Mutagenetix > Incidental Mutation

Incidental Mutation 'R7490:Pan2'

580691

Institutional Source

Beutler Lab

Gene Symbol

Pan2

Ensembl Gene

ENSMUSG00000005682

Gene Name

PAN2 poly(A) specific ribonuclease subunit

Synonyms

Usp52, 1200014O24Rik

MMRRC Submission

045564-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R7490 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

128139204-128157227 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 128144309 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 186 (V186A)

Ref Sequence

ENSEMBL: ENSMUSP00000005825 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000005825] [ENSMUST00000218315] [ENSMUST00000219721]

AlphaFold

Q8BGF7

Predicted Effect

probably benign
Transcript: ENSMUST00000005825
AA Change: V186A

PolyPhen 2 Score 0.004 (Sensitivity: 0.98; Specificity: 0.59)

SMART Domains

Protein: ENSMUSP00000005825
Gene: ENSMUSG00000005682
AA Change: V186A

Domain	Start	End	E-Value	Type
low complexity region	67	79	N/A	INTRINSIC
SCOP:d1tbga_	151	357	4e-11	SMART
Blast:WD40	225	271	4e-11	BLAST
low complexity region	412	425	N/A	INTRINSIC
Pfam:UCH	515	920	2.6e-15	PFAM
Pfam:UCH_1	516	897	9.7e-70	PFAM
low complexity region	938	949	N/A	INTRINSIC
EXOIII	972	1155	1.68e-20	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000218315
AA Change: V186A

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

Predicted Effect

probably benign
Transcript: ENSMUST00000219721
AA Change: V168A

PolyPhen 2 Score 0.024 (Sensitivity: 0.95; Specificity: 0.81)

