missense	possibly damaging	0.67

Predicted Primers

PCR Primer
(F):5'- GACCTCAACTTTGGACTTGATG -3'
(R):5'- AGAAACCACTCTGCTGTTCAG -3'

Sequencing Primer
(F):5'- CATTTTGAAAGTGTGTGACCTTTTC -3'
(R):5'- CCACTCTGCTGTTCAGTTAAATATG -3'

Posted On

2019-10-07