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.6%
20x: 98.8%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a deadenylase that functions as the catalytic subunit of the polyadenylate binding protein dependent poly(A) nuclease complex. The encoded protein is a magnesium dependent 3' to 5' exoribonuclease that is involved in the degradation of cytoplasmic mRNAs. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Oct 2009]
PHENOTYPE: Mice homozygous for an ENU-induced allele exhibit embryonic lethality. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 77 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1700019A02Rik	T	C	1: 53,202,389 (GRCm39)	D132G	possibly damaging	Het
Abca5	T	C	11: 110,168,437 (GRCm39)	E1424G	possibly damaging	Het
Adamts4	C	T	1: 171,084,169 (GRCm39)	Q549*	probably null	Het
Adcy4	A	G	14: 56,007,890 (GRCm39)	I893T	possibly damaging	Het
Ago1	A	T	4: 126,333,298 (GRCm39)	*858R	probably null	Het
Ank2	T	A	3: 126,752,538 (GRCm39)	I393L	probably damaging	Het
Ankrd44	T	C	1: 54,687,459 (GRCm39)	T987A	probably benign	Het
Ap2a1	G	T	7: 44,552,213 (GRCm39)	N790K	probably benign	Het
Aqr	A	G	2: 113,989,349 (GRCm39)		probably null	Het
Arel1	G	T	12: 84,988,685 (GRCm39)	F21L	probably damaging	Het
Atp1a3	T	C	7: 24,686,895 (GRCm39)	D743G	probably damaging	Het
Atp9a	A	T	2: 168,517,272 (GRCm39)	F354I	probably benign	Het
Bag6	A	G	17: 35,359,818 (GRCm39)	H259R	unknown	Het
BC028528	CTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTT	CTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTTCTGTGGTCACTGGTT	3: 95,795,448 (GRCm39)		probably benign	Het
BC028528	TGGTT	TGGTTCTGTGGTCACGGGTT	3: 95,795,498 (GRCm39)		probably benign	Het
BC028528	GTCACTGGTTCTGTG	GTCACTGGTTCTGTGTTCACTGGTTCTGTG	3: 95,795,478 (GRCm39)		probably benign	Het
Bckdk	T	A	7: 127,504,145 (GRCm39)	S15T	unknown	Het
C4b	G	T	17: 34,950,054 (GRCm39)	Y1405*	probably null	Het
Camk4	G	A	18: 33,072,598 (GRCm39)		probably null	Het
Car11	T	A	7: 45,349,742 (GRCm39)	W16R	probably benign	Het
Ccdc80	A	C	16: 44,916,763 (GRCm39)	E506D	probably damaging	Het
Chmp6	C	T	11: 119,806,269 (GRCm39)	Q32*	probably null	Het
Colq	G	A	14: 31,267,043 (GRCm39)	P166S	possibly damaging	Het
Ctxn3	T	C	18: 57,610,357 (GRCm39)	M58T	probably damaging	Het
Cxcl3	A	T	5: 90,934,516 (GRCm39)	I93L	unknown	Het
Dnaaf2	T	C	12: 69,244,380 (GRCm39)	Y227C	probably damaging	Het
Dner	CGCTGCTGCTGCTGCTGCTGCTGCTGC	CGCTGCTGCTGCTGCTGCTGCTGC	1: 84,563,270 (GRCm39)		probably benign	Het
Dnmt3a	G	A	12: 3,954,204 (GRCm39)	G792D	probably damaging	Het
Dsg4	T	A	18: 20,584,993 (GRCm39)		probably null	Het
Ecm2	C	T	13: 49,683,818 (GRCm39)	Q599*	probably null	Het
Fbxl13	T	A	5: 21,728,058 (GRCm39)	R550*	probably null	Het
Gm4302	A	T	10: 100,177,445 (GRCm39)	Q243L	unknown	Het
Gm7168	A	T	17: 14,169,275 (GRCm39)	Y214F	probably benign	Het
Gtf3c1	C	T	7: 125,246,663 (GRCm39)	D1549N	probably damaging	Het
Gtf3c5	A	T	2: 28,461,153 (GRCm39)	D320E	probably damaging	Het
Hivep1	T	A	13: 42,311,126 (GRCm39)	V1122D	probably damaging	Het
Ibtk	T	C	9: 85,600,987 (GRCm39)		probably null	Het
Irs1	T	A	1: 82,264,985 (GRCm39)	Q1077L	probably damaging	Het
Ivd	A	T	2: 118,707,373 (GRCm39)	M296L	possibly damaging	Het
Katnal1	T	C	5: 148,828,492 (GRCm39)	D318G	probably null	Het
L3mbtl3	C	T	10: 26,215,129 (GRCm39)	V194I	unknown	Het
Malt1	C	A	18: 65,581,282 (GRCm39)	Q237K	probably benign	Het
Marchf11	C	T	15: 26,311,187 (GRCm39)	A221V	possibly damaging	Het
Nfe2l3	A	G	6: 51,434,524 (GRCm39)	I361M	possibly damaging	Het
Nrg1	G	A	8: 32,308,682 (GRCm39)	R493C	probably damaging	Het
Oga	G	A	19: 45,755,886 (GRCm39)	R586*	probably null	Het
Or10g9b	T	A	9: 39,917,720 (GRCm39)	H175L	probably damaging	Het
Or2f1	T	C	6: 42,721,739 (GRCm39)	I256T	probably damaging	Het
Or4c107	A	C	2: 88,789,392 (GRCm39)	Y194S	probably benign	Het
Or51g2	G	A	7: 102,623,017 (GRCm39)	P61S	probably damaging	Het
Or5ar1	A	T	2: 85,671,307 (GRCm39)	V276E	probably damaging	Het
Or7g16	A	T	9: 18,727,229 (GRCm39)	Y120*	probably null	Het
Orai3	C	T	7: 127,372,799 (GRCm39)	A100V	possibly damaging	Het
Oxsm	T	A	14: 16,241,066 (GRCm38)	M328L	probably benign	Het
Pkd1l1	T	A	11: 8,866,265 (GRCm39)	D980V		Het
Ppp1r16b	T	C	2: 158,603,388 (GRCm39)	Y438H	probably damaging	Het
Ppp4c	A	T	7: 126,386,504 (GRCm39)	H164Q	probably damaging	Het
Prl8a2	C	A	13: 27,536,753 (GRCm39)	T125K	possibly damaging	Het
Rasa2	T	C	9: 96,448,175 (GRCm39)	N494S	possibly damaging	Het
Rpl18a	T	C	8: 71,348,150 (GRCm39)	D147G	probably benign	Het
Scg3	T	C	9: 75,576,559 (GRCm39)	D272G	possibly damaging	Het
Serpinb6c	T	A	13: 34,077,818 (GRCm39)	D184V	probably benign	Het
Simc1	T	G	13: 54,672,162 (GRCm39)	L170R	possibly damaging	Het
Slx4	T	C	16: 3,797,995 (GRCm39)	E1463G	possibly damaging	Het
Stk31	T	A	6: 49,416,166 (GRCm39)		probably null	Het
Tas1r3	A	G	4: 155,946,480 (GRCm39)	I375T	probably damaging	Het
Tbc1d24	T	C	17: 24,401,494 (GRCm39)	D405G	probably damaging	Het
Tcerg1l	G	A	7: 137,861,557 (GRCm39)	P391S	probably damaging	Het
Tiam1	T	C	16: 89,695,083 (GRCm39)	S125G	probably benign	Het
Trim16	C	A	11: 62,724,949 (GRCm39)	H246N	probably damaging	Het
Tti1	T	A	2: 157,837,392 (GRCm39)	N896I	probably damaging	Het
Ubash3a	A	G	17: 31,451,286 (GRCm39)	N395S	probably damaging	Het
Uggt1	T	C	1: 36,203,589 (GRCm39)	I1014V	probably benign	Het
Vmn1r30	T	A	6: 58,412,214 (GRCm39)	Q206L	possibly damaging	Het
Washc5	T	A	15: 59,209,053 (GRCm39)	N1057I	probably benign	Het
Xpo4	GGTATTAGCGGAGT	GGT	14: 57,840,078 (GRCm39)		probably null	Het
Zcchc14	A	T	8: 122,331,756 (GRCm39)	S536T	unknown	Het

Other mutations in Pan2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00164:Pan2	APN	10	128,148,795 (GRCm39)	nonsense	probably null
IGL02183:Pan2	APN	10	128,144,944 (GRCm39)	missense	possibly damaging	0.74
IGL02219:Pan2	APN	10	128,156,221 (GRCm39)	missense	probably benign	0.04
IGL02514:Pan2	APN	10	128,146,610 (GRCm39)	missense	possibly damaging	0.94
IGL02552:Pan2	APN	10	128,154,896 (GRCm39)	missense	probably damaging	1.00
IGL02623:Pan2	APN	10	128,148,768 (GRCm39)	missense	probably benign
IGL02860:Pan2	APN	10	128,146,604 (GRCm39)	nonsense	probably null
IGL03104:Pan2	APN	10	128,151,532 (GRCm39)	splice site	probably benign
IGL03372:Pan2	APN	10	128,150,996 (GRCm39)	missense	probably benign	0.09
R0541:Pan2	UTSW	10	128,144,091 (GRCm39)	missense	possibly damaging	0.87
R0585:Pan2	UTSW	10	128,146,384 (GRCm39)	critical splice donor site	probably null
R1079:Pan2	UTSW	10	128,154,107 (GRCm39)	missense	probably damaging	0.99
R1650:Pan2	UTSW	10	128,153,768 (GRCm39)	missense	probably damaging	1.00
R1847:Pan2	UTSW	10	128,140,247 (GRCm39)	missense	possibly damaging	0.71
R1867:Pan2	UTSW	10	128,149,050 (GRCm39)	missense	probably damaging	1.00
R1903:Pan2	UTSW	10	128,144,237 (GRCm39)	missense	probably damaging	0.98
R1975:Pan2	UTSW	10	128,156,282 (GRCm39)	missense	probably damaging	0.99
R1976:Pan2	UTSW	10	128,156,282 (GRCm39)	missense	probably damaging	0.99
R1977:Pan2	UTSW	10	128,156,282 (GRCm39)	missense	probably damaging	0.99
R2136:Pan2	UTSW	10	128,149,506 (GRCm39)	missense	possibly damaging	0.95
R2162:Pan2	UTSW	10	128,140,091 (GRCm39)	missense	possibly damaging	0.90
R2512:Pan2	UTSW	10	128,140,326 (GRCm39)	missense	probably damaging	1.00
R2566:Pan2	UTSW	10	128,149,766 (GRCm39)	missense	probably damaging	1.00
R2900:Pan2	UTSW	10	128,144,211 (GRCm39)	missense	probably benign
R3957:Pan2	UTSW	10	128,151,046 (GRCm39)	missense	probably damaging	0.99
R4571:Pan2	UTSW	10	128,144,512 (GRCm39)	missense	probably benign	0.05
R5112:Pan2	UTSW	10	128,151,464 (GRCm39)	nonsense	probably null
R5120:Pan2	UTSW	10	128,150,864 (GRCm39)	critical splice donor site	probably null
R5183:Pan2	UTSW	10	128,153,838 (GRCm39)	missense	probably damaging	1.00
R5325:Pan2	UTSW	10	128,153,503 (GRCm39)	missense	possibly damaging	0.59
R5539:Pan2	UTSW	10	128,144,002 (GRCm39)	missense	probably benign	0.16
R5642:Pan2	UTSW	10	128,143,969 (GRCm39)	missense	probably benign	0.00
R5740:Pan2	UTSW	10	128,144,033 (GRCm39)	missense	probably damaging	1.00
R5822:Pan2	UTSW	10	128,156,249 (GRCm39)	missense	probably damaging	1.00
R6766:Pan2	UTSW	10	128,150,381 (GRCm39)	missense	possibly damaging	0.79
R6902:Pan2	UTSW	10	128,151,506 (GRCm39)	missense	probably benign	0.33
R6946:Pan2	UTSW	10	128,151,506 (GRCm39)	missense	probably benign	0.33
R7206:Pan2	UTSW	10	128,150,414 (GRCm39)	nonsense	probably null
R7715:Pan2	UTSW	10	128,153,592 (GRCm39)	missense	probably benign	0.00
R7794:Pan2	UTSW	10	128,152,396 (GRCm39)	splice site	probably null
R8286:Pan2	UTSW	10	128,154,189 (GRCm39)	missense	probably damaging	1.00
R9038:Pan2	UTSW	10	128,153,810 (GRCm39)	nonsense	probably null
R9057:Pan2	UTSW	10	128,156,141 (GRCm39)	missense	probably damaging	1.00
R9072:Pan2	UTSW	10	128,151,050 (GRCm39)	missense	probably damaging	0.98
R9073:Pan2	UTSW	10	128,151,050 (GRCm39)	missense	probably damaging	0.98
R9077:Pan2	UTSW	10	128,148,856 (GRCm39)	missense	probably damaging	1.00
R9583:Pan2	UTSW	10	128,140,135 (GRCm39)	missense	probably benign
R9787:Pan2	UTSW	10	128,144,223 (GRCm39)	missense	probably benign	0.05
RF005:Pan2	UTSW	10	128,151,404 (GRCm39)	missense	probably benign	0.00
RF024:Pan2	UTSW	10	128,151,404 (GRCm39)	missense	probably benign	0.00
Z1177:Pan2	UTSW	10	128,150,368 (GRCm39)	missense	probably damaging	0.97
Z1177:Pan2	UTSW	10	128,140,279 (GRCm39)	missense	possibly damaging	0.94

Predicted Primers

PCR Primer
(F):5'- TGGCCTTTCAGTTCAGCTG -3'
(R):5'- TCTCATGATGGTGACTCCGG -3'

Sequencing Primer
(F):5'- CCTTTCAGTTCAGCTGGGAAAG -3'
(R):5'- GGGTGTCTCGACTGCATAC -3'

Posted On

2019-10-17